Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006420.1

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Reverse (-)

154697 .. 158904

Gene Structure 4208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006420.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggcttcaaggttgcttccgctgagaaggctctcgaggcttcttcttctcaagcctccatcttcgaatttccgaacaagctccgctcttcttctagacgcttcgaggtctcttcacctctctgatactagccatggacctctccattggattgcttccagaagcttctgttcttctccccctttgaatctcaacgaaggccccgccgctatcgattacagttctgtactgcaggaggatgaatttcataagctagctgattctacaatacatgacctgcaagagaaattcgaggaatatggagatagtgttcaagttgatggctttgacatagactatgggaatgaggtattgaccttaaagcttggggatttgggcacctatgttttgaacaaacaaacaccaaataggcaaatttggttgtcttccccagtgagtggtccttttagattcgattgggatcgggatgctgaagcttggatttacaggaggacgaaagagagcaccaacctagtcacaaggttcttttctctgtctttcggaaaaggacttcttgccttacgggtaagggctttggttgtgatctcttcgcttcaccaaatcgatactcaacgttgtaggttgagcagagcaatcactgggaagttggagaaagcacgggttttgctaaagcgtgactttagcttcgctgggttgcgagggcgttacccttacttcgctagtcgagatagtctcggaggtagtggtactggcagtcggctcttggggagactggggctggaagtacggtcgccaggttggtttggcggcactgacagtaggctcttgaggggactgggactggagtgtggtcactggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

286

Amino Acids

32.06

Weight (kDa)

9.56

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	377
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	86
AciI	CCGC	5 cut(s)	20, 84, 204, 207, 807
AclI	AACGTT	1 cut(s)	613
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	4 cut(s)	67, 242, 287, 414
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	3 cut(s)	228, 748, 786
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	4 cut(s)	9, 187, 314, 391
AjnI	CCWGG	1 cut(s)	793
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	7 cut(s)	81, 165, 253, 257, 364, 476, 684
AluI	AGCT	7 cut(s)	81, 165, 253, 257, 364, 476, 684
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	3 cut(s)	114, 737, 763
AlwI	GGATC	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	4 cut(s)	67, 242, 287, 414
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
AspS9I	GGNCC	3 cut(s)	137, 200, 440
AsuHPI	GGTGA	2 cut(s)	107, 587
AsuII	TTCGAA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	137, 440
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	506
BccI	CCATC	2 cut(s)	67, 314
BciT130I	CCWGG	1 cut(s)	795
BcoDI	GTCTC	3 cut(s)	114, 737, 763
BfaI	CTAG	5 cut(s)	95, 129, 254, 512, 720
BfmI	CTRYAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	2 cut(s)	207, 808
BlsI	GCNGC	2 cut(s)	208, 809
Bme1390I	CCNGG	1 cut(s)	795
Bme18I	GGWCC	2 cut(s)	137, 440
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	3 cut(s)	137, 200, 440
BmiI	GGNNCC	2 cut(s)	202, 379
BmrFI	CCNGG	1 cut(s)	795
BmrI	ACTGGG	4 cut(s)	425, 648, 782, 845
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	257
BmuI	ACTGGG	4 cut(s)	425, 648, 782, 845
BpiI	GAAGAC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	717, 749
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	35, 847
Bsa29I	ATCGAT	2 cut(s)	213, 603
BsaBI	GATNNNNATC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	7 cut(s)	431, 643, 754, 777, 840, 846, 860
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	795
BseCI	ATCGAT	2 cut(s)	213, 603
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	244, 472
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	7 cut(s)	431, 643, 754, 777, 840, 846, 860
BseSI	GKGCMC	1 cut(s)	380
BseYI	CCCAGC	1 cut(s)	689
Bsh1285I	CGRYCG	1 cut(s)	791
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	377
BshVI	ATCGAT	2 cut(s)	213, 603
BsiEI	CGRYCG	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	506
BsiHKCI	CYCGRG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	846, 852
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	3 cut(s)	114, 737, 763
BsmFI	GGGAC	2 cut(s)	846, 852
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	380, 506
Bsp143I	GATC	2 cut(s)	460, 582
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	5 cut(s)	20, 84, 204, 207, 807
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	15
BspDI	ATCGAT	2 cut(s)	213, 603
BspLI	GGNNCC	2 cut(s)	202, 379
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	285
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	93
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	86
BsrI	ACTGG	7 cut(s)	431, 643, 754, 777, 840, 846, 860
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	460, 582
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	3 cut(s)	221, 789, 818
Bst6I	CTCTTC	3 cut(s)	93, 117, 592
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	244, 472
BstKTI	GATC	2 cut(s)	463, 585
BstMAI	GTCTC	3 cut(s)	114, 737, 763
BstMBI	GATC	2 cut(s)	460, 582
BstMCI	CGRYCG	1 cut(s)	791
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 37
BstNI	CCWGG	1 cut(s)	795
BstSCI	CCNGG	1 cut(s)	793
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	417
Bsu15I	ATCGAT	2 cut(s)	213, 603
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	2 cut(s)	213, 603
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	244, 472
BtsIMutI	CAGTG	4 cut(s)	438, 636, 810, 853
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	137, 200, 440
ClaI	ATCGAT	2 cut(s)	213, 603
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	227, 747, 785
CviAII	CATG	2 cut(s)	134, 272
CviQI	GTAC	3 cut(s)	227, 747, 785
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	462, 584
DpnII	GATC	2 cut(s)	460, 582
Eam1104I	CTCTTC	3 cut(s)	93, 117, 592
EarI	CTCTTC	3 cut(s)	93, 117, 592
Eco130I	CCWWGG	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	137, 440
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	793
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	2 cut(s)	137, 275
FaiI	YATR	7 cut(s)	135, 249, 273, 300, 332, 339, 384
FalI	AAGNNNNNCTT	4 cut(s)	537, 569, 662, 694
FaqI	GGGAC	2 cut(s)	846, 852
FatI	CATG	2 cut(s)	133, 271
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	207, 808
FokI	GGATG	2 cut(s)	251, 479
Fsp4HI	GCNGC	2 cut(s)	207, 808
FspBI	CTAG	5 cut(s)	95, 129, 254, 512, 720
GluI	GCNGC	2 cut(s)	207, 808
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	1 cut(s)	201
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	137, 275
HindIII	AAGCTT	3 cut(s)	163, 362, 474
HinfI	GANTC	3 cut(s)	187, 260, 450
HphI	GGTGA	2 cut(s)	107, 587
Hpy188I	TCNGA	4 cut(s)	74, 124, 542, 737
Hpy188III	TCNNGA	6 cut(s)	34, 95, 159, 464, 725, 826
HpyAV	CCTTC	2 cut(s)	21, 191
HpyCH4III	ACNGT	3 cut(s)	221, 789, 818
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	2 cut(s)	232, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 37
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	2 cut(s)	137, 275
Kzo9I	GATC	2 cut(s)	460, 582
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	86
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	5 cut(s)	95, 129, 254, 512, 720
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	4 cut(s)	514, 674, 704, 851
MalI	GATC	2 cut(s)	462, 584
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	2 cut(s)	460, 582
MboII	GAAGA	9 cut(s)	35, 38, 54, 80, 83, 104, 165, 417, 579
MhlI	GDGCHC	2 cut(s)	380, 506
MluCI	AATT	4 cut(s)	67, 242, 287, 414
MmeI	TCCRAC	1 cut(s)	627
MseI	TTAA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	795
MwoI	GCNNNNNNNGC	2 cut(s)	28, 37
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	2 cut(s)	460, 582
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	137, 275
NlaIV	GGNNCC	2 cut(s)	202, 379
NmuCI	GTSAC	3 cut(s)	514, 674, 851
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	187, 260, 450
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	208, 809
Psp1406I	AACGTT	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	793
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	2 cut(s)	202, 379
PspPI	GGNCC	3 cut(s)	137, 200, 440
PstI	CTGCAG	1 cut(s)	234
RsaI	GTAC	3 cut(s)	228, 748, 786
RsaNI	GTAC	3 cut(s)	227, 747, 785
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	207, 808
Sau3AI	GATC	2 cut(s)	460, 582
Sau96I	GGNCC	3 cut(s)	137, 200, 440
ScrFI	CCNGG	1 cut(s)	795
SduI	GDGCHC	2 cut(s)	380, 506
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	2 cut(s)	137, 440
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	3 cut(s)	34, 50, 826
SmoI	CTYRAG	3 cut(s)	34, 50, 826
Sse9I	AATT	4 cut(s)	67, 242, 287, 414
SsiI	CCGC	5 cut(s)	20, 84, 204, 207, 807
SspMI	CTAG	5 cut(s)	95, 129, 254, 512, 720
StyD4I	CCNGG	1 cut(s)	793
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	221, 789, 818
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	8 cut(s)	35, 65, 104, 213, 291, 453, 603, 724
TasI	AATT	4 cut(s)	67, 242, 287, 414
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	2 cut(s)	209, 810
TfiI	GAWTC	3 cut(s)	187, 260, 450
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	4 cut(s)	438, 643, 817, 860
TseFI	GTSAC	3 cut(s)	514, 674, 851
Tsp45I	GTSAC	3 cut(s)	514, 674, 851
TspDTI	ATGAA	2 cut(s)	236, 255
TspRI	CASTG	4 cut(s)	438, 643, 817, 860
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	137, 440
XapI	RAATTY	4 cut(s)	67, 242, 287, 414
XbaI	TCTAGA	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	5 cut(s)	95, 129, 254, 512, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.