Rh2AG554600

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011478
Physical Location & Seq
Reverse (-)
78565347 .. 78568203
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG554600.1

Sequence Viewer

Length: 807 bp
ATGTTTTTGCTGCAGCTTTGTTGTAACTCTGATAACTTCTTATCCTACCTTGCTGTCAATTATCTTGATCGGTTCTTGTCCTGCCAAGGAAAACTGCAACCGAAGCCTTGGATCATCAAGCTCCTTGCAATCTCCTGCGTTTCTTTAGCTGCCAAGATGAAGAAAACAGATTTTTCTCTTCTTGATTTTCAGAATGACGGAGGTATCATTTTTGATACTCGAACGATAGAGAGAATGGAGTTCCTGATTTTGGGAGCTCTAAAATGGAGAATGCGGTCCATAACTCCCTTCTCTTTCATTCTCTTCTTCATTTCTTTGTTCAAGCTTGAAGATCCTCCGTTGAGGCAAGCTCTCAAAGCCAGAGCCACCCAGATCATCCTCAAAGCTCAAAATGATATGAAGCTTTTTGTGTTCAAGCCATCAATAATTGCAGCCTCTGCTCTCCTCTCTGCTTCTCATGAGTTATTCCCAATGCAATGTCCCTGCTTTAAAAAAGCACTATCCAACTGTTCCTATGTAAACAAGATAACTTTGCTGCAATGCTACAATTGTATGCAAGACAGTGTGGTAGATGAGTACGATTCAGTCTTGGAGATGGTGTCTAGCTCAGTGACACCGGCCAATGTGTTGGATCATACTTTTTCATGCTCTGCAGACAGTGGAAGAACCACAGTGACCAGCATTACCACTTTAAAATTGGAGAGCGACATCAAGAGGAGGAAATTTAGTGAATATTGTAAAGATCATCACCACAGAGTTGTCCAAATTAATTTCTCATCAGATCCAGCAACACTCAGGCCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

268

Amino Acids

30.45

Weight (kDa)

8.83

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 15 - 92 1.6e-13 Cyclin, N-terminal domain
Cyclin_C PF02984 94 - 191 2.4e-08 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03270 AT4G03270
fragaria_vesca FvH4_6g44360
malus_domestica MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis pycom09g02220 pycom17g08390
rosa_chinensis RchiOBHm_Chr2g0161291
rosa_laevigata RLG00000021276
rosa_multiflora Rmu_ssc0000196.1_g000006
rosa_roxburghii Rroxscaffold_2G00088940
rosa_rugosa Rorug02G0488000 Rorug02G0488100
rosa_samantha Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana Rw2G045890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 274
AclWI GGATC 4 cut(s) 119, 326, 639, 776
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 1 cut(s) 722
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 3 cut(s) 322, 329, 415
AluBI AGCT 9 cut(s) 16, 121, 149, 257, 325, 350, 386, 403, 606
AluI AGCT 9 cut(s) 16, 121, 149, 257, 325, 350, 386, 403, 606
Alw21I GWGCWC 1 cut(s) 259
AlwI GGATC 4 cut(s) 119, 326, 639, 776
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 2 cut(s) 618, 797
ApeKI GCWGC 5 cut(s) 10, 13, 149, 431, 535
ApoI RAATTY 1 cut(s) 722
AseI ATTAAT 1 cut(s) 768
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 740
AvaII GGWCC 1 cut(s) 276
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BanII GRGCYC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 4 cut(s) 25, 136, 443, 522
BccI CCATC 2 cut(s) 427, 589
BfaI CTAG 2 cut(s) 603, 801
BfmI CTRYAG 2 cut(s) 11, 651
BisI GCNGC 5 cut(s) 11, 14, 150, 432, 536
BlsI GCNGC 5 cut(s) 12, 15, 151, 433, 537
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BsaJI CCNNGG 2 cut(s) 85, 107
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse118I RCCGGY 1 cut(s) 616
Bse3DI GCAATG 2 cut(s) 482, 545
BseDI CCNNGG 2 cut(s) 85, 107
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 2 cut(s) 482, 545
BseMII CTCAG 1 cut(s) 621
BseRI GAGGAG 2 cut(s) 434, 730
BseXI GCAGC 4 cut(s) 25, 136, 443, 522
BshFI GGCC 2 cut(s) 620, 799
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 617
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 2 cut(s) 620, 799
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 7 cut(s) 67, 111, 331, 372, 631, 742, 781
BspACI CCGC 1 cut(s) 274
BspANI GGCC 2 cut(s) 620, 799
BspCNI CTCAG 2 cut(s) 620, 807
BspHI TCATGA 1 cut(s) 457
BspMAI CTGCAG 2 cut(s) 15, 655
BspPI GGATC 4 cut(s) 119, 326, 639, 776
BsrDI GCAATG 2 cut(s) 482, 545
BsrFI RCCGGY 1 cut(s) 616
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 2 cut(s) 85, 107
BssMI GATC 7 cut(s) 67, 111, 331, 372, 631, 742, 781
BssT1I CCWWGG 2 cut(s) 85, 107
Bst4CI ACNGT 4 cut(s) 509, 563, 659, 673
Bst6I CTCTTC 2 cut(s) 183, 308
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 607, 794
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 7 cut(s) 70, 114, 334, 375, 634, 745, 784
BstMBI GATC 7 cut(s) 67, 111, 331, 372, 631, 742, 781
BstMWI GCNNNNNNNGC 3 cut(s) 103, 356, 437
BstSFI CTRYAG 2 cut(s) 11, 651
BstV1I GCAGC 4 cut(s) 25, 136, 443, 522
BstX2I RGATCY 2 cut(s) 331, 781
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 2 cut(s) 331, 781
BsuRI GGCC 2 cut(s) 620, 799
BtsCI GGATG 1 cut(s) 375
BtsIMutI CAGTG 4 cut(s) 568, 615, 664, 678
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 616
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 577
CviAII CATG 2 cut(s) 458, 645
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 2 cut(s) 607, 794
DpnI GATC 7 cut(s) 69, 113, 333, 374, 633, 744, 783
DpnII GATC 7 cut(s) 67, 111, 331, 372, 631, 742, 781
DraI TTTAAA 2 cut(s) 490, 693
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 183, 308
EarI CTCTTC 2 cut(s) 183, 308
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 85, 107
Eco147I AGGCCT 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 257
EcoT14I CCWWGG 2 cut(s) 85, 107
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 2 cut(s) 85, 107
FaeI CATG 2 cut(s) 461, 648
FaiI YATR 7 cut(s) 281, 398, 459, 516, 554, 636, 646
FaqI GGGAC 1 cut(s) 465
FatI CATG 2 cut(s) 457, 644
Fnu4HI GCNGC 5 cut(s) 11, 14, 150, 432, 536
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 5 cut(s) 11, 14, 150, 432, 536
FspBI CTAG 2 cut(s) 603, 801
GluI GCNGC 5 cut(s) 11, 14, 150, 432, 536
HaeIII GGCC 2 cut(s) 620, 799
HapII CCGG 1 cut(s) 617
Hin1II CATG 2 cut(s) 461, 648
HindIII AAGCTT 2 cut(s) 323, 401
HinfI GANTC 1 cut(s) 581
HpaII CCGG 1 cut(s) 617
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 3 cut(s) 31, 192, 781
Hpy188III TCNNGA 5 cut(s) 65, 182, 244, 458, 712
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 4 cut(s) 509, 563, 659, 673
HpyCH4V TGCA 8 cut(s) 13, 97, 128, 431, 475, 538, 556, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 356, 437
HpyF3I CTNAG 2 cut(s) 607, 794
Hsp92II CATG 2 cut(s) 461, 648
Kzo9I GATC 7 cut(s) 67, 111, 331, 372, 631, 742, 781
LmnI GCTCC 2 cut(s) 126, 254
Lsp1109I GCAGC 4 cut(s) 25, 136, 443, 522
MaeI CTAG 2 cut(s) 603, 801
MaeIII GTNAC 3 cut(s) 23, 610, 673
MalI GATC 7 cut(s) 69, 113, 333, 374, 633, 744, 783
MboI GATC 7 cut(s) 67, 111, 331, 372, 631, 742, 781
MboII GAAGA 6 cut(s) 170, 172, 295, 298, 341, 675
MfeI CAATTG 1 cut(s) 547
MflI RGATCY 2 cut(s) 331, 781
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 7 cut(s) 58, 426, 547, 695, 722, 765, 769
MmeI TCCRAC 2 cut(s) 528, 609
MnlI CCTC 8 cut(s) 194, 336, 345, 389, 445, 455, 708, 711
MseI TTAA 3 cut(s) 489, 692, 768
MspI CCGG 1 cut(s) 617
MunI CAATTG 1 cut(s) 547
Mva1269I GAATGC 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 103, 356, 437
NdeII GATC 7 cut(s) 67, 111, 331, 372, 631, 742, 781
NlaIII CATG 2 cut(s) 461, 648
NmuCI GTSAC 2 cut(s) 610, 673
PagI TCATGA 1 cut(s) 457
PceI AGGCCT 1 cut(s) 799
PctI GAATGC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 581
PkrI GCNGC 5 cut(s) 12, 15, 151, 433, 537
PshBI ATTAAT 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 276
PstI CTGCAG 2 cut(s) 15, 655
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 2 cut(s) 331, 781
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
SacI GAGCTC 1 cut(s) 259
SaqAI TTAA 3 cut(s) 489, 692, 768
SatI GCNGC 5 cut(s) 11, 14, 150, 432, 536
Sau3AI GATC 7 cut(s) 67, 111, 331, 372, 631, 742, 781
Sau96I GGNCC 1 cut(s) 276
SduI GDGCHC 1 cut(s) 259
SfcI CTRYAG 2 cut(s) 11, 651
SinI GGWCC 1 cut(s) 276
Sse9I AATT 7 cut(s) 58, 426, 547, 695, 722, 765, 769
SseBI AGGCCT 1 cut(s) 799
SsiI CCGC 1 cut(s) 274
SspI AATATT 1 cut(s) 734
SspMI CTAG 2 cut(s) 603, 801
SstI GAGCTC 1 cut(s) 259
StuI AGGCCT 1 cut(s) 799
StyI CCWWGG 2 cut(s) 85, 107
TaaI ACNGT 4 cut(s) 509, 563, 659, 673
TaqI TCGA 1 cut(s) 220
TasI AATT 7 cut(s) 58, 426, 547, 695, 722, 765, 769
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 3 cut(s) 489, 692, 768
Tru9I TTAA 3 cut(s) 489, 692, 768
TscAI CASTG 4 cut(s) 568, 615, 664, 678
TseFI GTSAC 2 cut(s) 610, 673
TseI GCWGC 5 cut(s) 10, 13, 149, 431, 535
Tsp45I GTSAC 2 cut(s) 610, 673
TspDTI ATGAA 5 cut(s) 173, 286, 298, 413, 633
TspGWI ACGGA 2 cut(s) 213, 327
TspRI CASTG 4 cut(s) 568, 615, 664, 678
VpaK11BI GGWCC 1 cut(s) 276
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 1 cut(s) 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 694
XspI CTAG 2 cut(s) 603, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.