FvH4_6g44360

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011478
Physical Location & Seq
Reverse (-)
34181081 .. 34183499
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44360.t1

Sequence Viewer

Length: 969 bp
ATGGAGTTCAACCTTGAAAACCCACTAACAATTTCCCATGATATCCACTCTGACTCGGTCACTTCTCTGTTCTCCATTGAATCCGATCACATGCCATCCGAGAATTACTTCCAAACCCTTCAAGCTGGAGACTTTGACATCTCTATTCGAAGGGAAGCAATTGCTTCAATCTCACAGCTCTGTTGTAACTCTGATAAATTCTTATCTTACCTCGCTGTCAATTATCTTGATCGGTTCTTGTCCTGCCAAGAAAAGCTGCAACCAAAGCCTTGGATCATAAAGCTCCTCGCAATTTCCTGCGTTTCTCTAGCAGCCAAGATGAAGAAAACAGCCTTCTCTATCCTTGATTTTCAGAGTGATGGAGGTATCATTTTCGATACTCGAACTATAGAGAGAATGGAGTTTCTGATTTTAGGAGCTCTAAAATGGAGAATGCGGTCCATAACTCCCTTCTCTTTCATTCTTTTCTTCATTTCTTTGTTCAAGCTTGAAGATCCTCCATTGAGGCAAGCTCTCAAAGCCAGAGCCACCCAGATCATCTTTAAAGCTCAAAATGATATGAAGCTTTTGGTGTTCAAGCCATCAATAATTGCAGCCTCTGGTCTCCTCTTTGCTTCTCATGAGTTATTCCCCATGCAAAGCCCCTGCTTTAAAAAAGCGCTGTCTAACTGTTCCTATGTAAATAAGGTAACTTTGCTGCAATGCTACAACTGTATGCAAGACAGTGTGGTAGATGAGTACGATTCAGTGTTGGAGATGGTGTCTAGCTCAGTGACACCGGCCAATGTGTTGGATCAGACTTTTTCAAGCTCTGCAGAGAGTGGAAGAACCACAGTGACTAGCGTTACCACTTTAAAATTGGAGAGGGACATCAAGAGGAGGAAAATTAGTGAATATTGTAAAGATCATCACGACAGAGTTGTCCAAATTAATTTCTCATCAGATCCAGAACCGCTCAGGCCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

323

Amino Acids

36.55

Weight (kDa)

6.6

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 20 - 146 3.7e-17 Cyclin, N-terminal domain
Cyclin_C PF02984 149 - 245 1.1e-07 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03270 AT4G03270
fragaria_vesca FvH4_6g44360
malus_domestica MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis pycom09g02220 pycom17g08390
rosa_chinensis RchiOBHm_Chr2g0161291
rosa_laevigata RLG00000021276
rosa_multiflora Rmu_ssc0000196.1_g000006
rosa_roxburghii Rroxscaffold_2G00088940
rosa_rugosa Rorug02G0488000 Rorug02G0488100
rosa_samantha Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana Rw2G045890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 920
AccBSI CCGCTC 1 cut(s) 955
AciI CCGC 2 cut(s) 436, 953
AclWI GGATC 4 cut(s) 281, 488, 801, 938
AcoI YGGCCR 1 cut(s) 780
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 740
AfeI AGCGCT 1 cut(s) 660
AgsI TTSAA 9 cut(s) 10, 17, 80, 122, 168, 484, 491, 577, 807
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 123, 608
AlwI GGATC 4 cut(s) 281, 488, 801, 938
AlwNI CAGNNNCTG 1 cut(s) 599
Aor51HI AGCGCT 1 cut(s) 660
AoxI GGCC 2 cut(s) 780, 959
ApeKI GCWGC 4 cut(s) 256, 311, 593, 697
ApoI RAATTY 1 cut(s) 197
AseI ATTAAT 1 cut(s) 930
Asp700I GAANNNNTTC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 1 cut(s) 438
AsuII TTCGAA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 4 cut(s) 243, 323, 605, 684
BccI CCATC 4 cut(s) 103, 353, 589, 751
BcoDI GTCTC 2 cut(s) 123, 608
BfaI CTAG 4 cut(s) 308, 765, 840, 963
BfmI CTRYAG 2 cut(s) 387, 813
BfoI RGCGCY 1 cut(s) 662
BisI GCNGC 4 cut(s) 257, 312, 594, 698
BlsI GCNGC 4 cut(s) 258, 313, 595, 699
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 956
Bpu14I TTCGAA 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bse118I RCCGGY 1 cut(s) 778
Bse3DI GCAATG 1 cut(s) 707
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 707
BseMII CTCAG 1 cut(s) 783
BseRI GAGGAG 3 cut(s) 275, 596, 892
BseXI GCAGC 4 cut(s) 243, 323, 605, 684
BshFI GGCC 2 cut(s) 782, 961
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 1 cut(s) 881
BsmAI GTCTC 2 cut(s) 123, 608
BsmFI GGGAC 1 cut(s) 881
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 2 cut(s) 782, 961
Bso31I GGTCTC 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
BspACI CCGC 2 cut(s) 436, 953
BspANI GGCC 2 cut(s) 782, 961
BspCNI CTCAG 2 cut(s) 782, 969
BspHI TCATGA 1 cut(s) 619
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 4 cut(s) 281, 488, 801, 938
BspT104I TTCGAA 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 608
BsrBI CCGCTC 1 cut(s) 955
BsrDI GCAATG 1 cut(s) 707
BsrFI RCCGGY 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
BssT1I CCWWGG 1 cut(s) 269
Bst4CI ACNGT 4 cut(s) 671, 713, 725, 835
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 769, 956
BstF5I GGATG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 662
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 8 cut(s) 88, 232, 276, 496, 537, 796, 907, 946
BstMAI GTCTC 2 cut(s) 123, 608
BstMBI GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
BstMWI GCNNNNNNNGC 2 cut(s) 265, 518
BstNSI RCATGY 1 cut(s) 94
BstSFI CTRYAG 2 cut(s) 387, 813
BstV1I GCAGC 4 cut(s) 243, 323, 605, 684
BstX2I RGATCY 2 cut(s) 493, 943
BstXI CCANNNNNNTGG 2 cut(s) 270, 790
BstYI RGATCY 2 cut(s) 493, 943
BsuRI GGCC 2 cut(s) 782, 961
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 4 cut(s) 730, 753, 777, 840
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 739
CviAII CATG 4 cut(s) 38, 91, 620, 634
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 2 cut(s) 769, 956
DpnI GATC 8 cut(s) 87, 231, 275, 495, 536, 795, 906, 945
DpnII GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
DraI TTTAAA 3 cut(s) 544, 652, 855
DrdI GACNNNNNNGTC 1 cut(s) 920
DseDI GACNNNNNNGTC 1 cut(s) 920
EaeI YGGCCR 1 cut(s) 780
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 269
Eco147I AGGCCT 1 cut(s) 961
Eco24I GRGCYC 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 608
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 438
Eco47III AGCGCT 1 cut(s) 660
Eco53kI GAGCTC 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 419
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 4 cut(s) 41, 94, 623, 637
FaqI GGGAC 1 cut(s) 881
FatI CATG 4 cut(s) 37, 90, 619, 633
Fnu4HI GCNGC 4 cut(s) 257, 312, 594, 698
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 257, 312, 594, 698
FspBI CTAG 4 cut(s) 308, 765, 840, 963
GlaI GCGC 1 cut(s) 660
GluI GCNGC 4 cut(s) 257, 312, 594, 698
GsuI CTGGAG 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 662
HaeIII GGCC 2 cut(s) 782, 961
HapII CCGG 1 cut(s) 779
HhaI GCGC 1 cut(s) 661
Hin1II CATG 4 cut(s) 41, 94, 623, 637
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HindIII AAGCTT 2 cut(s) 485, 563
HinfI GANTC 3 cut(s) 53, 80, 743
HpaII CCGG 1 cut(s) 779
Hpy188I TCNGA 8 cut(s) 52, 85, 100, 193, 354, 408, 798, 943
Hpy188III TCNNGA 5 cut(s) 227, 620, 874, 911, 947
HpyAV CCTTC 4 cut(s) 128, 144, 343, 460
HpyCH4III ACNGT 4 cut(s) 671, 713, 725, 835
HpyCH4V TGCA 6 cut(s) 259, 593, 637, 700, 718, 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 518
HpyF3I CTNAG 2 cut(s) 769, 956
Hsp92II CATG 4 cut(s) 41, 94, 623, 637
HspAI GCGC 1 cut(s) 659
Kzo9I GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
LmnI GCTCC 2 cut(s) 288, 416
Lsp1109I GCAGC 4 cut(s) 243, 323, 605, 684
MaeI CTAG 4 cut(s) 308, 765, 840, 963
MaeIII GTNAC 6 cut(s) 58, 185, 688, 772, 835, 844
MalI GATC 8 cut(s) 87, 231, 275, 495, 536, 795, 906, 945
MbiI CCGCTC 1 cut(s) 955
MboI GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
MboII GAAGA 4 cut(s) 334, 460, 503, 837
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 2 cut(s) 493, 943
MhlI GDGCHC 1 cut(s) 421
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 732, 771
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 4 cut(s) 543, 651, 854, 930
MspI CCGG 1 cut(s) 779
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 265, 518
NdeII GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
NlaIII CATG 4 cut(s) 41, 94, 623, 637
NmuCI GTSAC 3 cut(s) 58, 772, 835
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 148
PagI TCATGA 1 cut(s) 619
PceI AGGCCT 1 cut(s) 961
PctI GAATGC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 80, 743
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 258, 313, 595, 699
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 421
PspPI GGNCC 1 cut(s) 438
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 2 cut(s) 493, 943
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
SacI GAGCTC 1 cut(s) 421
SaqAI TTAA 4 cut(s) 543, 651, 854, 930
SatI GCNGC 4 cut(s) 257, 312, 594, 698
Sau3AI GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
Sau96I GGNCC 1 cut(s) 438
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 421
SfcI CTRYAG 2 cut(s) 387, 813
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 1 cut(s) 438
SseBI AGGCCT 1 cut(s) 961
SsiI CCGC 2 cut(s) 436, 953
SspI AATATT 1 cut(s) 896
SspMI CTAG 4 cut(s) 308, 765, 840, 963
SstI GAGCTC 1 cut(s) 421
StuI AGGCCT 1 cut(s) 961
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 4 cut(s) 671, 713, 725, 835
TaqI TCGA 3 cut(s) 148, 375, 382
TaqII GACCGA 1 cut(s) 46
TfiI GAWTC 2 cut(s) 80, 743
Tru1I TTAA 4 cut(s) 543, 651, 854, 930
Tru9I TTAA 4 cut(s) 543, 651, 854, 930
TscAI CASTG 4 cut(s) 730, 753, 777, 840
TseFI GTSAC 3 cut(s) 58, 772, 835
TseI GCWGC 4 cut(s) 256, 311, 593, 697
Tsp45I GTSAC 3 cut(s) 58, 772, 835
TspDTI ATGAA 4 cut(s) 335, 448, 460, 575
TspRI CASTG 4 cut(s) 730, 753, 777, 840
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 438
VspI ATTAAT 1 cut(s) 930
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 4 cut(s) 308, 765, 840, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.