AT4G03270

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011478
Physical Location & Seq
Reverse (-)
1431844 .. 1433861
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03270.1

Sequence Viewer

Length: 909 bp
ATGGAGTTTCATCTTGAACATCCTCTCTCACATTCTTCACTCCACAATAACTTCAACGACGACACAGACTATGAAACTTTACCACACTCTCTCTTCCTCGTCGAGTTTCAACACATGCCTTCTTCTCATTACTTCCATAGCCTCAAGTCCTCTGCTTTTCTTCTCTCTAATCGAAACCAAGCCATTTCTTCAATCACTCAGTATTCAAGAAAATTCGACGACCCATCTCTGACGTATCTTGCTGTGAATTATCTAGACAGGTTCTTGTCTAGCGAAGATATGCCGCAGTCAAAGCCCTGGATTCTTAAGCTCATATCTCTCTCTTGTGTCTCTTTGTCTGCAAAAATGAGGAAACCAGACATGTCTGTTTCTGATCTTCCGGTGGAAGGTGAGTTTTTTGATGCTCAGATGATAGAGAGAATGGAGAATGTGATTCTAGGAGCTCTTAAATGGAGGATGCGCTCTGTTACTCCTTTCTCCTTTTTGGCCTTTTTCATTAGTCTCTTTGAGCTCAAAGAAGAAGATCCTTTACTACTAAAACATTCCCTCAAATCTCAAACCAGTGATCTTACTTTCAGTCTTCAACATGATATCAGTTTCCTCGAGTTTAAACCATCGGTGATTGCAGGCGCGGCACTTCTCTTTGCTTCTTTCGAGCTCTGTCCTCTACAGTTTCCATGTTTCAGTAACAGAATCAACCAATGCACATATGTAAATAAGGATGAGTTAATGGAGTGTTACAAAGCAATACAAGAGAGAGATATTATAGTTGGAGAAAACGAAGGAAGCACTGAAACAGCAGTAAATGTGCTTGATCAGCAATTCTCGAGTTGTGAAAGCGATAAGAGCATCACAATCACAGCTTCTTCTTCACCTAAGAGGAGGAAAACTAGTACTCGTCGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

302

Amino Acids

34.67

Weight (kDa)

5.59

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 31 - 154 1.8e-21 Cyclin, N-terminal domain
Cyclin_C PF02984 156 - 258 4e-12 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03270 AT4G03270
fragaria_vesca FvH4_6g44360
malus_domestica MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis pycom09g02220 pycom17g08390
rosa_chinensis RchiOBHm_Chr2g0161291
rosa_laevigata RLG00000021276
rosa_multiflora Rmu_ssc0000196.1_g000006
rosa_roxburghii Rroxscaffold_2G00088940
rosa_rugosa Rorug02G0488000 Rorug02G0488100
rosa_samantha Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana Rw2G045890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 632
AciI CCGC 2 cut(s) 284, 632
AclWI GGATC 1 cut(s) 518
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 895
AfiI CCNNNNNNNGG 1 cut(s) 386
AflII CTTAAG 1 cut(s) 305
AflIII ACRYGT 1 cut(s) 360
AgsI TTSAA 6 cut(s) 17, 55, 110, 192, 207, 584
AhlI ACTAGT 1 cut(s) 890
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 5 cut(s) 310, 443, 511, 658, 863
AluI AGCT 5 cut(s) 310, 443, 511, 658, 863
Alw21I GWGCWC 3 cut(s) 445, 513, 660
Alw26I GTCTC 2 cut(s) 334, 506
AlwI GGATC 1 cut(s) 518
Ama87I CYCGRG 2 cut(s) 602, 826
AoxI GGCC 1 cut(s) 486
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 2 cut(s) 462, 632
AsuHPI GGTGA 3 cut(s) 401, 631, 864
AvaI CYCGRG 2 cut(s) 602, 826
BanII GRGCYC 3 cut(s) 445, 513, 660
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 3 cut(s) 445, 513, 660
BccI CCATC 2 cut(s) 232, 622
BciT130I CCWGG 1 cut(s) 298
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 2 cut(s) 334, 506
BcuI ACTAGT 1 cut(s) 890
BfaI CTAG 4 cut(s) 254, 270, 437, 891
BfmI CTRYAG 1 cut(s) 668
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 2 cut(s) 284, 633
BlsI GCNGC 2 cut(s) 285, 634
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 1 cut(s) 298
BmeT110I CYCGRG 2 cut(s) 602, 826
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 3 cut(s) 391, 447, 858
BpiI GAAGAC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 561
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 3 cut(s) 19, 462, 727
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 212, 419
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 895
Bsh1236I CGCG 1 cut(s) 632
BshFI GGCC 1 cut(s) 488
BsiHKAI GWGCWC 3 cut(s) 445, 513, 660
BsiHKCI CYCGRG 2 cut(s) 602, 826
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 2 cut(s) 334, 506
BsnI GGCC 1 cut(s) 488
BsoBI CYCGRG 2 cut(s) 602, 826
Bsp1286I GDGCHC 3 cut(s) 445, 513, 660
Bsp143I GATC 4 cut(s) 373, 523, 565, 814
BspACI CCGC 2 cut(s) 284, 632
BspANI GGCC 1 cut(s) 488
BspCNI CTCAG 2 cut(s) 211, 418
BspFNI CGCG 1 cut(s) 632
BspPI GGATC 1 cut(s) 518
BspTI CTTAAG 1 cut(s) 305
BsrI ACTGG 1 cut(s) 561
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 4 cut(s) 373, 523, 565, 814
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 1 cut(s) 98
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 628
BstDEI CTNAG 3 cut(s) 198, 405, 876
BstF5I GGATG 3 cut(s) 19, 462, 727
BstFNI CGCG 1 cut(s) 632
BstHHI GCGC 2 cut(s) 462, 632
BstKTI GATC 4 cut(s) 376, 526, 568, 817
BstMAI GTCTC 2 cut(s) 334, 506
BstMBI GATC 4 cut(s) 373, 523, 565, 814
BstMWI GCNNNNNNNGC 4 cut(s) 292, 632, 817, 846
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 2 cut(s) 118, 364
BstSCI CCNGG 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 668
BstUI CGCG 1 cut(s) 632
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 1 cut(s) 488
BtsCI GGATG 3 cut(s) 19, 462, 727
BtsIMutI CAGTG 2 cut(s) 568, 789
Cac8I GCNNGC 1 cut(s) 628
CfoI GCGC 2 cut(s) 462, 632
Csp6I GTAC 1 cut(s) 894
CviAII CATG 4 cut(s) 115, 361, 587, 678
CviJI RGCY 9 cut(s) 141, 182, 295, 310, 443, 488, 511, 658, 863
CviKI_1 RGCY 9 cut(s) 141, 182, 295, 310, 443, 488, 511, 658, 863
CviQI GTAC 1 cut(s) 894
DdeI CTNAG 3 cut(s) 198, 405, 876
DpnI GATC 4 cut(s) 375, 525, 567, 816
DpnII GATC 4 cut(s) 373, 523, 565, 814
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Ecl136II GAGCTC 3 cut(s) 443, 511, 658
Eco24I GRGCYC 3 cut(s) 445, 513, 660
Eco32I GATATC 1 cut(s) 592
Eco53kI GAGCTC 3 cut(s) 443, 511, 658
Eco88I CYCGRG 2 cut(s) 602, 826
EcoICRI GAGCTC 3 cut(s) 443, 511, 658
EcoRII CCWGG 1 cut(s) 296
EcoRV GATATC 1 cut(s) 592
EcoT38I GRGCYC 3 cut(s) 445, 513, 660
FaeI CATG 4 cut(s) 118, 364, 590, 681
FatI CATG 4 cut(s) 114, 360, 586, 677
FauNDI CATATG 1 cut(s) 709
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 2 cut(s) 284, 633
FokI GGATG 3 cut(s) 6, 469, 734
FriOI GRGCYC 3 cut(s) 445, 513, 660
Fsp4HI GCNGC 2 cut(s) 284, 633
FspBI CTAG 4 cut(s) 254, 270, 437, 891
GlaI GCGC 2 cut(s) 461, 631
GluI GCNGC 2 cut(s) 284, 633
HaeIII GGCC 1 cut(s) 488
HapII CCGG 1 cut(s) 380
HhaI GCGC 2 cut(s) 462, 632
Hin1II CATG 4 cut(s) 118, 364, 590, 681
Hin6I GCGC 2 cut(s) 460, 630
HinP1I GCGC 2 cut(s) 460, 630
HinfI GANTC 3 cut(s) 301, 433, 693
HpaII CCGG 1 cut(s) 380
HphI GGTGA 3 cut(s) 401, 631, 864
Hpy188I TCNGA 3 cut(s) 231, 373, 408
Hpy188III TCNNGA 4 cut(s) 14, 207, 254, 826
Hpy99I CGWCG 4 cut(s) 62, 104, 221, 903
HpyAV CCTTC 3 cut(s) 129, 380, 776
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 341, 626, 705
HpyF10VI GCNNNNNNNGC 4 cut(s) 292, 632, 817, 846
HpyF3I CTNAG 3 cut(s) 198, 405, 876
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 4 cut(s) 118, 364, 590, 681
HspAI GCGC 2 cut(s) 460, 630
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 4 cut(s) 373, 523, 565, 814
LmnI GCTCC 1 cut(s) 440
LpnPI CCDG 7 cut(s) 244, 283, 310, 369, 393, 574, 612
LweI GCATC 3 cut(s) 391, 447, 858
MaeI CTAG 4 cut(s) 254, 270, 437, 891
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 4 cut(s) 466, 686, 737, 902
MalI GATC 4 cut(s) 375, 525, 567, 816
MboI GATC 4 cut(s) 373, 523, 565, 814
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 3 cut(s) 445, 513, 660
MluCI AATT 3 cut(s) 212, 247, 821
MmeI TCCRAC 1 cut(s) 751
MseI TTAA 4 cut(s) 306, 447, 609, 728
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 298
MssI GTTTAAAC 1 cut(s) 610
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 4 cut(s) 292, 632, 817, 846
NdeI CATATG 1 cut(s) 709
NdeII GATC 4 cut(s) 373, 523, 565, 814
NlaIII CATG 4 cut(s) 118, 364, 590, 681
NspI RCATGY 2 cut(s) 118, 364
PaeR7I CTCGAG 2 cut(s) 602, 826
PciI ACATGT 1 cut(s) 360
PfeI GAWTC 3 cut(s) 301, 433, 693
PkrI GCNGC 2 cut(s) 285, 634
PmeI GTTTAAAC 1 cut(s) 610
PscI ACATGT 1 cut(s) 360
Psp124BI GAGCTC 3 cut(s) 445, 513, 660
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspXI VCTCGAGB 1 cut(s) 602
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 1 cut(s) 895
RsaNI GTAC 1 cut(s) 894
SacI GAGCTC 3 cut(s) 445, 513, 660
SaqAI TTAA 4 cut(s) 306, 447, 609, 728
SatI GCNGC 2 cut(s) 284, 633
Sau3AI GATC 4 cut(s) 373, 523, 565, 814
ScaI AGTACT 1 cut(s) 895
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 3 cut(s) 445, 513, 660
SetI ASST 9 cut(s) 236, 263, 312, 391, 445, 513, 660, 865, 877
SfaNI GCATC 3 cut(s) 391, 447, 858
SfcI CTRYAG 1 cut(s) 668
Sfr274I CTCGAG 2 cut(s) 602, 826
SlaI CTCGAG 2 cut(s) 602, 826
SmlI CTYRAG 4 cut(s) 143, 305, 602, 826
SmoI CTYRAG 4 cut(s) 143, 305, 602, 826
SpeI ACTAGT 1 cut(s) 890
Sse9I AATT 3 cut(s) 212, 247, 821
SsiI CCGC 2 cut(s) 284, 632
SspMI CTAG 4 cut(s) 254, 270, 437, 891
SstI GAGCTC 3 cut(s) 445, 513, 660
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 1 cut(s) 236
TaqI TCGA 6 cut(s) 102, 172, 216, 603, 654, 827
TasI AATT 3 cut(s) 212, 247, 821
TatI WGTACW 1 cut(s) 893
TauI GCSGC 2 cut(s) 286, 635
TfiI GAWTC 3 cut(s) 301, 433, 693
Tru1I TTAA 4 cut(s) 306, 447, 609, 728
Tru9I TTAA 4 cut(s) 306, 447, 609, 728
TscAI CASTG 2 cut(s) 568, 796
TspDTI ATGAA 2 cut(s) 87, 484
TspRI CASTG 2 cut(s) 568, 796
Vha464I CTTAAG 1 cut(s) 305
XapI RAATTY 1 cut(s) 212
XbaI TCTAGA 1 cut(s) 253
XceI RCATGY 2 cut(s) 118, 364
XhoI CTCGAG 2 cut(s) 602, 826
XspI CTAG 4 cut(s) 254, 270, 437, 891
ZrmI AGTACT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.