Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014223

Physical Location & Seq

Genomic Coordinates Reverse (-)

22637434 .. 22640348

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G227000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTTCAAAGCTGCTTCCCCTGAGAAGGCTCTCGAGGCTTCTGAAACCTCTATGTTCTGCTTCTTCTTCGAGTTTCAGGTCGTCTTTGTACCTTTTAGCAGCTTCGAAATCTCTACATCTCTCTGAGAACAGTCACGGACCTCGTTATTGGATTGATTCTAGAAGCTTCTGTTCTAGCCCTTTGAACCTCAACGATGCTGAAGTCCCCGCCGCTATCGATTATCGTTCTGTACTGCAGGAGGATGAATTTCACAAGCTAGCTGATACTACAATACATGATCTTCAAGAGAAATTTGAGGAATATGGAGATAGCGTTCAAGTTGATGGCTTTGACATAGACTATGGGAATGAGGTGCTGACCTTAAAACTCGGGGATCTCGGCACCTATGTTTTGAACAAACAAACACCAAATAGACAACTTTGGTTGTCTTCCCCAGTGAGTGGTCCTTTCAGATTTGACTGGGATCGGAATGCTCAAGCTTGGGTTTATAGAAGGACCAAAGCTCATTTATTGAAACTTCTAGAAAGCGAGATGGAGGAACTGTGTGGCGAACCAATCAGCCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004322 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006464 GO:0006790 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008198 GO:0008199 GO:0009060 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0010035 GO:0015980 GO:0016043 GO:0016226 GO:0016491 GO:0016530 GO:0016722 GO:0016724 GO:0018282 GO:0018283 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0030003 GO:0031163 GO:0031323 GO:0033554 GO:0034599 GO:0034986 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042762 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051128 GO:0051186 GO:0051193 GO:0051536 GO:0051537 GO:0051540 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071704 GO:0071840 GO:0098771 GO:0140104 GO:1901564 GO:1901700 GO:1903329

KEGG Pathways

Metabolic & Signaling

ko00860 map00860

Pfam Domains

Protein Families

Frataxin_Cyay

Protein Analysis

191

Amino Acids

21.61

Weight (kDa)

5.55

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03240
fragaria_vesca	FvH4_6g44280 FvH4_6g44280
malus_domestica	MD09G1099400.v1.1 MD17G1087700.v1.1
prunus_persica	Prupe.3G227000_v2.0.a1
pyrus_communis	pycom09g02290 pycom17g08470
rosa_chinensis	RchiOBHm_Chr2g0161141
rosa_laevigata	RLG00000021261
rosa_multiflora	Rmu_sc0006420.1_g000036
rosa_roxburghii	Rroxscaffold_2G00089090
rosa_rugosa	Rorug02G0486300
rosa_samantha	Rh2AG553100 Rh2BG566900 Rh2DG576000
rosa_wichuraiana	Rw2G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	443
AciI	CCGC	2 cut(s)	210, 213
AclWI	GGATC	2 cut(s)	384, 474
AcsI	RAATTY	2 cut(s)	248, 293
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	2 cut(s)	92, 234
AfiI	CCNNNNNNNGG	2 cut(s)	27, 443
AgsI	TTSAA	6 cut(s)	9, 187, 287, 320, 397, 517
AjuI	GAANNNNNNNTTGG	1 cut(s)	550
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	7 cut(s)	13, 104, 168, 259, 263, 482, 506
AluI	AGCT	7 cut(s)	13, 104, 168, 259, 263, 482, 506
AlwI	GGATC	2 cut(s)	384, 474
Ama87I	CYCGRG	2 cut(s)	34, 371
ApeKI	GCWGC	2 cut(s)	13, 101
ApoI	RAATTY	2 cut(s)	248, 293
AspS9I	GGNCC	3 cut(s)	140, 446, 498
AsuII	TTCGAA	1 cut(s)	107
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	2 cut(s)	34, 371
AvaII	GGWCC	3 cut(s)	140, 446, 498
BanI	GGYRCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	2 cut(s)	320, 529
BfaI	CTAG	4 cut(s)	162, 177, 260, 524
BfmI	CTRYAG	1 cut(s)	236
BisI	GCNGC	3 cut(s)	14, 102, 213
BlsI	GCNGC	3 cut(s)	15, 103, 214
Bme18I	GGWCC	3 cut(s)	140, 446, 498
BmeT110I	CYCGRG	2 cut(s)	34, 371
BmgT120I	GGNCC	3 cut(s)	140, 446, 498
BmiI	GGNNCC	1 cut(s)	385
BmrI	ACTGGG	2 cut(s)	431, 472
BmsI	GCATC	1 cut(s)	187
BmtI	GCTAGC	1 cut(s)	263
BmuI	ACTGGG	2 cut(s)	431, 472
BpiI	GAAGAC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	219
BsaXI	ACNNNNNCTCC	4 cut(s)	300, 330, 530, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 443
Bse1I	ACTGG	2 cut(s)	437, 467
BseCI	ATCGAT	1 cut(s)	219
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	27, 443
BseMII	CTCAG	2 cut(s)	14, 117
BseNI	ACTGG	2 cut(s)	437, 467
BseXI	GCAGC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	219
BsiHKCI	CYCGRG	2 cut(s)	34, 371
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	27, 443
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	478
BsoBI	CYCGRG	2 cut(s)	34, 371
Bsp119I	TTCGAA	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	280, 376, 466
BspACI	CCGC	2 cut(s)	210, 213
BspCNI	CTCAG	2 cut(s)	15, 118
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	240
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	384, 474
BspT104I	TTCGAA	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	437, 467
BssMI	GATC	3 cut(s)	280, 376, 466
Bst4CI	ACNGT	2 cut(s)	134, 546
BstBI	TTCGAA	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	23, 126
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	3 cut(s)	283, 379, 469
BstMBI	GATC	3 cut(s)	280, 376, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	3 cut(s)	140, 446, 498
ClaI	ATCGAT	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	91, 233
CviAII	CATG	1 cut(s)	278
CviQI	GTAC	2 cut(s)	91, 233
DdeI	CTNAG	2 cut(s)	23, 126
DpnI	GATC	3 cut(s)	282, 378, 468
DpnII	GATC	3 cut(s)	280, 376, 466
Eco47I	GGWCC	3 cut(s)	140, 446, 498
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	2 cut(s)	34, 371
FaeI	CATG	1 cut(s)	281
FaiI	YATR	8 cut(s)	55, 279, 306, 338, 345, 390, 492, 571
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	14, 102, 213
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	14, 102, 213
FspBI	CTAG	4 cut(s)	162, 177, 260, 524
GluI	GCNGC	3 cut(s)	14, 102, 213
Hin1II	CATG	1 cut(s)	281
HindIII	AAGCTT	2 cut(s)	166, 480
HinfI	GANTC	1 cut(s)	158
Hpy188I	TCNGA	4 cut(s)	45, 127, 455, 471
Hpy188III	TCNNGA	4 cut(s)	34, 162, 287, 524
HpyAV	CCTTC	2 cut(s)	21, 489
HpyCH4III	ACNGT	2 cut(s)	134, 546
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	23, 126
Hsp92II	CATG	1 cut(s)	281
Kzo9I	GATC	3 cut(s)	280, 376, 466
LpnPI	CCDG	5 cut(s)	35, 64, 224, 448, 450
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	4 cut(s)	162, 177, 260, 524
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	282, 378, 468
MboI	GATC	3 cut(s)	280, 376, 466
MboII	GAAGA	4 cut(s)	57, 60, 275, 423
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	2 cut(s)	248, 293
MnlI	CCTC	8 cut(s)	30, 60, 153, 200, 235, 292, 346, 532
MseI	TTAA	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	280, 376, 466
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	34
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	443
PkrI	GCNGC	3 cut(s)	15, 103, 214
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	3 cut(s)	140, 446, 498
PstI	CTGCAG	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	2 cut(s)	92, 234
RsaNI	GTAC	2 cut(s)	91, 233
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	3 cut(s)	14, 102, 213
Sau3AI	GATC	3 cut(s)	280, 376, 466
Sau96I	GGNCC	3 cut(s)	140, 446, 498
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	236
Sfr274I	CTCGAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	107
SinI	GGWCC	3 cut(s)	140, 446, 498
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	34, 477
SmoI	CTYRAG	2 cut(s)	34, 477
Sse9I	AATT	2 cut(s)	248, 293
SsiI	CCGC	2 cut(s)	210, 213
SspMI	CTAG	4 cut(s)	162, 177, 260, 524
TaaI	ACNGT	2 cut(s)	134, 546
TaqI	TCGA	4 cut(s)	35, 71, 107, 219
TasI	AATT	2 cut(s)	248, 293
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	13, 101
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	261, 558
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	444
Van91I	CCANNNNNTGG	1 cut(s)	443
VpaK11BI	GGWCC	3 cut(s)	140, 446, 498
XapI	RAATTY	2 cut(s)	248, 293
XbaI	TCTAGA	2 cut(s)	161, 523
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	4 cut(s)	162, 177, 260, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.