Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011478

Physical Location & Seq

Genomic Coordinates Forward (+)

7155949 .. 7158430

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1098400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATTTCGACCTCGAAAACCCACTTACAATTTCCCATGACTTCCAGCCTGAAACAATCACTTCCTTGTTTGCCATTGAATCTGATCACATGCCATCAGAGACTTACTTGCAAAGCCTGAAAGCCCGCAACTTTGACATCTCCATTCGAAGGGAAGCCATAGCTTCCATCTCACAGCTTTGTTGCAACTCTGATGACCTTTTACTGTACCTTGCTGTAAATTATCTCGATCGGTTCTTGTCCTGCCAAGGAGTGCTGCAACCAAAGCCATGGCTCATAAAGCTTCTTGCAATGTCCTGCATTTCTTTAGCTTCCAAGATGAAGAAATCAGAATTCTCTCTCCTTGATGTTCAGGGTGATGGAGGCATCATTTTCGACACACAAACGATTCAAAGGATGGAATTACTGATTTTGGGAGCTCTAAAATGGAGAATGCGTTCCATTACACCCTTCTCATTTATGTCATTTGTCATTTCTTTGTTCAAACTAGAAGACCCGCCATTGCTACATGCTCTCAAAGCTAGAGCCACCCAAATCATCTTCAAATCTCAAAAGGATGTTGAGCTTTTGGTGTTCAAGCCATCAATAATTGCTGCCTCTGCTGTCCTCTCTGCTTCTGACGAGTTACTCCCTATGCAATTCCCCTGCTTTAAAAAAGCACTATCCAACTGTTCATATGTAAATAAGGAAAACATGTTGCAATGCTATAGTGCAATGCAGGACATTGTGGTTGATGGGTTCGATTCAGTGCTAGAGAGGGTGTGCAGCTCGTTCGTCACACCAGCCAATGTGCTAGACCATACTTTTTCAAGCTCTGCAGAAAGTGGAAAAACCACAGTCACAAGCATTAGCACGTTGAGACTGGAGAGGGACTTGAAGAGGAGAAAAAATAGTGAATACTGTAAAGATCACAGGCTCCAGATTTCTCACGAGCATTTCCAAAGTCACAAGCGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

320

Amino Acids

36.17

Weight (kDa)

6.71

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	20 - 146	2.3e-16	Cyclin, N-terminal domain
Cyclin_C	PF02984	149 - 243	7.2e-09	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03270 AT4G03270
fragaria_vesca	FvH4_6g44360
malus_domestica	MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica	Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis	pycom09g02220 pycom17g08390
rosa_chinensis	RchiOBHm_Chr2g0161291
rosa_laevigata	RLG00000021276
rosa_multiflora	Rmu_ssc0000196.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088940
rosa_rugosa	Rorug02G0488000 Rorug02G0488100
rosa_samantha	Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana	Rw2G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	127, 497
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	209
AfeI	AGCGCT	1 cut(s)	953
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	7 cut(s)	80, 392, 484, 544, 577, 810, 877
AloI	GAACNNNNNNTCC	2 cut(s)	421, 453
AluBI	AGCT	9 cut(s)	164, 178, 283, 311, 419, 521, 565, 768, 813
AluI	AGCT	9 cut(s)	164, 178, 283, 311, 419, 521, 565, 768, 813
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	2 cut(s)	95, 853
Aor51HI	AGCGCT	1 cut(s)	953
ApeKI	GCWGC	4 cut(s)	256, 593, 765, 954
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	954
AsuHPI	GGTGA	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	929
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	4 cut(s)	243, 580, 777, 941
BccI	CCATC	6 cut(s)	103, 176, 353, 391, 589, 728
BcgI	CGANNNNNNTGC	4 cut(s)	355, 389, 754, 788
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	95, 853
BfaI	CTAG	4 cut(s)	488, 522, 752, 794
BfmI	CTRYAG	2 cut(s)	706, 816
BfoI	RGCGCY	1 cut(s)	955
BisI	GCNGC	4 cut(s)	257, 594, 766, 955
BlsI	GCNGC	4 cut(s)	258, 595, 767, 956
BmiI	GGNNCC	1 cut(s)	917
BmsI	GCATC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	2 cut(s)	884, 902
Bpu14I	TTCGAA	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	247, 269
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	867
Bse3DI	GCAATG	4 cut(s)	297, 500, 707, 720
BseDI	CCNNGG	2 cut(s)	247, 269
BseGI	GGATG	2 cut(s)	402, 562
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	4 cut(s)	297, 500, 707, 720
BseNI	ACTGG	1 cut(s)	867
BseRI	GAGGAG	1 cut(s)	895
BseXI	GCAGC	4 cut(s)	243, 580, 777, 941
BsgI	GTGCAG	1 cut(s)	784
Bsh1285I	CGRYCG	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	2 cut(s)	95, 853
BsmFI	GGGAC	1 cut(s)	884
BsmI	GAATGC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	85, 229, 907
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	2 cut(s)	127, 497
BspLI	GGNNCC	1 cut(s)	917
BspMAI	CTGCAG	1 cut(s)	820
BspT104I	TTCGAA	1 cut(s)	148
BsrDI	GCAATG	4 cut(s)	297, 500, 707, 720
BsrI	ACTGG	1 cut(s)	867
BssECI	CCNNGG	2 cut(s)	247, 269
BssMI	GATC	3 cut(s)	85, 229, 907
BssSI	CACGAG	1 cut(s)	929
BssT1I	CCWWGG	2 cut(s)	247, 269
Bst2BI	CACGAG	1 cut(s)	929
Bst4CI	ACNGT	4 cut(s)	207, 671, 838, 902
Bst6I	CTCTTC	1 cut(s)	872
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	402, 562
BstH2I	RGCGCY	1 cut(s)	955
BstHHI	GCGC	1 cut(s)	954
BstKTI	GATC	3 cut(s)	88, 232, 910
BstMAI	GTCTC	2 cut(s)	95, 853
BstMBI	GATC	3 cut(s)	85, 229, 907
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 280, 518, 599
BstNSI	RCATGY	3 cut(s)	94, 512, 697
BstSFI	CTRYAG	2 cut(s)	706, 816
BstV1I	GCAGC	4 cut(s)	243, 580, 777, 941
BstV2I	GAAGAC	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	402, 562
BtsIMutI	CAGTG	1 cut(s)	753
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	954
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	5 cut(s)	38, 91, 270, 509, 694
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	3 cut(s)	87, 231, 909
DpnII	GATC	3 cut(s)	85, 229, 907
DraI	TTTAAA	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	872
EarI	CTCTTC	1 cut(s)	872
Ecl136II	GAGCTC	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	247, 269
Eco24I	GRGCYC	1 cut(s)	421
Eco47III	AGCGCT	1 cut(s)	953
Eco53kI	GAGCTC	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	332
EcoT14I	CCWWGG	2 cut(s)	247, 269
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	2 cut(s)	247, 269
FaeI	CATG	5 cut(s)	41, 94, 273, 512, 697
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	5 cut(s)	37, 90, 269, 508, 693
FauI	CCCGC	2 cut(s)	134, 504
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	257, 594, 766, 955
FokI	GGATG	2 cut(s)	409, 569
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	4 cut(s)	257, 594, 766, 955
FspBI	CTAG	4 cut(s)	488, 522, 752, 794
GlaI	GCGC	1 cut(s)	953
GluI	GCNGC	4 cut(s)	257, 594, 766, 955
GsuI	CTGGAG	2 cut(s)	884, 902
HaeII	RGCGCY	1 cut(s)	955
HhaI	GCGC	1 cut(s)	954
Hin1II	CATG	5 cut(s)	41, 94, 273, 512, 697
Hin6I	GCGC	1 cut(s)	952
HinP1I	GCGC	1 cut(s)	952
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	3 cut(s)	80, 388, 743
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	5 cut(s)	85, 100, 193, 331, 619
Hpy188III	TCNNGA	3 cut(s)	227, 919, 929
HpyAV	CCTTC	2 cut(s)	144, 460
HpyCH4III	ACNGT	4 cut(s)	207, 671, 838, 902
HpyCH4IV	ACGT	1 cut(s)	854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 280, 518, 599
HpySE526I	ACGT	1 cut(s)	854
Hsp92II	CATG	5 cut(s)	41, 94, 273, 512, 697
HspAI	GCGC	1 cut(s)	952
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	85, 229, 907
LmnI	GCTCC	2 cut(s)	416, 921
Lsp1109I	GCAGC	4 cut(s)	243, 580, 777, 941
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	4 cut(s)	488, 522, 752, 794
MaeII	ACGT	1 cut(s)	854
MaeIII	GTNAC	4 cut(s)	624, 775, 838, 944
MalI	GATC	3 cut(s)	87, 231, 909
MboI	GATC	3 cut(s)	85, 229, 907
MboII	GAAGA	4 cut(s)	334, 503, 532, 889
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	6 cut(s)	30, 220, 332, 401, 588, 638
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	7 cut(s)	23, 356, 607, 617, 750, 861, 873
MroXI	GAANNNNTTC	1 cut(s)	436
MseI	TTAA	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	438
MwoI	GCNNNNNNNGC	4 cut(s)	265, 280, 518, 599
NcoI	CCATGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	3 cut(s)	85, 229, 907
NlaIII	CATG	5 cut(s)	41, 94, 273, 512, 697
NlaIV	GGNNCC	1 cut(s)	917
NmuCI	GTSAC	3 cut(s)	775, 838, 944
NspI	RCATGY	3 cut(s)	94, 512, 697
NspV	TTCGAA	1 cut(s)	148
PciI	ACATGT	1 cut(s)	693
PctI	GAATGC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	3 cut(s)	80, 388, 743
PkrI	GCNGC	4 cut(s)	258, 595, 767, 956
Ple19I	CGATCG	1 cut(s)	232
PscI	ACATGT	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	917
PstI	CTGCAG	1 cut(s)	820
PvuI	CGATCG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	4 cut(s)	257, 594, 766, 955
Sau3AI	GATC	3 cut(s)	85, 229, 907
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	2 cut(s)	706, 816
SfuI	TTCGAA	1 cut(s)	148
Sse9I	AATT	6 cut(s)	30, 220, 332, 401, 588, 638
SsiI	CCGC	2 cut(s)	127, 497
SspMI	CTAG	4 cut(s)	488, 522, 752, 794
SstI	GAGCTC	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	247, 269
TaaI	ACNGT	4 cut(s)	207, 671, 838, 902
TaiI	ACGT	1 cut(s)	857
TaqI	TCGA	6 cut(s)	9, 15, 148, 228, 375, 741
TasI	AATT	6 cut(s)	30, 220, 332, 401, 588, 638
TfiI	GAWTC	3 cut(s)	80, 388, 743
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	3 cut(s)	775, 838, 944
TseI	GCWGC	4 cut(s)	256, 593, 765, 954
Tsp45I	GTSAC	3 cut(s)	775, 838, 944
TspDTI	ATGAA	2 cut(s)	335, 663
TspRI	CASTG	1 cut(s)	753
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	3 cut(s)	94, 512, 697
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	4 cut(s)	488, 522, 752, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.