Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Forward (+)

7205853 .. 7215171

Gene Structure 9319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1087700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTTCAAAGCTGCTTCCGCTGCGACGCCTCTCGAAGAGGCTTCTCAAACCTCCATCTTCTCCTTCTTCTTCTTCTTCCACCGCCTCCAGGGCGTGCTTGCATATTCTAGAAGCTTCGAAATCTCCACATCTCTCCCAGAACAGCCACGACGGACCTCGTCATTGGATAGCTTCCAGAAGCTTCTGTTCTAGCCCTTTGAATCTCGACGACGATACTCAAATCCCCGCCGCCATCGATTACCATTCTGTATTGCCGGAGGATGAATTTCACCGGCTAGCAGATTCTACAATACAAGACCTTCAGGAGAAATTTGAGGAATATGGAGATTGTGTTCAAGTTGATGACTTTGACATAGACTATGGGAATGAGGTGCTGACCTTAAAACTCGGGGATCATGGCACCTATGTTTTGAATAAACAAACACCAAACAGACAAATTTGGTTGTCTTCCCCAGTGAGTGGTCCTCAGAGATTTGACTGGGATCGGAGTTCTCAAGCGTGGGTTTATAGGAGGACCAAAGCTCATTTATTGAAAATTCTAGAGAGTGAGTTGGAGGAACTGTGTGGTGAACCCATCAGCCTCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

197

Amino Acids

22.16

Weight (kDa)

5.58

Isoelectric Point (pI)

66.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frataxin_Cyay	PF01491	86 - 192	5.3e-38	Frataxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	461
AciI	CCGC	4 cut(s)	20, 84, 228, 231
AclWI	GGATC	2 cut(s)	402, 492
AcsI	RAATTY	4 cut(s)	266, 311, 438, 537
AcuI	CTGAAG	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	28
AfiI	CCNNNNNNNGG	2 cut(s)	90, 461
AgsI	TTSAA	5 cut(s)	9, 202, 338, 415, 535
AjnI	CCWGG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	5 cut(s)	13, 116, 173, 183, 524
AluI	AGCT	5 cut(s)	13, 116, 173, 183, 524
AlwI	GGATC	2 cut(s)	402, 492
Ama87I	CYCGRG	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	13, 22
ApoI	RAATTY	4 cut(s)	266, 311, 438, 537
AspS9I	GGNCC	3 cut(s)	155, 464, 516
AsuHPI	GGTGA	2 cut(s)	263, 581
AsuII	TTCGAA	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	3 cut(s)	155, 464, 516
BanI	GGYRCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	3 cut(s)	64, 242, 584
BciT130I	CCWGG	1 cut(s)	91
BfaI	CTAG	4 cut(s)	110, 192, 278, 542
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	14, 23, 231
BlsI	GCNGC	3 cut(s)	15, 24, 232
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	3 cut(s)	155, 464, 516
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	3 cut(s)	155, 464, 516
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	91
BmrI	ACTGGG	2 cut(s)	449, 490
BmtI	GCTAGC	1 cut(s)	281
BmuI	ACTGGG	2 cut(s)	449, 490
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpmI	CTGGAG	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	480
Bsa29I	ATCGAT	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	90
BsaXI	ACNNNNNCTCC	4 cut(s)	318, 348, 548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 461
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	455, 485
BseBI	CCWGG	1 cut(s)	91
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	90, 461
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	2 cut(s)	455, 485
BseXI	GCAGC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	257, 274
BslI	CCNNNNNNNGG	2 cut(s)	90, 461
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	394, 484
BspACI	CCGC	4 cut(s)	20, 84, 228, 231
BspCNI	CTCAG	1 cut(s)	481
BspDI	ATCGAT	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	403
BspOI	GCTAGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	402, 492
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	455, 485
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	394, 484
BssNI	GRCGYC	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	564
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	97, 101, 279
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	397, 487
BstMBI	GATC	2 cut(s)	394, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 22, 92
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	441
Bsu15I	ATCGAT	1 cut(s)	237
BsuTUI	ATCGAT	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	3 cut(s)	97, 101, 279
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	3 cut(s)	155, 464, 516
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	1 cut(s)	36
CviAII	CATG	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	396, 486
DpnII	GATC	2 cut(s)	394, 484
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco47I	GGWCC	3 cut(s)	155, 464, 516
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	401
FaiI	YATR	7 cut(s)	105, 324, 356, 363, 399, 408, 510
FatI	CATG	1 cut(s)	397
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	14, 23, 231
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	3 cut(s)	14, 23, 231
FspBI	CTAG	4 cut(s)	110, 192, 278, 542
GluI	GCNGC	3 cut(s)	14, 23, 231
GsuI	CTGGAG	1 cut(s)	73
HapII	CCGG	2 cut(s)	257, 274
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	401
HindIII	AAGCTT	2 cut(s)	114, 181
HinfI	GANTC	2 cut(s)	202, 284
HpaII	CCGG	2 cut(s)	257, 274
HphI	GGTGA	2 cut(s)	263, 581
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	2 cut(s)	471, 489
Hpy188III	TCNNGA	6 cut(s)	34, 110, 177, 206, 305, 542
Hpy8I	GTNNAC	1 cut(s)	572
Hpy99I	CGWCG	4 cut(s)	30, 155, 212, 215
HpyAV	CCTTC	2 cut(s)	75, 311
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4V	TGCA	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 22, 92
HpyF3I	CTNAG	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	394, 484
LpnPI	CCDG	9 cut(s)	76, 103, 152, 190, 270, 287, 290, 466, 468
Lsp1109I	GCAGC	1 cut(s)	9
MaeI	CTAG	4 cut(s)	110, 192, 278, 542
MalI	GATC	2 cut(s)	396, 486
MboI	GATC	2 cut(s)	394, 484
MboII	GAAGA	7 cut(s)	49, 51, 60, 63, 66, 69, 441
MluCI	AATT	4 cut(s)	266, 311, 438, 537
MmeI	TCCRAC	1 cut(s)	534
MseI	TTAA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	2 cut(s)	257, 274
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	19, 22, 92
NdeII	GATC	2 cut(s)	394, 484
NheI	GCTAGC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	202, 284
PflFI	GACNNNGTC	1 cut(s)	159
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	15, 24, 232
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	3 cut(s)	155, 464, 516
PsyI	GACNNNGTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	3 cut(s)	14, 23, 231
Sau3AI	GATC	2 cut(s)	394, 484
Sau96I	GGNCC	3 cut(s)	155, 464, 516
ScrFI	CCNGG	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	119
SinI	GGWCC	3 cut(s)	155, 464, 516
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	4 cut(s)	266, 311, 438, 537
SsiI	CCGC	4 cut(s)	20, 84, 228, 231
SspMI	CTAG	4 cut(s)	110, 192, 278, 542
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	35, 119, 207, 237
TasI	AATT	4 cut(s)	266, 311, 438, 537
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	202, 284
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	2 cut(s)	13, 22
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	462
Tth111I	GACNNNGTC	1 cut(s)	159
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	3 cut(s)	155, 464, 516
XapI	RAATTY	4 cut(s)	266, 311, 438, 537
XbaI	TCTAGA	2 cut(s)	109, 541
XspI	CTAG	4 cut(s)	110, 192, 278, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.