Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Reverse (-)

61602048 .. 61609848

Gene Structure 7801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0486300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGAGGCTTTCTTCTTCGTCTTCGTCTTCGGGGTTTAATAATCATCAGCCTCAGGAAGGGGAGAAGAAATGTTTGAATTCTGAGCTATGGCATGCGTGTGCGGGGCCTCTGGTGTCTCTGCCTGCTCTTGGTAGTCGCGTAGTCTACTTTCCGCAAGGTCACAGTGAGCAGGTTGCTGCATCAACCAATAAGGAAGTTGATGCCCATATTCCCAATTACCCAAACCTACCTCCACAACTAATTTGTCAACTTCACAATGTGACTATGCATGCCGATGTGGAGACGGATGAAGTATATGCTCAAATGACCCTGCAACCATTAAGTCCGCAAGAGCAAAAGGATGTATACCTAATGCCTGCAGAGTTGGGCAATCCCAGCAAACAGCCAACCAACTATTTCTGTAAAACTTTGACCGCAAGTGATACTAGCACGCATGGAGGATTTTCTGTTCCCCGCCGTGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTACTCACAGCAGCCCCCAGCGCAGGAACTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGCCAGCCCAAGAGGCATCTTCTCACAACTGGATGGAGCGTGTTCGTTAGTGCTAAACGACTTGTTGCCGGTGATTCTGTCCTTTTTATTTGGAATGAAAAGAATCAGTTGCTCTTGGGCATTCGGAGAGCAAATCGTCCGCAGACTGTTATGCCGTCGTCGGTTTTATCAAGCGATAGCATGCATATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGGTTTACTATATTTTATAATCCAAGAGCAAGTCCTTCTGAATTTGTGATACCCCTGGCCAAGTATGTTAAGGCTGTCTATCATACACGTGTTTCTGTGGGAATGCGATTTAGGATGCTGTTTGAGACAGAAGAATCAAGTGTTCGCCGATACATGGGTACAATAACTGGCATCAGTGATTTAGATTCTGTTCGCTGGTCAAATTCACACTGGCGTTCTGTGAAGGTAGGCTGGGATGAATCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCATTGTGGGAGATTGAACCGCTAACAACTTTTCCCATGTACCCTTCCCCATTCCCTCTCAGACTGAAGCGACCATGGCCATCTGGCATGCCCTCTTTCCATGCGCTCAAAGACGGTGATATGGGCCTGAACACTCCACTGATGTGGCTCCAAGGAGGGGTTGGAGATCCAGGGATGCAATCTTTGAACTTCCAGGGATTTGGGGTTACGCCCTGGATGCAGCCACGGCTTGATGCTTCTATGGCAGGTCTACAGCCTGATGTATACCAAGCAATGGCAGCTGCTGCACTTCAAGAAATGAGGGCAGTGGATGCAAAATGTTCTTCGCAGTCGCTTCTACCCTTCCAGCAATCTTCAAATGTTTCAAATGGGCCTGCTGCTATGCTTCAGAGACATAGTTTACCTCAGTCTCAGTCTCAGAATACTTTTCTCCAGAGCTTTCAAGAAAACCAAGCTCCTGCTTCTCAGCTGTTGCAACAACAGTTGCGTTATCATCCATATAATAATGATCAGAGGCAGCAGCAGCAGCATCATCATCAACAGCAGCTGCACCAGCACCAGCAGCAGCAGCAGCTTCAACAGCAGCATCTTCAACAATCCCAGAATATGCACCAATTTTCTGTTCAGCAGCAGATTCCGAATGTAATGTCTTCTCTATCTAATTTTGCTACTCAATCTCAGTCTGCATCACTACAAGCTATTCCTTCACAAACTCAGCAGCAGAGCTTTCCCGAATCTGTTGGAAATGCTATATCTTCATCCGATGTTCCCCCTATACATAGCATATTAGGTTCACTATCGCAGGATGGAGCATCGCAGTTACTTAACTTGAGTGGATCCAACACTGGAATATCTTCTACTTTGTTACCCAAGGTTGAATCACAGCTATCATCTGGGGCTACTCAATGTGTACTCCCCCAAGTGGATCAGTTGGGAACACCACAGTCAAATATCTCCGAGCTCACTGCCTTGCCTCCATTTCCTGGCAGAGAGTACTCTTTCCAAGGTGCTACTGATCCCCAGAGCAATCTTTTGTTTGGGGTTAACATTGATGCCTCATCTCTAATGCTACAGAATGGGATACCAAATCTGAGAAATATTGGCGGTGGAACTGATTCATTGTCTATGCCGTTCGGTGCTCCAAATTATACCAGTGCAACAGGCAATGATTATCCACTGAATTCAGATATGACTACTTCAAGTTGTGTAGATGAATCAGGCTTCTTGCAGTCTTCAGAAAATGTGGACCAAGTAAATCCACCAACTCGAACCTTTGTGAAGGTTCACAAGTCGGGGTCCTTTGGGAGGTCACTGGATATTTCAAAATTCAGCAGCTACGATGAGCTGCGCGGTGAGCTCGGAAGCATGTTTGGCCTTGAAGGCCAATTAGAGGATCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGACGACCCTTGGCAGGAGTTTGTGAACAATGTTTGGTATATCAAGATACTTTCTCCGCTTGAAGTGCAACAAATGGGAAAGGAAGGCCTCAATCGTGTGGCTTCTGTCCCAAGCCAAAAGCTTTCCAATGGCAGCAATACCTGTGATGACTACGTGACCCGACAGGACTTGAGAAACTCAAGCAATGGGATTGCATCGCTGGGCTCCCTTGACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

915

Amino Acids

101.17

Weight (kDa)

6.0

Isoelectric Point (pI)

66.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	133 - 235	2e-22	B3 DNA binding domain
ARF_AD	PF06507	282 - 365	1.8e-33	Auxin response factor ancillary domain
AUX_IAA	PF02309	773 - 862	5e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
Acc36I	ACCTGC	2 cut(s)	160, 1307
AccB7I	CCANNNNNTGG	2 cut(s)	1345, 2054
AccI	GTMKAC	4 cut(s)	144, 345, 1321, 1335
AccII	CGCG	2 cut(s)	138, 2421
AclWI	GGATC	8 cut(s)	537, 1232, 1902, 1915, 2004, 2081, 2459, 2472
AcoI	YGGCCR	2 cut(s)	858, 1148
AcsI	RAATTY	6 cut(s)	76, 551, 842, 1003, 2251, 2396
AcuI	CTGAAG	3 cut(s)	1157, 1442, 2289
AcvI	CACGTG	1 cut(s)	890
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	4 cut(s)	961, 1112, 1983, 2066
AflIII	ACRYGT	2 cut(s)	887, 889
AjnI	CCWGG	5 cut(s)	855, 1240, 1263, 1283, 2053
AjuI	GAANNNNNNNTTGG	2 cut(s)	1677, 1709
AleI	CACNNNNGTG	1 cut(s)	1213
AloI	GAACNNNNNNTCC	2 cut(s)	432, 464
Alw21I	GWGCWC	3 cut(s)	2034, 2212, 2430
Alw26I	GTCTC	6 cut(s)	120, 275, 920, 1456, 1485, 1491
AlwI	GGATC	8 cut(s)	537, 1232, 1902, 1915, 2004, 2081, 2459, 2472
AlwNI	CAGNNNCTG	2 cut(s)	1355, 1618
AoxI	GGCC	9 cut(s)	104, 571, 858, 1148, 1195, 1442, 2443, 2452, 2614
ApoI	RAATTY	6 cut(s)	76, 551, 842, 1003, 2251, 2396
ArsI	GACNNNNNNTTYG	4 cut(s)	549, 581, 1703, 1735
Asp700I	GAANNNNTTC	2 cut(s)	1924, 2185
AspLEI	GCGC	3 cut(s)	511, 1177, 2421
AspS9I	GGNCC	5 cut(s)	104, 1195, 1442, 2317, 2367
AsuC2I	CCSGG	1 cut(s)	2504
AsuHPI	GGTGA	4 cut(s)	653, 1199, 2435, 2540
AvaII	GGWCC	2 cut(s)	2317, 2367
AxyI	CCTNAGG	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	943, 976
BalI	TGGCCA	2 cut(s)	860, 1150
BamHI	GGATCC	2 cut(s)	1907, 2464
BanII	GRGCYC	3 cut(s)	2034, 2430, 2735
BbrPI	CACGTG	1 cut(s)	890
BbsI	GAAGAC	5 cut(s)	12, 18, 755, 1713, 2295
Bbv12I	GWGCWC	3 cut(s)	2034, 2212, 2430
BccI	CCATC	3 cut(s)	597, 1159, 1871
BceAI	ACGGC	4 cut(s)	441, 709, 1313, 2185
BcgI	CGANNNNNNTGC	2 cut(s)	2018, 2052
BciT130I	CCWGG	5 cut(s)	857, 1242, 1265, 1285, 2055
BciVI	GTATCC	1 cut(s)	2145
BclI	TGATCA	1 cut(s)	1579
BcnI	CCSGG	1 cut(s)	2504
BcoDI	GTCTC	6 cut(s)	120, 275, 920, 1456, 1485, 1491
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	5 cut(s)	357, 774, 1047, 1322, 2141
BfuAI	ACCTGC	2 cut(s)	160, 1307
BfuI	GTATCC	1 cut(s)	2145
BglI	GCCNNNNNGGC	2 cut(s)	583, 2451
BmcAI	AGTACT	1 cut(s)	2066
Bme1390I	CCNGG	6 cut(s)	857, 1242, 1265, 1285, 2055, 2504
Bme18I	GGWCC	2 cut(s)	2317, 2367
BmgT120I	GGNCC	5 cut(s)	104, 1195, 1442, 2317, 2367
BmiI	GGNNCC	6 cut(s)	105, 1220, 1909, 2368, 2466, 2734
BmrFI	CCNGG	6 cut(s)	857, 1242, 1265, 1285, 2055, 2504
BpiI	GAAGAC	5 cut(s)	12, 18, 755, 1713, 2295
BpmI	CTGGAG	1 cut(s)	1487
BpuEI	CTTGAG	3 cut(s)	1921, 2692, 2719
BpuMI	CCSGG	1 cut(s)	2504
BsaAI	YACGTR	2 cut(s)	890, 2683
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	6 cut(s)	604, 973, 1016, 1921, 2223, 2388
Bse21I	CCTNAGG	1 cut(s)	51
Bse3DI	GCAATG	3 cut(s)	1350, 2242, 2719
BseBI	CCWGG	5 cut(s)	857, 1242, 1265, 1285, 2055
BseMI	GCAATG	3 cut(s)	1350, 2242, 2719
BseNI	ACTGG	6 cut(s)	604, 973, 1016, 1921, 2223, 2388
BseRI	GAGGAG	1 cut(s)	471
BseYI	CCCAGC	4 cut(s)	374, 505, 1032, 2728
BsgI	GTGCAG	3 cut(s)	480, 1341, 1604
Bsh1236I	CGCG	2 cut(s)	138, 2421
BshFI	GGCC	9 cut(s)	106, 573, 860, 1150, 1197, 1444, 2445, 2454, 2616
BsiHKAI	GWGCWC	3 cut(s)	2034, 2212, 2430
BsiSI	CCGG	2 cut(s)	639, 2503
BslFI	GGGAC	1 cut(s)	2621
BsmAI	GTCTC	6 cut(s)	120, 275, 920, 1456, 1485, 1491
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	2621
BsmI	GAATGC	2 cut(s)	690, 909
BsnI	GGCC	9 cut(s)	106, 573, 860, 1150, 1197, 1444, 2445, 2454, 2616
Bsp1286I	GDGCHC	4 cut(s)	2034, 2212, 2430, 2735
Bsp143I	GATC	8 cut(s)	529, 1237, 1579, 1907, 1996, 2086, 2464, 2474
Bsp19I	CCATGG	1 cut(s)	1145
BspANI	GGCC	9 cut(s)	106, 573, 860, 1150, 1197, 1444, 2445, 2454, 2616
BspFNI	CGCG	2 cut(s)	138, 2421
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	6 cut(s)	105, 1220, 1909, 2368, 2466, 2734
BspMAI	CTGCAG	3 cut(s)	361, 778, 1051
BspMI	ACCTGC	2 cut(s)	160, 1307
BspPI	GGATC	8 cut(s)	537, 1232, 1902, 1915, 2004, 2081, 2459, 2472
BsrDI	GCAATG	3 cut(s)	1350, 2242, 2719
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	6 cut(s)	604, 973, 1016, 1921, 2223, 2388
BssAI	RCCGGY	1 cut(s)	638
BssMI	GATC	8 cut(s)	529, 1237, 1579, 1907, 1996, 2086, 2464, 2474
BssNAI	GTATAC	2 cut(s)	346, 1336
BssT1I	CCWWGG	6 cut(s)	1145, 1222, 1941, 2074, 2524, 2537
Bst1107I	GTATAC	2 cut(s)	346, 1336
Bst2UI	CCWGG	5 cut(s)	857, 1242, 1265, 1285, 2055
Bst4CI	ACNGT	5 cut(s)	164, 718, 1187, 1554, 2016
BstAPI	GCANNNNNTGC	3 cut(s)	782, 1355, 1382
BstBAI	YACGTR	2 cut(s)	890, 2683
BstDSI	CCRYGG	2 cut(s)	1145, 1295
BstENI	CCTNNNNNAGG	2 cut(s)	54, 2374
BstFNI	CGCG	2 cut(s)	138, 2421
BstHHI	GCGC	3 cut(s)	511, 1177, 2421
BstKTI	GATC	8 cut(s)	532, 1240, 1582, 1910, 1999, 2089, 2467, 2477
BstMAI	GTCTC	6 cut(s)	120, 275, 920, 1456, 1485, 1491
BstMBI	GATC	8 cut(s)	529, 1237, 1579, 1907, 1996, 2086, 2464, 2474
BstNI	CCWGG	5 cut(s)	857, 1242, 1265, 1285, 2055
BstNSI	RCATGY	5 cut(s)	95, 272, 754, 1162, 2440
BstSCI	CCNGG	6 cut(s)	855, 1240, 1263, 1283, 2053, 2502
BstSFI	CTRYAG	5 cut(s)	357, 774, 1047, 1322, 2141
BstUI	CGCG	2 cut(s)	138, 2421
BstV2I	GAAGAC	5 cut(s)	12, 18, 755, 1713, 2295
BstX2I	RGATCY	4 cut(s)	529, 1237, 1907, 2464
BstXI	CCANNNNNNTGG	2 cut(s)	1215, 1271
BstYI	RGATCY	4 cut(s)	529, 1237, 1907, 2464
BstZ17I	GTATAC	2 cut(s)	346, 1336
Bsu36I	CCTNAGG	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	2145
BsuRI	GGCC	9 cut(s)	106, 573, 860, 1150, 1197, 1444, 2445, 2454, 2616
BtgI	CCRYGG	2 cut(s)	1145, 1295
BtgZI	GCGATG	2 cut(s)	1869, 2709
BtsI	GCAGTG	3 cut(s)	1044, 1383, 2034
BveI	ACCTGC	2 cut(s)	160, 1307
CaiI	CAGNNNCTG	2 cut(s)	1355, 1618
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	3 cut(s)	511, 1177, 2421
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	5 cut(s)	104, 1195, 1442, 2317, 2367
Csp6I	GTAC	4 cut(s)	960, 1111, 1982, 2065
CviQI	GTAC	4 cut(s)	960, 1111, 1982, 2065
DpnI	GATC	8 cut(s)	531, 1239, 1581, 1909, 1998, 2088, 2466, 2476
DpnII	GATC	8 cut(s)	529, 1237, 1579, 1907, 1996, 2086, 2464, 2474
DraIII	CACNNNGTG	1 cut(s)	259
EaeI	YGGCCR	2 cut(s)	858, 1148
Ecl136II	GAGCTC	2 cut(s)	2032, 2428
Eco130I	CCWWGG	6 cut(s)	1145, 1222, 1941, 2074, 2524, 2537
Eco147I	AGGCCT	1 cut(s)	2616
Eco24I	GRGCYC	3 cut(s)	2034, 2430, 2735
Eco47I	GGWCC	2 cut(s)	2317, 2367
Eco53kI	GAGCTC	2 cut(s)	2032, 2428
Eco57I	CTGAAG	3 cut(s)	1157, 1442, 2289
Eco72I	CACGTG	1 cut(s)	890
Eco81I	CCTNAGG	1 cut(s)	51
EcoICRI	GAGCTC	2 cut(s)	2032, 2428
EcoNI	CCTNNNNNAGG	2 cut(s)	54, 2374
EcoO109I	RGGNCCY	2 cut(s)	104, 2367
EcoRI	GAATTC	2 cut(s)	76, 2251
EcoRII	CCWGG	5 cut(s)	855, 1240, 1263, 1283, 2053
EcoT14I	CCWWGG	6 cut(s)	1145, 1222, 1941, 2074, 2524, 2537
EcoT22I	ATGCAT	2 cut(s)	270, 756
EcoT38I	GRGCYC	3 cut(s)	2034, 2430, 2735
ErhI	CCWWGG	6 cut(s)	1145, 1222, 1941, 2074, 2524, 2537
Esp3I	CGTCTC	1 cut(s)	275
FaqI	GGGAC	1 cut(s)	2621
FauI	CCCGC	2 cut(s)	94, 461
FbaI	TGATCA	1 cut(s)	1579
FblI	GTMKAC	4 cut(s)	144, 345, 1321, 1335
FriOI	GRGCYC	3 cut(s)	2034, 2430, 2735
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	3 cut(s)	510, 1176, 2420
GsaI	CCCAGC	4 cut(s)	378, 509, 1036, 2732
GsuI	CTGGAG	1 cut(s)	1487
HaeIII	GGCC	9 cut(s)	106, 573, 860, 1150, 1197, 1444, 2445, 2454, 2616
HapII	CCGG	2 cut(s)	639, 2503
HhaI	GCGC	3 cut(s)	511, 1177, 2421
Hin6I	GCGC	3 cut(s)	509, 1175, 2419
HinP1I	GCGC	3 cut(s)	509, 1175, 2419
HincII	GTYRAC	3 cut(s)	248, 2116, 2500
HindII	GTYRAC	3 cut(s)	248, 2116, 2500
HindIII	AAGCTT	1 cut(s)	2648
HpaI	GTTAAC	1 cut(s)	2116
HpaII	CCGG	2 cut(s)	639, 2503
HphI	GGTGA	4 cut(s)	653, 1199, 2435, 2540
Hpy188III	TCNNGA	8 cut(s)	53, 485, 536, 1364, 1504, 1514, 1802, 2572
Hpy99I	CGWCG	2 cut(s)	730, 733
HpyAV	CCTTC	9 cut(s)	50, 846, 1018, 1125, 1423, 1785, 2344, 2444, 2606
HpyCH4III	ACNGT	5 cut(s)	164, 718, 1187, 1554, 2016
HpyCH4IV	ACGT	2 cut(s)	889, 2682
HpySE526I	ACGT	2 cut(s)	889, 2682
HspAI	GCGC	3 cut(s)	509, 1175, 2419
Ksp22I	TGATCA	1 cut(s)	1579
KspAI	GTTAAC	1 cut(s)	2116
Kzo9I	GATC	8 cut(s)	529, 1237, 1579, 1907, 1996, 2086, 2464, 2474
LmnI	GCTCC	6 cut(s)	606, 1224, 1531, 1880, 2215, 2738
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	889, 2682
MaeIII	GTNAC	8 cut(s)	158, 259, 1276, 1890, 1935, 2379, 2528, 2683
MalI	GATC	8 cut(s)	531, 1239, 1581, 1909, 1998, 2088, 2466, 2476
MboI	GATC	8 cut(s)	529, 1237, 1579, 1907, 1996, 2086, 2464, 2474
MflI	RGATCY	4 cut(s)	529, 1237, 1907, 2464
MhlI	GDGCHC	4 cut(s)	2034, 2212, 2430, 2735
MlsI	TGGCCA	2 cut(s)	860, 1150
MluNI	TGGCCA	2 cut(s)	860, 1150
MmeI	TCCRAC	3 cut(s)	1213, 1792, 1935
Mox20I	TGGCCA	2 cut(s)	860, 1150
Mph1103I	ATGCAT	2 cut(s)	270, 756
MroXI	GAANNNNTTC	2 cut(s)	1924, 2185
MscI	TGGCCA	2 cut(s)	860, 1150
MseI	TTAA	5 cut(s)	36, 320, 870, 1896, 2115
MslI	CAYNNNNRTG	5 cut(s)	96, 273, 540, 888, 1213
Msp20I	TGGCCA	2 cut(s)	860, 1150
MspA1I	CMGCKG	5 cut(s)	464, 788, 1352, 1540, 1618
MspI	CCGG	2 cut(s)	639, 2503
MspR9I	CCNGG	6 cut(s)	857, 1242, 1265, 1285, 2055, 2504
Mva1269I	GAATGC	2 cut(s)	690, 909
MvaI	CCWGG	5 cut(s)	857, 1242, 1265, 1285, 2055
MvnI	CGCG	2 cut(s)	138, 2421
NciI	CCSGG	1 cut(s)	2504
NcoI	CCATGG	1 cut(s)	1145
NdeII	GATC	8 cut(s)	529, 1237, 1579, 1907, 1996, 2086, 2464, 2474
NlaIV	GGNNCC	6 cut(s)	105, 1220, 1909, 2368, 2466, 2734
NmuCI	GTSAC	5 cut(s)	158, 259, 2379, 2528, 2683
NsiI	ATGCAT	2 cut(s)	270, 756
NspI	RCATGY	5 cut(s)	95, 272, 754, 1162, 2440
OliI	CACNNNNGTG	1 cut(s)	1213
PaeI	GCATGC	4 cut(s)	95, 272, 754, 1162
PagI	TCATGA	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	2616
PctI	GAATGC	2 cut(s)	690, 909
PdmI	GAANNNNTTC	2 cut(s)	1924, 2185
PflMI	CCANNNNNTGG	2 cut(s)	1345, 2054
PmaCI	CACGTG	1 cut(s)	890
PmlI	CACGTG	1 cut(s)	890
Ppu21I	YACGTR	2 cut(s)	890, 2683
PpuMI	RGGWCCY	1 cut(s)	2367
PsiI	TTATAA	1 cut(s)	819
Psp124BI	GAGCTC	2 cut(s)	2034, 2430
Psp5II	RGGWCCY	1 cut(s)	2367
Psp6I	CCWGG	5 cut(s)	855, 1240, 1263, 1283, 2053
PspCI	CACGTG	1 cut(s)	890
PspFI	CCCAGC	4 cut(s)	374, 505, 1032, 2728
PspGI	CCWGG	5 cut(s)	855, 1240, 1263, 1283, 2053
PspN4I	GGNNCC	6 cut(s)	105, 1220, 1909, 2368, 2466, 2734
PspPI	GGNCC	5 cut(s)	104, 1195, 1442, 2317, 2367
PspPPI	RGGWCCY	1 cut(s)	2367
PstI	CTGCAG	3 cut(s)	361, 778, 1051
PstNI	CAGNNNCTG	2 cut(s)	1355, 1618
PsuI	RGATCY	4 cut(s)	529, 1237, 1907, 2464
PvuII	CAGCTG	5 cut(s)	464, 788, 1352, 1540, 1618
RsaI	GTAC	4 cut(s)	961, 1112, 1983, 2066
RsaNI	GTAC	4 cut(s)	960, 1111, 1982, 2065
RseI	CAYNNNNRTG	5 cut(s)	96, 273, 540, 888, 1213
SacI	GAGCTC	2 cut(s)	2034, 2430
SaqAI	TTAA	5 cut(s)	36, 320, 870, 1896, 2115
Sau3AI	GATC	8 cut(s)	529, 1237, 1579, 1907, 1996, 2086, 2464, 2474
Sau96I	GGNCC	5 cut(s)	104, 1195, 1442, 2317, 2367
ScaI	AGTACT	1 cut(s)	2066
ScrFI	CCNGG	6 cut(s)	857, 1242, 1265, 1285, 2055, 2504
SduI	GDGCHC	4 cut(s)	2034, 2212, 2430, 2735
SfcI	CTRYAG	5 cut(s)	357, 774, 1047, 1322, 2141
SfiI	GGCCNNNNNGGCC	1 cut(s)	2451
SinI	GGWCC	2 cut(s)	2317, 2367
SmiMI	CAYNNNNRTG	5 cut(s)	96, 273, 540, 888, 1213
SmlI	CTYRAG	3 cut(s)	1900, 2698, 2707
SmoI	CTYRAG	3 cut(s)	1900, 2698, 2707
SphI	GCATGC	4 cut(s)	95, 272, 754, 1162
SseBI	AGGCCT	1 cut(s)	2616
SspI	AATATT	1 cut(s)	2170
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	2 cut(s)	2034, 2430
StuI	AGGCCT	1 cut(s)	2616
StyD4I	CCNGG	6 cut(s)	855, 1240, 1263, 1283, 2053, 2502
StyI	CCWWGG	6 cut(s)	1145, 1222, 1941, 2074, 2524, 2537
TaaI	ACNGT	5 cut(s)	164, 718, 1187, 1554, 2016
TaiI	ACGT	2 cut(s)	892, 2685
TaqI	TCGA	2 cut(s)	568, 2338
TatI	WGTACW	2 cut(s)	1981, 2064
Tru1I	TTAA	5 cut(s)	36, 320, 870, 1896, 2115
Tru9I	TTAA	5 cut(s)	36, 320, 870, 1896, 2115
TseFI	GTSAC	5 cut(s)	158, 259, 2379, 2528, 2683
Tsp45I	GTSAC	5 cut(s)	158, 259, 2379, 2528, 2683
TspDTI	ATGAA	9 cut(s)	303, 524, 558, 681, 1053, 1062, 1818, 2178, 2298
TspGWI	ACGGA	1 cut(s)	299
Van91I	CCANNNNNTGG	2 cut(s)	1345, 2054
VpaK11BI	GGWCC	2 cut(s)	2317, 2367
XagI	CCTNNNNNAGG	2 cut(s)	54, 2374
XapI	RAATTY	6 cut(s)	76, 551, 842, 1003, 2251, 2396
XceI	RCATGY	5 cut(s)	95, 272, 754, 1162, 2440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1229
XmiI	GTMKAC	4 cut(s)	144, 345, 1321, 1335
XmnI	GAANNNNTTC	2 cut(s)	1924, 2185
XspI	CTAG	1 cut(s)	426
ZrmI	AGTACT	1 cut(s)	2066
Zsp2I	ATGCAT	2 cut(s)	270, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.