Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Forward (+)

6331707 .. 6334131

Gene Structure 2425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTTCAAAGCTGCTTCCGCTGCGACGCCTCTCGAAGAGGCTTCTCAAACCTCCATCTTCTCCTTCTTCTTCTTCCACCGCCTCCAGGTCGTGCTTGCATATTCTAGAAGCTTCAAAATCTCCACATCTCTCCCAGAACAGCCACGACGGACCTTGTCATTGGATAGCTTCCAGAAGCTTCTGTTCTAGCCCTTTGAATCTCGACGACGATACTCAAATCCCCGCCGCCATCGATTACCATTCTGTACTGCCGGAGGATGAATTTCACAGGCTAGCTGATTCTACAATACAAGACCTTCAGGAGAAATTTGAGGAATATGGAGATTCTGTTCAAGTTGATGACTTTGACATAGACTATGGGAATGAGGTGCTGACCTTAAAACTCGGGGATCATGGCACCTATGTTTTGAATAAACAAACACCAAACAGACAAATTTGGTTGTCTTCCCCAGTGAGTGGTCCTCAGAGATTTGACTGGGATCGGAGTTCTCAAGCATGGGTTTATAGGAGGACCAAAGCTCATTTATTGAAAATTCTAGAGAGTGAGTTGGAGGAACTGTGTGGTGAACCCATCAGCCTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

196

Amino Acids

22.03

Weight (kDa)

5.43

Isoelectric Point (pI)

69.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frataxin_Cyay	PF01491	85 - 191	1.3e-38	Frataxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	4 cut(s)	20, 81, 225, 228
AclWI	GGATC	2 cut(s)	399, 489
AcsI	RAATTY	4 cut(s)	263, 308, 435, 534
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	87, 458
AgsI	TTSAA	6 cut(s)	9, 117, 199, 335, 412, 532
AjnI	CCWGG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	6 cut(s)	13, 113, 170, 180, 278, 521
AluI	AGCT	6 cut(s)	13, 113, 170, 180, 278, 521
AlwI	GGATC	2 cut(s)	399, 489
Ama87I	CYCGRG	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	13, 22
ApoI	RAATTY	4 cut(s)	263, 308, 435, 534
AspS9I	GGNCC	3 cut(s)	152, 461, 513
AsuHPI	GGTGA	1 cut(s)	578
AsuNHI	GCTAGC	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	3 cut(s)	152, 461, 513
BanI	GGYRCC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	3 cut(s)	64, 239, 581
BciT130I	CCWGG	1 cut(s)	88
BfaI	CTAG	4 cut(s)	107, 189, 275, 539
BisI	GCNGC	3 cut(s)	14, 23, 228
BlsI	GCNGC	3 cut(s)	15, 24, 229
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	3 cut(s)	152, 461, 513
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	3 cut(s)	152, 461, 513
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	88
BmrI	ACTGGG	2 cut(s)	446, 487
BmtI	GCTAGC	1 cut(s)	278
BmuI	ACTGGG	2 cut(s)	446, 487
BpiI	GAAGAC	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	477
Bsa29I	ATCGAT	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	28
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 545, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 458
Bse1I	ACTGG	2 cut(s)	452, 482
BseBI	CCWGG	1 cut(s)	88
BseCI	ATCGAT	1 cut(s)	234
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	87, 458
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	452, 482
BseXI	GCAGC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	87, 458
BsoBI	CYCGRG	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	391, 481
BspACI	CCGC	4 cut(s)	20, 81, 225, 228
BspCNI	CTCAG	1 cut(s)	478
BspDI	ATCGAT	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	399, 489
BspT107I	GGYRCC	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	452, 482
BssMI	GATC	2 cut(s)	391, 481
BssNI	GRCGYC	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	98, 276
BstDEI	CTNAG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	394, 484
BstMBI	GATC	2 cut(s)	391, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 22
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	438
Bsu15I	ATCGAT	1 cut(s)	234
BsuTUI	ATCGAT	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	98, 276
Cfr13I	GGNCC	3 cut(s)	152, 461, 513
ClaI	ATCGAT	1 cut(s)	234
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	2 cut(s)	395, 498
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	393, 483
DpnII	GATC	2 cut(s)	391, 481
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco47I	GGWCC	3 cut(s)	152, 461, 513
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	86
FaeI	CATG	2 cut(s)	398, 501
FaiI	YATR	8 cut(s)	102, 321, 353, 360, 396, 405, 499, 507
FatI	CATG	2 cut(s)	394, 497
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	14, 23, 228
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	3 cut(s)	14, 23, 228
FspBI	CTAG	4 cut(s)	107, 189, 275, 539
GluI	GCNGC	3 cut(s)	14, 23, 228
GsuI	CTGGAG	1 cut(s)	70
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	398, 501
HindIII	AAGCTT	2 cut(s)	111, 178
HinfI	GANTC	3 cut(s)	199, 281, 326
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	2 cut(s)	468, 486
Hpy188III	TCNNGA	6 cut(s)	34, 107, 174, 203, 302, 539
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	4 cut(s)	30, 152, 209, 212
HpyAV	CCTTC	2 cut(s)	75, 308
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 22
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	1 cut(s)	584
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	398, 501
Kzo9I	GATC	2 cut(s)	391, 481
LpnPI	CCDG	9 cut(s)	73, 100, 149, 187, 256, 267, 287, 463, 465
Lsp1109I	GCAGC	1 cut(s)	9
MaeI	CTAG	4 cut(s)	107, 189, 275, 539
MaeII	ACGT	1 cut(s)	584
MalI	GATC	2 cut(s)	393, 483
MboI	GATC	2 cut(s)	391, 481
MboII	GAAGA	6 cut(s)	49, 51, 60, 63, 66, 438
MluCI	AATT	4 cut(s)	263, 308, 435, 534
MmeI	TCCRAC	1 cut(s)	531
MseI	TTAA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	19, 22
NdeII	GATC	2 cut(s)	391, 481
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	398, 501
NlaIV	GGNNCC	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	199, 281, 326
PflFI	GACNNNGTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	15, 24, 229
Ppu21I	YACGTR	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	3 cut(s)	152, 461, 513
PsyI	GACNNNGTC	1 cut(s)	156
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	3 cut(s)	14, 23, 228
Sau3AI	GATC	2 cut(s)	391, 481
Sau96I	GGNCC	3 cut(s)	152, 461, 513
ScrFI	CCNGG	1 cut(s)	88
SinI	GGWCC	3 cut(s)	152, 461, 513
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	4 cut(s)	263, 308, 435, 534
SsiI	CCGC	4 cut(s)	20, 81, 225, 228
SspMI	CTAG	4 cut(s)	107, 189, 275, 539
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	561
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	3 cut(s)	35, 204, 234
TasI	AATT	4 cut(s)	263, 308, 435, 534
TatI	WGTACW	1 cut(s)	247
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	3 cut(s)	199, 281, 326
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	2 cut(s)	13, 22
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	459
Tth111I	GACNNNGTC	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	458
VpaK11BI	GGWCC	3 cut(s)	152, 461, 513
XapI	RAATTY	4 cut(s)	263, 308, 435, 534
XbaI	TCTAGA	2 cut(s)	106, 538
XspI	CTAG	4 cut(s)	107, 189, 275, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.