RchiOBHm_Chr2g0161291

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011478
Physical Location & Seq
Reverse (-)
77235436 .. 77237860
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52965

Sequence Viewer

Length: 969 bp
ATGGAGTTCGACCTTGAAAACCCACTAACAATTTCCCATGATATCCACTCTGACTCGGTCACTTCTCTGTTCTCCATTGAATCCGATCACATGCCATCTGAGAATTACTTCCAAACCCTTCAAGCTGGAGACTTTGACATCTCTGTTCGAAGGGAAGCCATGGCTTCAATCTCACAGCTTTGTTGTAACTCTGATAACTTCTTATCCTACCTTGCTGTCAATTATCTTGATCGGTTCTTGTCCTGCCAAGGAAAGCTGCAACCGAAGCCTTGGATCATCAAGCTCCTTGCAATCTCCTGCGTTTCTTTAGCTGCCAAGATGAAGAAAACAGATTTTTCTCTTCTTGATTTTCAGAGTGACGGAGGTATCATTTTTGATACTCGAACGATAGAGAGAACGGAGTTCCTGATTTTGGGAGCTCTAAAATGGAGAATGCGGTCCATAACTCCCTTCTCTTTCATTCTCTTCTTCATTTCTTTGTTCAAGCTTGAAGATCCTCCGTTGAGGCAAGCTCTCAAAGCCAGAGCTACCCAGATCATCCTCAAAGCTCAAAATGATATGAAGCTTTTTGTGTTCAAGCCATCAATAATTGCAGCCTCTGCTCTCCTCTCTGCTTCTCATGAGTTATTCCCAATGCAATGTCCCTGCTTTAAAAAAGCACTATCCAACTGTTCCTATGTAAACAAGATAACTTTGCTGCAATGCTACAATTGTATGCAAGACAGTGTGGTAGATGAGTACGATTCAGTCTTGGAGATGGTGTCTAGCTCAGTGACACCGGCCAATGTGTTGGATCATACTTTTTCATGCTCTGCAGACAGTGGAAGAACCACAGTGACCAGCATTACCACTTTAAAATTGGAGAGGGACATCAAGAGGAGGAAATTTAGTGAATATTGTAAAGATCATCACCACAGAGTTGTCCAAATTAATTTCTCATCAGATCCAGCAACACTCGGGCCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

322

Amino Acids

36.4

Weight (kDa)

6.45

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 20 - 146 5.3e-15 Cyclin, N-terminal domain
Cyclin_C PF02984 148 - 245 3.2e-08 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03270 AT4G03270
fragaria_vesca FvH4_6g44360
malus_domestica MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis pycom09g02220 pycom17g08390
rosa_chinensis RchiOBHm_Chr2g0161291
rosa_laevigata RLG00000021276
rosa_multiflora Rmu_ssc0000196.1_g000006
rosa_roxburghii Rroxscaffold_2G00088940
rosa_rugosa Rorug02G0488000 Rorug02G0488100
rosa_samantha Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana Rw2G045890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 436
AclWI GGATC 4 cut(s) 281, 488, 801, 938
AcoI YGGCCR 1 cut(s) 780
AcsI RAATTY 1 cut(s) 884
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 7 cut(s) 17, 80, 122, 168, 484, 491, 577
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 4 cut(s) 281, 488, 801, 938
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 956
AoxI GGCC 2 cut(s) 780, 959
ApeKI GCWGC 4 cut(s) 256, 311, 593, 697
ApoI RAATTY 1 cut(s) 884
AseI ATTAAT 1 cut(s) 930
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 438, 959
AsuHPI GGTGA 1 cut(s) 902
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 956
AvaII GGWCC 1 cut(s) 438
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BanII GRGCYC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 4 cut(s) 243, 298, 605, 684
BccI CCATC 3 cut(s) 103, 589, 751
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 2 cut(s) 765, 963
BfmI CTRYAG 1 cut(s) 813
BisI GCNGC 4 cut(s) 257, 312, 594, 698
BlsI GCNGC 4 cut(s) 258, 313, 595, 699
Bme18I GGWCC 1 cut(s) 438
BmeT110I CYCGRG 1 cut(s) 956
BmgT120I GGNCC 2 cut(s) 438, 959
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpmI CTGGAG 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 159, 247, 269
BsaXI ACNNNNNCTCC 2 cut(s) 746, 776
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 778
Bse3DI GCAATG 2 cut(s) 644, 707
BseDI CCNNGG 3 cut(s) 159, 247, 269
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 2 cut(s) 644, 707
BseMII CTCAG 2 cut(s) 90, 783
BseRI GAGGAG 2 cut(s) 596, 892
BseXI GCAGC 4 cut(s) 243, 298, 605, 684
BshFI GGCC 2 cut(s) 782, 961
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 956
BsiSI CCGG 1 cut(s) 779
BslFI GGGAC 2 cut(s) 627, 881
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 123
BsmFI GGGAC 2 cut(s) 627, 881
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 2 cut(s) 782, 961
BsoBI CYCGRG 1 cut(s) 956
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 1 cut(s) 436
BspANI GGCC 2 cut(s) 782, 961
BspCNI CTCAG 2 cut(s) 91, 782
BspHI TCATGA 1 cut(s) 619
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 4 cut(s) 281, 488, 801, 938
BspT104I TTCGAA 1 cut(s) 148
BsrDI GCAATG 2 cut(s) 644, 707
BsrFI RCCGGY 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 3 cut(s) 159, 247, 269
BssMI GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
BssT1I CCWWGG 3 cut(s) 159, 247, 269
Bst4CI ACNGT 4 cut(s) 671, 725, 821, 835
Bst6I CTCTTC 2 cut(s) 345, 470
BstAPI GCANNNNNTGC 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 99, 769
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 537
BstKTI GATC 8 cut(s) 88, 232, 276, 496, 537, 796, 907, 946
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
BstMWI GCNNNNNNNGC 3 cut(s) 265, 518, 599
BstNSI RCATGY 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 813
BstV1I GCAGC 4 cut(s) 243, 298, 605, 684
BstX2I RGATCY 2 cut(s) 493, 943
BstXI CCANNNNNNTGG 1 cut(s) 790
BstYI RGATCY 2 cut(s) 493, 943
BsuRI GGCC 2 cut(s) 782, 961
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 537
BtsIMutI CAGTG 4 cut(s) 730, 777, 826, 840
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 2 cut(s) 438, 959
Csp6I GTAC 1 cut(s) 739
CviAII CATG 5 cut(s) 38, 91, 160, 620, 807
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 2 cut(s) 99, 769
DpnI GATC 8 cut(s) 87, 231, 275, 495, 536, 795, 906, 945
DpnII GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
DraI TTTAAA 2 cut(s) 652, 855
EaeI YGGCCR 1 cut(s) 780
Eam1104I CTCTTC 2 cut(s) 345, 470
EarI CTCTTC 2 cut(s) 345, 470
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 3 cut(s) 159, 247, 269
Eco24I GRGCYC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 956
EcoICRI GAGCTC 1 cut(s) 419
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 3 cut(s) 159, 247, 269
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 3 cut(s) 159, 247, 269
FaeI CATG 5 cut(s) 41, 94, 163, 623, 810
FaqI GGGAC 2 cut(s) 627, 881
FatI CATG 5 cut(s) 37, 90, 159, 619, 806
Fnu4HI GCNGC 4 cut(s) 257, 312, 594, 698
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 257, 312, 594, 698
FspBI CTAG 2 cut(s) 765, 963
GluI GCNGC 4 cut(s) 257, 312, 594, 698
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 2 cut(s) 782, 961
HapII CCGG 1 cut(s) 779
Hin1II CATG 5 cut(s) 41, 94, 163, 623, 810
HindIII AAGCTT 2 cut(s) 485, 563
HinfI GANTC 3 cut(s) 53, 80, 743
HpaII CCGG 1 cut(s) 779
HphI GGTGA 1 cut(s) 902
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 6 cut(s) 52, 85, 100, 193, 354, 943
Hpy188III TCNNGA 5 cut(s) 227, 344, 406, 620, 874
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 3 cut(s) 128, 144, 460
HpyCH4III ACNGT 4 cut(s) 671, 725, 821, 835
HpyCH4V TGCA 7 cut(s) 259, 290, 593, 637, 700, 718, 815
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 518, 599
HpyF3I CTNAG 2 cut(s) 99, 769
Hsp92II CATG 5 cut(s) 41, 94, 163, 623, 810
Kzo9I GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
LmnI GCTCC 2 cut(s) 288, 416
Lsp1109I GCAGC 4 cut(s) 243, 298, 605, 684
MaeI CTAG 2 cut(s) 765, 963
MaeIII GTNAC 5 cut(s) 58, 185, 356, 772, 835
MalI GATC 8 cut(s) 87, 231, 275, 495, 536, 795, 906, 945
MboI GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
MboII GAAGA 6 cut(s) 332, 334, 457, 460, 503, 837
MfeI CAATTG 1 cut(s) 709
MflI RGATCY 2 cut(s) 493, 943
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 9 cut(s) 30, 103, 220, 588, 709, 857, 884, 927, 931
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 690, 771
MnlI CCTC 9 cut(s) 356, 498, 507, 551, 607, 617, 858, 870, 873
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 3 cut(s) 651, 854, 930
MspI CCGG 1 cut(s) 779
MunI CAATTG 1 cut(s) 709
Mva1269I GAATGC 1 cut(s) 438
MwoI GCNNNNNNNGC 3 cut(s) 265, 518, 599
NcoI CCATGG 1 cut(s) 159
NdeII GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
NlaIII CATG 5 cut(s) 41, 94, 163, 623, 810
NmuCI GTSAC 4 cut(s) 58, 356, 772, 835
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 148
PagI TCATGA 1 cut(s) 619
PctI GAATGC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 80, 743
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 258, 313, 595, 699
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 421
PspPI GGNCC 2 cut(s) 438, 959
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 2 cut(s) 493, 943
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
SacI GAGCTC 1 cut(s) 421
SaqAI TTAA 3 cut(s) 651, 854, 930
SatI GCNGC 4 cut(s) 257, 312, 594, 698
Sau3AI GATC 8 cut(s) 85, 229, 273, 493, 534, 793, 904, 943
Sau96I GGNCC 2 cut(s) 438, 959
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 421
SfcI CTRYAG 1 cut(s) 813
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 1 cut(s) 438
Sse9I AATT 9 cut(s) 30, 103, 220, 588, 709, 857, 884, 927, 931
SsiI CCGC 1 cut(s) 436
SspI AATATT 1 cut(s) 896
SspMI CTAG 2 cut(s) 765, 963
SstI GAGCTC 1 cut(s) 421
StyI CCWWGG 3 cut(s) 159, 247, 269
TaaI ACNGT 4 cut(s) 671, 725, 821, 835
TaqI TCGA 3 cut(s) 9, 148, 382
TaqII GACCGA 1 cut(s) 46
TasI AATT 9 cut(s) 30, 103, 220, 588, 709, 857, 884, 927, 931
TfiI GAWTC 2 cut(s) 80, 743
Tru1I TTAA 3 cut(s) 651, 854, 930
Tru9I TTAA 3 cut(s) 651, 854, 930
TscAI CASTG 4 cut(s) 730, 777, 826, 840
TseFI GTSAC 4 cut(s) 58, 356, 772, 835
TseI GCWGC 4 cut(s) 256, 311, 593, 697
Tsp45I GTSAC 4 cut(s) 58, 356, 772, 835
TspDTI ATGAA 5 cut(s) 335, 448, 460, 575, 795
TspGWI ACGGA 3 cut(s) 375, 413, 489
TspRI CASTG 4 cut(s) 730, 777, 826, 840
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 438
VspI ATTAAT 1 cut(s) 930
XapI RAATTY 1 cut(s) 884
XceI RCATGY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 2 cut(s) 765, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.