Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Reverse (-)

1423238 .. 1424772

Gene Structure 1535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTACAGCTTCAAGGTTTCTTCTACGGAAATTGCCGAGGTTTCTCAAGCTGTCTCCAACTCTTCTCCGTAGCAATGGCGTAAGAGTTTCAAGCAATCTGATTCAAGATTCCATAGAACCGTTGGATTCCTTCTGGAGAATAGGATCTCGAATCCGCCATGATTCTTTGACTACCAGAAGCTTCTCTTCTCAAGGTCCTGCTTCTGTCGATTACAGTTCGGTTTTGCAGGAGGAAGAGTTTCACAAATTAGCCAACTTCACAATTAATCACCTTCTTGAGAAAATTGAGGATTATGGTGATAATGTTCAGATTGATGGTTTCGACATAGATTATGGGAATGAAGTTCTTACCCTTAAGCTTGGATCTTTAGGCACTTATGTACTGAATAAGCAAACTCCAAATCGACAAATCTGGATGTCTTCACCTGTGAGTGGCCCTTCTAGATTTGACTGGGACCGTGATGCTAATGCGTGGATATATCGGCGAACTGAAGCAAAGTTGCATAAACTCCTGGAAGAGGAGTTAGAGAATCTATGTGGTGAACCAATCCAACTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

187

Amino Acids

21.43

Weight (kDa)

5.83

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frataxin_Cyay	PF01491	76 - 183	3.2e-37	Frataxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	2 cut(s)	154, 373
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	434, 520
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	15, 93, 107
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	4 cut(s)	11, 52, 183, 361
AluI	AGCT	4 cut(s)	11, 52, 183, 361
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	154, 373
AoxI	GGCC	1 cut(s)	436
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	197, 437, 457
AsuHPI	GGTGA	4 cut(s)	263, 311, 417, 554
AvaII	GGWCC	2 cut(s)	197, 457
BbsI	GAAGAC	1 cut(s)	414
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	356
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	2 cut(s)	197, 457
BmgT120I	GGNCC	3 cut(s)	197, 437, 457
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	1 cut(s)	515
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	3 cut(s)	32, 177, 299
BsaJI	CCNNGG	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 520
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	434, 520
BseMI	GCAATG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	434, 520
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	146, 365
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	458
BspPI	GGATC	2 cut(s)	154, 373
BspTI	CTTAAG	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	146, 365
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	3 cut(s)	123, 218, 461
Bst6I	CTCTTC	4 cut(s)	69, 193, 231, 513
BstAFI	CTTAAG	1 cut(s)	356
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	2 cut(s)	149, 368
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	146, 365
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	146, 365
BstYI	RGATCY	2 cut(s)	146, 365
BsuRI	GGCC	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	423
Cfr13I	GGNCC	3 cut(s)	197, 437, 457
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	7 cut(s)	5, 11, 52, 183, 254, 361, 438
CviKI_1	RGCY	7 cut(s)	5, 11, 52, 183, 254, 361, 438
CviQI	GTAC	1 cut(s)	383
DpnI	GATC	2 cut(s)	148, 367
DpnII	GATC	2 cut(s)	146, 365
Eam1104I	CTCTTC	4 cut(s)	69, 193, 231, 513
EarI	CTCTTC	4 cut(s)	69, 193, 231, 513
EciI	GGCGGA	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	197, 457
Eco57I	CTGAAG	1 cut(s)	513
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	513
FaeI	CATG	1 cut(s)	164
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	1 cut(s)	160
FokI	GGATG	1 cut(s)	430
FspBI	CTAG	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	164
HindIII	AAGCTT	2 cut(s)	181, 359
HinfI	GANTC	6 cut(s)	103, 110, 128, 153, 164, 532
HphI	GGTGA	4 cut(s)	263, 311, 417, 554
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	2 cut(s)	102, 312
Hpy188III	TCNNGA	6 cut(s)	107, 136, 150, 278, 415, 444
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	3 cut(s)	142, 284, 450
HpyCH4III	ACNGT	3 cut(s)	123, 218, 461
HpyCH4V	TGCA	2 cut(s)	229, 505
Hsp92II	CATG	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	146, 365
LpnPI	CCDG	9 cut(s)	121, 190, 213, 215, 400, 439, 441, 500, 527
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	444
MalI	GATC	2 cut(s)	148, 367
MboI	GATC	2 cut(s)	146, 365
MboII	GAAGA	6 cut(s)	14, 56, 180, 248, 414, 530
MflI	RGATCY	2 cut(s)	146, 365
MluCI	AATT	4 cut(s)	32, 248, 264, 285
MmeI	TCCRAC	2 cut(s)	83, 105
MnlI	CCTC	4 cut(s)	33, 226, 283, 514
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	2 cut(s)	267, 357
MspCI	CTTAAG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
NdeII	GATC	2 cut(s)	146, 365
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	458
NmeAIII	GCCGAG	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	6 cut(s)	103, 110, 128, 153, 164, 532
PfoI	TCCNGGA	1 cut(s)	513
PpuMI	RGGWCCY	1 cut(s)	197
PshBI	ATTAAT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	3 cut(s)	197, 437, 457
PspPPI	RGGWCCY	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	146, 365
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	267, 357
Sau3AI	GATC	2 cut(s)	146, 365
Sau96I	GGNCC	3 cut(s)	197, 437, 457
ScrFI	CCNGG	1 cut(s)	515
SetI	ASST	9 cut(s)	13, 20, 44, 54, 185, 199, 276, 363, 430
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	197, 457
SmlI	CTYRAG	4 cut(s)	47, 192, 278, 356
SmoI	CTYRAG	4 cut(s)	47, 192, 278, 356
Sse9I	AATT	4 cut(s)	32, 248, 264, 285
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	123, 218, 461
TaqI	TCGA	4 cut(s)	151, 210, 324, 406
TasI	AATT	4 cut(s)	32, 248, 264, 285
TatI	WGTACW	1 cut(s)	382
TfiI	GAWTC	6 cut(s)	103, 110, 128, 153, 164, 532
Tru1I	TTAA	2 cut(s)	267, 357
Tru9I	TTAA	2 cut(s)	267, 357
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	2 cut(s)	43, 59
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	197, 457
VspI	ATTAAT	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	518
XbaI	TCTAGA	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.