Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Reverse (-)

72877147 .. 72881286

Gene Structure 4140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G045750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTTCAAGGTTGCTTCCGCTGAGAAGGCTCTCGAGGCTTCTTCTTCTCAAGCCTCCATCTTCGAATTTCCGAACAAGCTCCGCTCTTCTTCTAGACGCTTCGAGGTCTCTTCACCTCTCTGATACTAGCCATGGACCTCTCCATTGGATTGCTTCCAGAAGCTTCTGTTCTTCTCCCCCTTTGAATCTCAACGAAGGCCCCGCCGCTATCGATTACAGTTCTGTACTGCAGGAGGATGAATTTCATAAGCTAGCTGATTCTACAATACATGACCTGCAAGAGAAATTCGAGGAATATGGAGATAGTGTTCAAGTTGATGGCTTTGACATAGACTATGGGAATGAGGTATTGACCTTAAAGCTTGGGGATTTGGGCACCTATGTTTTGAACAAACAAACACCAAATAGGCAAATTTGGTTGTCTTCCCCAGTGAGTGGTCCTTTTAGATTCGATTGGGATCGGGATGCTGAAGCTTGGATTTACAGGAGGACGAAAGTTAAGTTATTGACACTTCTAGAAAGTGAGATGGAGCAATTGTGTGGTGAAGCCATCAGCCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

188

Amino Acids

21.24

Weight (kDa)

5.2

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frataxin_Cyay	PF01491	78 - 184	2e-38	Frataxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	377
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	86
AciI	CCGC	4 cut(s)	20, 84, 204, 207
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	4 cut(s)	67, 242, 287, 414
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	4 cut(s)	9, 187, 314, 391
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	6 cut(s)	81, 165, 253, 257, 364, 476
AluI	AGCT	6 cut(s)	81, 165, 253, 257, 364, 476
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	4 cut(s)	67, 242, 287, 414
AspS9I	GGNCC	3 cut(s)	137, 200, 440
AsuHPI	GGTGA	2 cut(s)	107, 557
AsuII	TTCGAA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	137, 440
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	417
BccI	CCATC	4 cut(s)	67, 314, 523, 560
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	4 cut(s)	95, 129, 254, 518
BfmI	CTRYAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	2 cut(s)	137, 440
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	3 cut(s)	137, 200, 440
BmiI	GGNNCC	2 cut(s)	202, 379
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	257
BmuI	ACTGGG	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	133
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 324, 524, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	431
Bse8I	GATNNNNATC	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	244, 472
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	1 cut(s)	460
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	4 cut(s)	20, 84, 204, 207
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	15
BspDI	ATCGAT	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	202, 379
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	285
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	93
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	2 cut(s)	93, 117
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	244, 472
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 37
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	417
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	244, 472
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	137, 200, 440
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	134, 272
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
Eam1104I	CTCTTC	2 cut(s)	93, 117
EarI	CTCTTC	2 cut(s)	93, 117
Eco130I	CCWWGG	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	137, 440
Eco57I	CTGAAG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	2 cut(s)	137, 275
FaiI	YATR	8 cut(s)	135, 249, 273, 300, 332, 339, 384, 565
FatI	CATG	2 cut(s)	133, 271
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	251, 479
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	4 cut(s)	95, 129, 254, 518
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	201
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	137, 275
HindIII	AAGCTT	3 cut(s)	163, 362, 474
HinfI	GANTC	3 cut(s)	187, 260, 450
HphI	GGTGA	2 cut(s)	107, 557
Hpy188I	TCNGA	2 cut(s)	74, 124
Hpy188III	TCNNGA	5 cut(s)	34, 95, 159, 464, 518
HpyAV	CCTTC	2 cut(s)	21, 191
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	232, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 37
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	137, 275
Kzo9I	GATC	1 cut(s)	460
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	86, 532
LpnPI	CCDG	5 cut(s)	172, 218, 290, 444, 472
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	4 cut(s)	95, 129, 254, 518
MalI	GATC	1 cut(s)	462
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	460
MboII	GAAGA	8 cut(s)	35, 38, 54, 80, 83, 104, 165, 417
MfeI	CAATTG	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	5 cut(s)	67, 242, 287, 414, 536
MnlI	CCTC	9 cut(s)	30, 66, 99, 128, 150, 229, 286, 340, 483
MseI	TTAA	2 cut(s)	359, 501
MspA1I	CMGCKG	1 cut(s)	22
MunI	CAATTG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	28, 37
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	460
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	137, 275
NlaIV	GGNNCC	2 cut(s)	202, 379
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	187, 260, 450
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	202, 379
PspPI	GGNCC	3 cut(s)	137, 200, 440
PstI	CTGCAG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	359, 501
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	3 cut(s)	137, 200, 440
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	2 cut(s)	137, 440
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	34, 50
SmoI	CTYRAG	2 cut(s)	34, 50
Sse9I	AATT	5 cut(s)	67, 242, 287, 414, 536
SsiI	CCGC	4 cut(s)	20, 84, 204, 207
SspMI	CTAG	4 cut(s)	95, 129, 254, 518
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	6 cut(s)	35, 65, 104, 213, 291, 453
TasI	AATT	5 cut(s)	67, 242, 287, 414, 536
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	3 cut(s)	187, 260, 450
Tru1I	TTAA	2 cut(s)	359, 501
Tru9I	TTAA	2 cut(s)	359, 501
TscAI	CASTG	1 cut(s)	438
TspDTI	ATGAA	3 cut(s)	236, 255, 552
TspRI	CASTG	1 cut(s)	438
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	137, 440
XapI	RAATTY	4 cut(s)	67, 242, 287, 414
XbaI	TCTAGA	2 cut(s)	94, 517
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	4 cut(s)	95, 129, 254, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.