Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Reverse (-)

34129524 .. 34132359

Gene Structure 2836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTTCAACAAACATAGAGAGAAAGCTCTCCAACTGACGGCCATGGCTTCAAGGTTGCTCCAACTGAGAAGGCTCTCGAGGCTTCTTCTCAAGCCCCCATCTTCGAATTTCAGACCATCCTCCTATCTTCTTCTAGAAGCTTCGAGACCTCTCCACCTCCCGGACACTAGCCACGGACCTCTCTATTCGATTGCTTCCAGAAGCTTCTGTTCTTCTCCCCCTTTCAATCTCAACGAAGGCCCCGCCGCCATCGATTACAGTTCAGTACTGCAGGAGGATGAATTTCACAAGCTAGCTGATTCTACAATACATGATCTCCAAGAAAAATTTGAGGAATATGGAGATAGTGTTCAAGTTGATGGCTTTGACATAGACTATGGGAATGAGGTATTGACATTAAAGCTTGGGGATTTGGGCACTTATGTTTTGAACAAACAAACACCAAATAGGCAGCTTTGGTTGTCTTCCCCTGTGAGTGGTCCTTTCAGATTTGATTGGGATCGGGATGCTGAAGCTTGGATATACAGGAGGACAAAAGTTAAGTTATTAACACTTTTAGAAACTGAGATGGAGCAATTGTGTGGTGAGCCGATCAGCCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

202

Amino Acids

22.95

Weight (kDa)

5.56

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frataxin_Cyay	PF01491	91 - 197	7.7e-38	Frataxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	243, 246
AclWI	GGATC	1 cut(s)	507
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	106, 281, 326
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	3 cut(s)	37, 160, 476
AgsI	TTSAA	5 cut(s)	7, 51, 226, 353, 430
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	8 cut(s)	26, 140, 204, 292, 296, 403, 454, 515
AluI	AGCT	8 cut(s)	26, 140, 204, 292, 296, 403, 454, 515
Alw26I	GTCTC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	2 cut(s)	39, 238
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	106, 281, 326
AspS9I	GGNCC	3 cut(s)	176, 239, 479
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	1 cut(s)	104
AsuNHI	GCTAGC	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	176, 479
BaeGI	GKGCMC	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	5 cut(s)	106, 124, 257, 353, 562
BceAI	ACGGC	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	3 cut(s)	134, 168, 293
BfmI	CTRYAG	1 cut(s)	269
BisI	GCNGC	2 cut(s)	246, 452
BlsI	GCNGC	2 cut(s)	247, 453
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	176, 479
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	3 cut(s)	176, 239, 479
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	496
BmtI	GCTAGC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	42, 172
BsaXI	ACNNNNNCTCC	6 cut(s)	300, 330, 333, 363, 563, 593
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 160, 476
Bse8I	GATNNNNATC	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	42, 172
BseGI	GGATG	3 cut(s)	116, 283, 511
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	37, 160, 476
BseMII	CTCAG	2 cut(s)	56, 555
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	2 cut(s)	41, 240
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	3 cut(s)	37, 160, 476
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	41, 240
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	3 cut(s)	313, 499, 591
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	2 cut(s)	243, 246
BspANI	GGCC	2 cut(s)	41, 240
BspCNI	CTCAG	2 cut(s)	57, 556
BspDI	ATCGAT	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	602
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	273
BspOI	GCTAGC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	42, 172
BssMI	GATC	3 cut(s)	313, 499, 591
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	65, 564
BstDSI	CCRYGG	2 cut(s)	42, 172
BstF5I	GGATG	3 cut(s)	116, 283, 511
BstKTI	GATC	3 cut(s)	316, 502, 594
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	3 cut(s)	313, 499, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	419
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	41, 240
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	2 cut(s)	42, 172
BtsCI	GGATG	3 cut(s)	116, 283, 511
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	602
Cfr13I	GGNCC	3 cut(s)	176, 239, 479
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	3 cut(s)	43, 311, 603
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	65, 564
DpnI	GATC	3 cut(s)	315, 501, 593
DpnII	GATC	3 cut(s)	313, 499, 591
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	176, 479
Eco57I	CTGAAG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	3 cut(s)	46, 314, 606
FaiI	YATR	9 cut(s)	15, 44, 312, 339, 371, 378, 423, 523, 604
FatI	CATG	3 cut(s)	42, 310, 602
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	246, 452
FokI	GGATG	3 cut(s)	103, 290, 518
Fsp4HI	GCNGC	2 cut(s)	246, 452
FspBI	CTAG	3 cut(s)	134, 168, 293
GluI	GCNGC	2 cut(s)	246, 452
HaeIII	GGCC	2 cut(s)	41, 240
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	3 cut(s)	46, 314, 606
HindIII	AAGCTT	4 cut(s)	138, 202, 401, 513
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	596
Hpy188I	TCNGA	2 cut(s)	113, 488
Hpy188III	TCNNGA	6 cut(s)	76, 134, 144, 198, 503, 603
HpyAV	CCTTC	2 cut(s)	63, 230
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	65, 564
Hsp92II	CATG	3 cut(s)	46, 314, 606
Kzo9I	GATC	3 cut(s)	313, 499, 591
LmnI	GCTCC	2 cut(s)	63, 571
LpnPI	CCDG	5 cut(s)	174, 211, 257, 483, 511
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	3 cut(s)	134, 168, 293
MalI	GATC	3 cut(s)	315, 501, 593
MboI	GATC	3 cut(s)	313, 499, 591
MboII	GAAGA	6 cut(s)	77, 93, 119, 122, 204, 456
MfeI	CAATTG	1 cut(s)	575
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	4 cut(s)	106, 281, 326, 575
MmeI	TCCRAC	2 cut(s)	55, 85
MnlI	CCTC	9 cut(s)	72, 130, 159, 167, 189, 268, 325, 379, 522
MseI	TTAA	3 cut(s)	398, 540, 548
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	3 cut(s)	313, 499, 591
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	46, 314, 606
NlaIV	GGNNCC	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	76
PagI	TCATGA	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	247, 453
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	3 cut(s)	176, 239, 479
PstI	CTGCAG	1 cut(s)	273
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	398, 540, 548
SatI	GCNGC	2 cut(s)	246, 452
Sau3AI	GATC	3 cut(s)	313, 499, 591
Sau96I	GGNCC	3 cut(s)	176, 239, 479
ScaI	AGTACT	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	419
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	269
Sfr274I	CTCGAG	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	2 cut(s)	176, 479
SlaI	CTCGAG	1 cut(s)	76
SmlI	CTYRAG	2 cut(s)	76, 89
SmoI	CTYRAG	2 cut(s)	76, 89
Sse9I	AATT	4 cut(s)	106, 281, 326, 575
SsiI	CCGC	2 cut(s)	243, 246
SspMI	CTAG	3 cut(s)	134, 168, 293
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	5 cut(s)	77, 104, 143, 188, 252
TasI	AATT	4 cut(s)	106, 281, 326, 575
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	3 cut(s)	398, 540, 548
Tru9I	TTAA	3 cut(s)	398, 540, 548
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	294, 591
TspGWI	ACGGA	1 cut(s)	189
VpaK11BI	GGWCC	2 cut(s)	176, 479
XapI	RAATTY	3 cut(s)	106, 281, 326
XbaI	TCTAGA	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	76
XspI	CTAG	3 cut(s)	134, 168, 293
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.