Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Forward (+)

7235956 .. 7238561

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1099400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACGATACTAATATTCCCGCCGCCATCGATTACCAGTAATTCTGTACTACAGGAGGATGAATTTCACAGGCTAGCTGATTCTACAATACAAGACCTCCAAGAGAAATTTGAGGAATATGGGGATTCTGTTCAAGTCGACGACTTTGACATAGACTATGGGCCTTACCCCCATTTATGGAGAGGCTGCTCCCAAGACAAACAAACACCAAACAGACAAATTTGGTTGTCTTCCCCGGTGAGTGGTCCTCAGAGATTTGACTGGGATCGGAGTGCTCAAGCGTGGGTTTATAGGAGGACCAAAGCTCGTTTATTGAAAATTCTAGAGAGTGAGTTGGAGGAACTGTGTGGTGAACCCATCAGCCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

124

Amino Acids

14.3

Weight (kDa)

4.56

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frataxin_Cyay	PF01491	67 - 119	5.7e-18	Frataxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	2 cut(s)	20, 23
AclWI	GGATC	1 cut(s)	273
AcsI	RAATTY	4 cut(s)	62, 107, 219, 318
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	177, 242
AgsI	TTSAA	2 cut(s)	134, 316
AluBI	AGCT	2 cut(s)	77, 305
AluI	AGCT	2 cut(s)	77, 305
Alw21I	GWGCWC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	273
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	4 cut(s)	62, 107, 219, 318
AspS9I	GGNCC	3 cut(s)	161, 245, 297
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	250, 362
AsuNHI	GCTAGC	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	245, 297
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	34, 365
BcnI	CCSGG	1 cut(s)	236
BfaI	CTAG	2 cut(s)	74, 323
BfmI	CTRYAG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	23, 187
BlsI	GCNGC	2 cut(s)	24, 188
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	245, 297
BmgT120I	GGNCC	3 cut(s)	161, 245, 297
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	271
BmtI	GCTAGC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	236
Bsa29I	ATCGAT	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 242
Bse1I	ACTGG	2 cut(s)	36, 266
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	177, 242
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	36, 266
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	163
BshVI	ATCGAT	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	177, 242
BsnI	GGCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	2 cut(s)	20, 23
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	29
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	36, 266
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	163
BsuTUI	ATCGAT	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	161, 245, 297
ClaI	ATCGAT	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	47
CviJI	RGCY	6 cut(s)	73, 77, 163, 186, 305, 363
CviKI_1	RGCY	6 cut(s)	73, 77, 163, 186, 305, 363
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	245, 297
FaiI	YATR	6 cut(s)	120, 152, 159, 178, 291, 370
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	23, 187
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	23, 187
FspBI	CTAG	2 cut(s)	74, 323
GluI	GCNGC	2 cut(s)	23, 187
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	80, 125
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	250, 362
Hpy166II	GTNNAC	2 cut(s)	139, 353
Hpy188I	TCNGA	2 cut(s)	252, 270
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	2 cut(s)	139, 353
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	345
HpyF3I	CTNAG	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	5 cut(s)	38, 49, 55, 247, 249
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	2 cut(s)	74, 323
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	5 cut(s)	40, 62, 107, 219, 318
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	49, 106, 107, 176, 258, 288, 331
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	236
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	265
NheI	GCTAGC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	80, 125
PkrI	GCNGC	2 cut(s)	24, 188
PspPI	GGNCC	3 cut(s)	161, 245, 297
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SalI	GTCGAC	1 cut(s)	137
SatI	GCNGC	2 cut(s)	23, 187
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	3 cut(s)	161, 245, 297
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	3 cut(s)	79, 99, 307
SfcI	CTRYAG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	245, 297
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	5 cut(s)	40, 62, 107, 219, 318
SsiI	CCGC	2 cut(s)	20, 23
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	74, 323
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	29, 138
TasI	AATT	5 cut(s)	40, 62, 107, 219, 318
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	80, 125
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	75, 357
VpaK11BI	GGWCC	2 cut(s)	245, 297
XapI	RAATTY	4 cut(s)	62, 107, 219, 318
XbaI	TCTAGA	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	2 cut(s)	74, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.