Rroxscaffold_2G00088940

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011478
Physical Location & Seq
Forward (+)
10800520 .. 10802624
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088940.1

Sequence Viewer

Length: 969 bp
ATGGAGTTCGACCTTGAAAACCCACTAACAATTTCCCATGATATCCACTCTGACTCGGTCACTTCTCTGTTCTCCATTGAATCCGATCACATGCCATCTGAGAATTACTTCCAAACCCTTCAAGCTGGAGACTTAGACATCTCTGTTCGAAGGGAAGCCATGGCTTCAATCTCACAGCTTTGTTGTAACTCTGATAACTTCTTATCCTACCTTGCTGTCAATTATCTTGATCGGTTCTTGTCCTGCCAAGGAAAGCTGCAACCGAAGCCTTGGATCATCAAGCTCCTTGCAATCTCCTGCGTTTCTTTAGCTGCCAAGATGAAGAAAACAGATTTTTCTCTTCTTGATTTTCAGAGTGACGGAGGTATCATTTTTGATACTCGAACGATAGAGAGAATGGAGTTCCTGATTTTGGGAGCTCTAAAATGGAGAATGCGGTCCATAACTCCCTTCTCTTTCATTCTCTTCTTCATTTCTTTGTTCAAGCTTGAAATTCCTCCATTGAGGCAAGCTCTCAAAGCCAGAGCCACCCAGATCATCCTCAAAGCTCAAAACGATATAAAGCTTTTTGTGTTCAAGCCATCAATAATTGCAGCCTCTGCTCTCCTCTCTGCTTCTCATGAGTTATTCCCAATGCAATGTCCCTGCTTTAAAAAAGCACTATCCAACTGTTCCTATGTAAACAAGATAACTTTGCTGCAATGCTACAATTGTATGCAAGACAGTGTGGTAGATGAGTACAATTCAGTCTTGGAGATGGTGTCTAGCTCAGAGACACCGGCCAATGTGTTGGATCATACTTTTTCAAGCTCTGCAGACAGTGGAAGAACCACAGTGACCAGCATTACCACTTTAAAATTGGAGAGGGACATCAAGAGGAGGAAATTTAGTGAATATTGTAAAGATCATCACCGCAGTGTTGTCCAAATTAATTACTCATCAGATCCAGCAACACTCAGGCCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

322

Amino Acids

36.45

Weight (kDa)

7.02

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 20 - 146 1.9e-16 Cyclin, N-terminal domain
Cyclin_C PF02984 149 - 246 6.5e-08 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03270 AT4G03270
fragaria_vesca FvH4_6g44360
malus_domestica MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis pycom09g02220 pycom17g08390
rosa_chinensis RchiOBHm_Chr2g0161291
rosa_laevigata RLG00000021276
rosa_multiflora Rmu_ssc0000196.1_g000006
rosa_roxburghii Rroxscaffold_2G00088940
rosa_rugosa Rorug02G0488000 Rorug02G0488100
rosa_samantha Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana Rw2G045890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 436, 913
AclWI GGATC 3 cut(s) 281, 801, 938
AcoI YGGCCR 1 cut(s) 780
AcsI RAATTY 2 cut(s) 492, 884
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 8 cut(s) 17, 80, 122, 168, 484, 491, 577, 807
AleI CACNNNNGTG 1 cut(s) 915
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 123, 767
AlwI GGATC 3 cut(s) 281, 801, 938
AlwNI CAGNNNCTG 1 cut(s) 599
AoxI GGCC 2 cut(s) 780, 959
ApeKI GCWGC 4 cut(s) 256, 311, 593, 697
ApoI RAATTY 2 cut(s) 492, 884
AseI ATTAAT 1 cut(s) 930
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 902
AsuII TTCGAA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 438
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BanII GRGCYC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 4 cut(s) 243, 298, 605, 684
BccI CCATC 3 cut(s) 103, 589, 751
BcoDI GTCTC 2 cut(s) 123, 767
BfaI CTAG 2 cut(s) 765, 963
BfmI CTRYAG 1 cut(s) 813
BisI GCNGC 4 cut(s) 257, 312, 594, 698
BlsI GCNGC 4 cut(s) 258, 313, 595, 699
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpmI CTGGAG 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 159, 247, 269
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 778
Bse3DI GCAATG 2 cut(s) 644, 707
BseDI CCNNGG 3 cut(s) 159, 247, 269
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 2 cut(s) 644, 707
BseMII CTCAG 2 cut(s) 90, 783
BseRI GAGGAG 2 cut(s) 596, 892
BseXI GCAGC 4 cut(s) 243, 298, 605, 684
BshFI GGCC 2 cut(s) 782, 961
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 2 cut(s) 627, 881
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 123, 767
BsmFI GGGAC 2 cut(s) 627, 881
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 2 cut(s) 782, 961
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 7 cut(s) 85, 229, 273, 534, 793, 904, 943
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 2 cut(s) 436, 913
BspANI GGCC 2 cut(s) 782, 961
BspCNI CTCAG 3 cut(s) 91, 782, 969
BspHI TCATGA 1 cut(s) 619
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 3 cut(s) 281, 801, 938
BspT104I TTCGAA 1 cut(s) 148
BsrDI GCAATG 2 cut(s) 644, 707
BsrFI RCCGGY 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 3 cut(s) 159, 247, 269
BssMI GATC 7 cut(s) 85, 229, 273, 534, 793, 904, 943
BssT1I CCWWGG 3 cut(s) 159, 247, 269
Bst4CI ACNGT 4 cut(s) 671, 725, 821, 835
Bst6I CTCTTC 2 cut(s) 345, 470
BstAPI GCANNNNNTGC 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 4 cut(s) 99, 133, 769, 956
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 537
BstKTI GATC 7 cut(s) 88, 232, 276, 537, 796, 907, 946
BstMAI GTCTC 2 cut(s) 123, 767
BstMBI GATC 7 cut(s) 85, 229, 273, 534, 793, 904, 943
BstMWI GCNNNNNNNGC 3 cut(s) 265, 518, 599
BstNSI RCATGY 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 813
BstV1I GCAGC 4 cut(s) 243, 298, 605, 684
BstX2I RGATCY 1 cut(s) 943
BstXI CCANNNNNNTGG 1 cut(s) 790
BstYI RGATCY 1 cut(s) 943
BsuRI GGCC 2 cut(s) 782, 961
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 537
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 4 cut(s) 730, 826, 840, 922
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 739
CviAII CATG 4 cut(s) 38, 91, 160, 620
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 4 cut(s) 99, 133, 769, 956
DpnI GATC 7 cut(s) 87, 231, 275, 536, 795, 906, 945
DpnII GATC 7 cut(s) 85, 229, 273, 534, 793, 904, 943
DraI TTTAAA 2 cut(s) 652, 855
EaeI YGGCCR 1 cut(s) 780
Eam1104I CTCTTC 2 cut(s) 345, 470
EarI CTCTTC 2 cut(s) 345, 470
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 3 cut(s) 159, 247, 269
Eco147I AGGCCT 1 cut(s) 961
Eco24I GRGCYC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 419
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 3 cut(s) 159, 247, 269
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 3 cut(s) 159, 247, 269
FaeI CATG 4 cut(s) 41, 94, 163, 623
FaiI YATR 9 cut(s) 39, 92, 161, 443, 560, 621, 678, 716, 798
FaqI GGGAC 2 cut(s) 627, 881
FatI CATG 4 cut(s) 37, 90, 159, 619
Fnu4HI GCNGC 4 cut(s) 257, 312, 594, 698
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 257, 312, 594, 698
FspBI CTAG 2 cut(s) 765, 963
GluI GCNGC 4 cut(s) 257, 312, 594, 698
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 2 cut(s) 782, 961
HapII CCGG 1 cut(s) 779
Hin1II CATG 4 cut(s) 41, 94, 163, 623
HindIII AAGCTT 2 cut(s) 485, 563
HinfI GANTC 2 cut(s) 53, 80
HpaII CCGG 1 cut(s) 779
HphI GGTGA 1 cut(s) 902
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 7 cut(s) 52, 85, 100, 193, 354, 772, 943
Hpy188III TCNNGA 5 cut(s) 227, 344, 406, 620, 874
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 3 cut(s) 128, 144, 460
HpyCH4III ACNGT 4 cut(s) 671, 725, 821, 835
HpyCH4V TGCA 7 cut(s) 259, 290, 593, 637, 700, 718, 815
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 518, 599
HpyF3I CTNAG 4 cut(s) 99, 133, 769, 956
Hsp92II CATG 4 cut(s) 41, 94, 163, 623
Kzo9I GATC 7 cut(s) 85, 229, 273, 534, 793, 904, 943
LmnI GCTCC 2 cut(s) 288, 416
Lsp1109I GCAGC 4 cut(s) 243, 298, 605, 684
MaeI CTAG 2 cut(s) 765, 963
MaeIII GTNAC 4 cut(s) 58, 185, 356, 835
MalI GATC 7 cut(s) 87, 231, 275, 536, 795, 906, 945
MboI GATC 7 cut(s) 85, 229, 273, 534, 793, 904, 943
MboII GAAGA 5 cut(s) 332, 334, 457, 460, 837
MfeI CAATTG 1 cut(s) 709
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 1 cut(s) 421
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 690, 771
MnlI CCTC 9 cut(s) 356, 498, 507, 551, 607, 617, 858, 870, 873
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 3 cut(s) 651, 854, 930
MslI CAYNNNNRTG 1 cut(s) 915
MspI CCGG 1 cut(s) 779
MunI CAATTG 1 cut(s) 709
Mva1269I GAATGC 1 cut(s) 438
MwoI GCNNNNNNNGC 3 cut(s) 265, 518, 599
NcoI CCATGG 1 cut(s) 159
NdeII GATC 7 cut(s) 85, 229, 273, 534, 793, 904, 943
NlaIII CATG 4 cut(s) 41, 94, 163, 623
NmuCI GTSAC 3 cut(s) 58, 356, 835
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 915
PagI TCATGA 1 cut(s) 619
PceI AGGCCT 1 cut(s) 961
PctI GAATGC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 258, 313, 595, 699
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 421
PspPI GGNCC 1 cut(s) 438
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 943
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
RseI CAYNNNNRTG 1 cut(s) 915
SacI GAGCTC 1 cut(s) 421
SaqAI TTAA 3 cut(s) 651, 854, 930
SatI GCNGC 4 cut(s) 257, 312, 594, 698
Sau3AI GATC 7 cut(s) 85, 229, 273, 534, 793, 904, 943
Sau96I GGNCC 1 cut(s) 438
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 421
SfcI CTRYAG 1 cut(s) 813
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 915
SseBI AGGCCT 1 cut(s) 961
SsiI CCGC 2 cut(s) 436, 913
SspI AATATT 1 cut(s) 896
SspMI CTAG 2 cut(s) 765, 963
SstI GAGCTC 1 cut(s) 421
StuI AGGCCT 1 cut(s) 961
StyI CCWWGG 3 cut(s) 159, 247, 269
TaaI ACNGT 4 cut(s) 671, 725, 821, 835
TaqI TCGA 3 cut(s) 9, 148, 382
TaqII GACCGA 1 cut(s) 46
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 3 cut(s) 651, 854, 930
Tru9I TTAA 3 cut(s) 651, 854, 930
TscAI CASTG 4 cut(s) 730, 826, 840, 922
TseFI GTSAC 3 cut(s) 58, 356, 835
TseI GCWGC 4 cut(s) 256, 311, 593, 697
Tsp45I GTSAC 3 cut(s) 58, 356, 835
TspDTI ATGAA 3 cut(s) 335, 448, 460
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 4 cut(s) 730, 826, 840, 922
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 438
VspI ATTAAT 1 cut(s) 930
XapI RAATTY 2 cut(s) 492, 884
XceI RCATGY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 2 cut(s) 765, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.