Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Forward (+)

10953655 .. 10960086

Gene Structure 6432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTTCAAAGTTGCTTCCGCTGAGAAGGCTCTCGAGGCTTCTTCTTCTCAAGCCTCCATCTTCGAATTTCCGACCAAGCTCCTCTCTTTTTCTAGAAGCTTCGAGGTCTCTTCACCTCTCTAATACCAGCCATGGACCTCTCCATTGGATTGCTTCCAGAAGCTTATGTTCTTCTCCCCCTTTGAATCTCAACGAAGGCCCCGCCGCTATCGATTACAGTTCTGTACTGCAGGAGGATGAATTTCATAAGCTAGCTGATTCTACAATACATGACCTGCAAGAGAAATTCGAGGGCCTACTTGGACAGGAGTATGGAGATAGCGTTCAAGTTGATGGCTTTGACATAGACTATGGGAATGAGGTATTGACCTTAAAGCTTGGGGATTTGGGCACCTATGTTTTGAACAAACAAACACCAAATAGGCAAATTTGGTTGTCTTCCCCAGTGAGTGGTCCTTTTAGATTCGATTGGGATCGGGATGCTGAAGCTTGGATTTACAGGAGGACGAAAGTTAAGTTATTGACACTTCTAGAAAGTGAGATGGAGCAATTGTGTGGTGAAGCCATCAGCCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

193

Amino Acids

21.7

Weight (kDa)

5.36

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frataxin_Cyay	PF01491	78 - 189	2.1e-35	Frataxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	452
AciI	CCGC	3 cut(s)	20, 204, 207
AclWI	GGATC	1 cut(s)	483
AcsI	RAATTY	4 cut(s)	67, 242, 287, 429
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	9, 187, 329, 406
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	7 cut(s)	81, 101, 165, 253, 257, 379, 491
AluI	AGCT	7 cut(s)	81, 101, 165, 253, 257, 379, 491
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	483
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	199, 295
ApoI	RAATTY	4 cut(s)	67, 242, 287, 429
AspS9I	GGNCC	4 cut(s)	137, 200, 295, 455
AsuHPI	GGTGA	2 cut(s)	107, 572
AsuII	TTCGAA	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	137, 455
BaeGI	GKGCMC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	432
BccI	CCATC	4 cut(s)	67, 329, 538, 575
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	3 cut(s)	95, 254, 533
BfmI	CTRYAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	2 cut(s)	137, 455
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	4 cut(s)	137, 200, 295, 455
BmiI	GGNNCC	2 cut(s)	202, 394
BmrI	ACTGGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	472
BmtI	GCTAGC	1 cut(s)	257
BmuI	ACTGGG	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	133
BsaXI	ACNNNNNCTCC	4 cut(s)	309, 339, 539, 569
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	474
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	244, 487
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	395
BshFI	GGCC	2 cut(s)	201, 297
BshNI	GGYRCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	201, 297
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	1 cut(s)	475
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	3 cut(s)	20, 204, 207
BspANI	GGCC	2 cut(s)	201, 297
BspCNI	CTCAG	1 cut(s)	15
BspDI	ATCGAT	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	202, 394
BspMAI	CTGCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	285
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	483
BspT104I	TTCGAA	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	244, 487
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	475
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 37
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	432
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	201, 297
BsuTUI	ATCGAT	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	244, 487
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	4 cut(s)	137, 200, 295, 455
ClaI	ATCGAT	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	134, 272
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	137, 455
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	34
EcoO109I	RGGNCCY	2 cut(s)	200, 295
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	2 cut(s)	137, 275
FaiI	YATR	9 cut(s)	135, 169, 249, 273, 315, 347, 354, 399, 580
FatI	CATG	2 cut(s)	133, 271
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	251, 494
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	95, 254, 533
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	201, 297
Hin1II	CATG	2 cut(s)	137, 275
HindIII	AAGCTT	4 cut(s)	99, 163, 377, 489
HinfI	GANTC	3 cut(s)	187, 260, 465
HphI	GGTGA	2 cut(s)	107, 572
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	5 cut(s)	34, 95, 159, 479, 533
HpyAV	CCTTC	2 cut(s)	21, 191
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	2 cut(s)	232, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 37
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	137, 275
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	2 cut(s)	86, 547
LpnPI	CCDG	7 cut(s)	142, 172, 218, 290, 293, 459, 487
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	3 cut(s)	95, 254, 533
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	6 cut(s)	35, 38, 54, 104, 165, 432
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	5 cut(s)	67, 242, 287, 429, 551
MmeI	TCCRAC	1 cut(s)	97
MseI	TTAA	2 cut(s)	374, 516
MspA1I	CMGCKG	1 cut(s)	22
MunI	CAATTG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	28, 37
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	475
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	137, 275
NlaIV	GGNNCC	2 cut(s)	202, 394
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	187, 260, 465
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	202, 394
PspPI	GGNCC	4 cut(s)	137, 200, 295, 455
PstI	CTGCAG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	374, 516
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	4 cut(s)	137, 200, 295, 455
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	2 cut(s)	137, 455
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	34, 50
SmoI	CTYRAG	2 cut(s)	34, 50
Sse9I	AATT	5 cut(s)	67, 242, 287, 429, 551
SsiI	CCGC	3 cut(s)	20, 204, 207
SspMI	CTAG	3 cut(s)	95, 254, 533
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	6 cut(s)	35, 65, 104, 213, 291, 468
TasI	AATT	5 cut(s)	67, 242, 287, 429, 551
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	3 cut(s)	187, 260, 465
Tru1I	TTAA	2 cut(s)	374, 516
Tru9I	TTAA	2 cut(s)	374, 516
TscAI	CASTG	1 cut(s)	453
TspDTI	ATGAA	3 cut(s)	236, 255, 567
TspRI	CASTG	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	137, 455
XapI	RAATTY	4 cut(s)	67, 242, 287, 429
XbaI	TCTAGA	2 cut(s)	94, 532
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	3 cut(s)	95, 254, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.