Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011478

Physical Location & Seq

Genomic Coordinates Forward (+)

1680445 .. 1682235

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02220.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATTTCGACCTCGAAAACCCACTTACAATTTCCCATGACTTCCAGCCTGAAACAATCACTTCCTTGTTTGCCATTGAATCTGATCACATGCCATCAGAGACTTACTTGCAAAGCCTGAAAGCCCGCAACTTCGACATCTCCATTCGAAGGGAAGCCATAGCTTCCATCTCACAGCTTTGTTGCAACTCTGATGACCTTTTACTGTACCTTGCTGTAAATTATCTCGATCGGTTCTTGTCCTGCCAAGGAGTGCTGCAACCAAAGCCATGGCTCATAAAGCTTCTTGCAGTCTCCTGCATTTCTTTAGCTTCCAAGATGAGGAAATCAGAATTCTCTCTCCTTGATGTTCAGGGTGATGGAGGCATCATATTCGACATACAAACGATTCAAAGGATGGAATTATTGATTTTGGGAGCTCTAAAATGGAGAATGCGTTCCATTACACCCTTCTCATTTATGTCATATGTCATTTCTTTGTTCAAACTAGAAGACCCGCCATTGCTGCATGCTCTCAAAGCTAGAGCCACCCAAATCATCTTCAAATCTCAAAAGGATGTTGAGCTTTTGGTGTTCAAGCCATCAATAATTGCTGCCTCTGCTGTCCTCTCTGCTTCTGACGCGTTACTCCCTATGCAATTCCCCTGCTTTAAAAAAGCACTATCCAACTGTTCATATGTAAATAAGGAAAACATGTTGCAATGCTATCGTGCAATGCAGGACATTGTGGTTGATGGGTTCGATTCAGTGCTAGAGAGGGTGTGCAGCTCGTTCGTCACACCAGCCAATGTGCTAGACCATACTTTTTCAAGCTCTGCAGAAAGTGGAAAAACCAGTCACAAGCATTGCCACGTTGAGACTGGAGAGGGACTTGAAGAGGAGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

297

Amino Acids

33.25

Weight (kDa)

5.68

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03270 AT4G03270
fragaria_vesca	FvH4_6g44360
malus_domestica	MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica	Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis	pycom09g02220 pycom17g08390
rosa_chinensis	RchiOBHm_Chr2g0161291
rosa_laevigata	RLG00000021276
rosa_multiflora	Rmu_ssc0000196.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088940
rosa_rugosa	Rorug02G0488000 Rorug02G0488100
rosa_samantha	Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana	Rw2G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	623
AciI	CCGC	2 cut(s)	127, 497
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	150, 321
AflIII	ACRYGT	2 cut(s)	621, 693
AgsI	TTSAA	7 cut(s)	80, 392, 484, 544, 577, 810, 875
AloI	GAACNNNNNNTCC	2 cut(s)	421, 453
AluBI	AGCT	9 cut(s)	164, 178, 283, 311, 419, 521, 565, 768, 813
AluI	AGCT	9 cut(s)	164, 178, 283, 311, 419, 521, 565, 768, 813
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	3 cut(s)	95, 298, 851
ApeKI	GCWGC	4 cut(s)	256, 505, 593, 765
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	4 cut(s)	243, 492, 580, 777
BccI	CCATC	6 cut(s)	103, 176, 353, 391, 589, 728
BcgI	CGANNNNNNTGC	6 cut(s)	355, 389, 689, 723, 754, 788
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	3 cut(s)	95, 298, 851
BfaI	CTAG	4 cut(s)	488, 522, 752, 794
BfmI	CTRYAG	1 cut(s)	816
BisI	GCNGC	4 cut(s)	257, 506, 594, 766
BlsI	GCNGC	4 cut(s)	258, 507, 595, 767
BmsI	GCATC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	882
Bpu14I	TTCGAA	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	247, 269
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 321
Bse1I	ACTGG	2 cut(s)	834, 865
Bse3DI	GCAATG	4 cut(s)	500, 707, 720, 844
BseDI	CCNNGG	2 cut(s)	247, 269
BseGI	GGATG	2 cut(s)	402, 562
BseLI	CCNNNNNNNGG	2 cut(s)	150, 321
BseMI	GCAATG	4 cut(s)	500, 707, 720, 844
BseNI	ACTGG	2 cut(s)	834, 865
BseXI	GCAGC	4 cut(s)	243, 492, 580, 777
BsgI	GTGCAG	1 cut(s)	784
Bsh1236I	CGCG	1 cut(s)	623
Bsh1285I	CGRYCG	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	2 cut(s)	150, 321
BsmAI	GTCTC	3 cut(s)	95, 298, 851
BsmFI	GGGAC	1 cut(s)	882
BsmI	GAATGC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	85, 229
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	2 cut(s)	127, 497
BspFNI	CGCG	1 cut(s)	623
BspMAI	CTGCAG	1 cut(s)	820
BspT104I	TTCGAA	1 cut(s)	148
BsrDI	GCAATG	4 cut(s)	500, 707, 720, 844
BsrI	ACTGG	2 cut(s)	834, 865
BssECI	CCNNGG	2 cut(s)	247, 269
BssMI	GATC	2 cut(s)	85, 229
BssT1I	CCWWGG	2 cut(s)	247, 269
Bst4CI	ACNGT	2 cut(s)	207, 671
Bst6I	CTCTTC	1 cut(s)	870
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	127, 510
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	402, 562
BstFNI	CGCG	1 cut(s)	623
BstKTI	GATC	2 cut(s)	88, 232
BstMAI	GTCTC	3 cut(s)	95, 298, 851
BstMBI	GATC	2 cut(s)	85, 229
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	6 cut(s)	265, 280, 505, 518, 599, 620
BstNSI	RCATGY	3 cut(s)	94, 512, 697
BstSFI	CTRYAG	1 cut(s)	816
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	4 cut(s)	243, 492, 580, 777
BstV2I	GAAGAC	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	402, 562
BtsIMutI	CAGTG	1 cut(s)	753
Cac8I	GCNNGC	2 cut(s)	127, 510
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	5 cut(s)	38, 91, 270, 509, 694
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	2 cut(s)	87, 231
DpnII	GATC	2 cut(s)	85, 229
DraI	TTTAAA	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	247, 269
Eco24I	GRGCYC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	332
EcoT14I	CCWWGG	2 cut(s)	247, 269
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	2 cut(s)	247, 269
FaeI	CATG	5 cut(s)	41, 94, 273, 512, 697
FaqI	GGGAC	1 cut(s)	882
FatI	CATG	5 cut(s)	37, 90, 269, 508, 693
FauI	CCCGC	2 cut(s)	134, 504
FauNDI	CATATG	2 cut(s)	466, 676
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	257, 506, 594, 766
FokI	GGATG	2 cut(s)	409, 569
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	4 cut(s)	257, 506, 594, 766
FspBI	CTAG	4 cut(s)	488, 522, 752, 794
GluI	GCNGC	4 cut(s)	257, 506, 594, 766
GsuI	CTGGAG	1 cut(s)	882
HgaI	GACGC	1 cut(s)	629
Hin1II	CATG	5 cut(s)	41, 94, 273, 512, 697
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	3 cut(s)	80, 388, 743
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	5 cut(s)	85, 100, 193, 331, 619
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	144, 460
HpyCH4III	ACNGT	2 cut(s)	207, 671
HpyCH4IV	ACGT	1 cut(s)	852
HpyF10VI	GCNNNNNNNGC	6 cut(s)	265, 280, 505, 518, 599, 620
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	5 cut(s)	41, 94, 273, 512, 697
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	85, 229
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	4 cut(s)	243, 492, 580, 777
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	4 cut(s)	488, 522, 752, 794
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	3 cut(s)	624, 775, 836
MalI	GATC	2 cut(s)	87, 231
MboI	GATC	2 cut(s)	85, 229
MboII	GAAGA	3 cut(s)	503, 532, 887
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	6 cut(s)	30, 220, 332, 401, 588, 638
MluI	ACGCGT	1 cut(s)	621
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	8 cut(s)	23, 315, 356, 607, 617, 750, 859, 871
MroXI	GAANNNNTTC	1 cut(s)	436
MseI	TTAA	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	438
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	6 cut(s)	265, 280, 505, 518, 599, 620
NcoI	CCATGG	1 cut(s)	269
NdeI	CATATG	2 cut(s)	466, 676
NdeII	GATC	2 cut(s)	85, 229
NlaIII	CATG	5 cut(s)	41, 94, 273, 512, 697
NmuCI	GTSAC	2 cut(s)	775, 836
NspI	RCATGY	3 cut(s)	94, 512, 697
NspV	TTCGAA	1 cut(s)	148
PaeI	GCATGC	1 cut(s)	512
PciI	ACATGT	1 cut(s)	693
PctI	GAATGC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	3 cut(s)	80, 388, 743
PkrI	GCNGC	4 cut(s)	258, 507, 595, 767
Ple19I	CGATCG	1 cut(s)	232
PscI	ACATGT	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	820
PvuI	CGATCG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	4 cut(s)	257, 506, 594, 766
Sau3AI	GATC	2 cut(s)	85, 229
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	816
SfuI	TTCGAA	1 cut(s)	148
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	6 cut(s)	30, 220, 332, 401, 588, 638
SsiI	CCGC	2 cut(s)	127, 497
SspMI	CTAG	4 cut(s)	488, 522, 752, 794
SstI	GAGCTC	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	247, 269
TaaI	ACNGT	2 cut(s)	207, 671
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	7 cut(s)	9, 15, 135, 148, 228, 375, 741
TasI	AATT	6 cut(s)	30, 220, 332, 401, 588, 638
TfiI	GAWTC	3 cut(s)	80, 388, 743
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	2 cut(s)	775, 836
TseI	GCWGC	4 cut(s)	256, 505, 593, 765
Tsp45I	GTSAC	2 cut(s)	775, 836
TspDTI	ATGAA	1 cut(s)	663
TspRI	CASTG	1 cut(s)	753
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	3 cut(s)	94, 512, 697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	4 cut(s)	488, 522, 752, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.