Rorug02G0488000

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011478
Physical Location & Seq
Forward (+)
61791799 .. 61798742
6944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0488000.1

Sequence Viewer

Length: 1527 bp
ATGGGAAGATTTGTGGGTGAGAGTGTAGCCTCAAATTTAAATGAGGGAGAAAAGCATAGTAGTGATGGAAGAAGCTACAGATCAATCCTCCGACGGGTAACTGGTTATGCCAAACCAGGGCAGCTCTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCTACTCTTCTTGATGCTTTAGCAGGTAGATTGAGTTCAAGCATAAGGCAGACAGGGGATATCCGTATAAATGGACATAAACAAGCACTAGCTTATGGAACTTCGGCATATGTAACACAAGATGACACTCTAATGACCACATTAACGGTGAAAGAAGCTGTATACTACTCTGCTCAACTGCAGCTACCAGAGTCAATGTCTAAGTCAAAGAAGAAAGAGAGAGCACAAGTGATCATAAGAGAGATGGGTTTGCAAAATGCCATGAACACAAGGATCGGAGGTTGGGGAGCCAAGGGCCTCAGTGGTGGCGAAAAGAGAAGAGTTAGTATCTGCATTGAGCTTCTTACACAACCAAAACTTCTCTTTCTGGATGAACCAACAAGCGGACTTGACAGTGCTGCGTCTTTTTATGTGATGAGCAGAATTGCAAATCTTGGTCATAAATCGTCTCAGAGGACCATAGTTGCTTCCATCCATCAGCCTAGCTCTGAAGTCTTTCAACTCTTTGACAATCTTTGTCTTCTGTCTTCCGGCGAAACTGTATATTTTGGTCCTGCTTCTGCAGCGAATGAATTTTTCGCTGCAAGTGGTTTTCCATGTCCAACTCTCCTACACCCATCAGATCACTTCCTCAAGACCATAAACAATGATTTTGAGCTGGCACGAGGCTCTCTACTAGCATTTGTGGCTTCATTTCTAACTTTCATGGCCATTGGTGGGTTTCCTTCCTTTGTGGAAGACATGAAGGTATTTGAACGTGAAAGACTGAACGGGCACTATGGTGTTAGTGCATTTGTTTTCGCCAACACATTTTCTTCAATGCCTTTGTTAATGTTGATTTCACTGATTCCTGGCGCAACAACCTACTATCTTGCTGGACTTCACAGTGGATTTGAACACTTCTTCTACTTTGCTTCTGCTCTATTTGCTTGCATGATGCTGGTTGAGAGCCTAATGATGATAGTTGCGAGCATTGTACCGAATTTCCTAATGGGCATAATAGCTGGCTCTGGATTGCAAGGGATTATGTTGTTATGCGGCGGATTCTTCCGGCTACCAAATGATCTTCCGGATCTTGTGTGGAAATACCCATTGTACCATATTGCCTTCCACAAGTATGCATTCCAGGGAATGTTTAAGAATGAATTTGAAGGAACAACGTTTCCGAATGATGATCAACTTAGAATCGGTAACTCTAAGTGGCTTAGTGGCGACAGCATTTTGAGAGATATATGGCAGGTGGAAATGGGTTACTCTAAATGGGTTGATCTTGGTGTCTTGCTAGGAATGATAGTTCTGTATCGAGCCTTGTTCTTAGTTATCAATTTATCATCAAGATCACTGAGAAAAGGAAGAATATTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

508

Amino Acids

55.97

Weight (kDa)

8.85

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 31 - 181 5.9e-29 ABC transporter
ABC2_membrane_7 PF19055 212 - 267 1.2e-08 ABC-2 type transporter
ABC2_membrane PF01061 263 - 436 7.6e-31 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03270 AT4G03270
fragaria_vesca FvH4_6g44360
malus_domestica MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis pycom09g02220 pycom17g08390
rosa_chinensis RchiOBHm_Chr2g0161291
rosa_laevigata RLG00000021276
rosa_multiflora Rmu_ssc0000196.1_g000006
rosa_roxburghii Rroxscaffold_2G00088940
rosa_rugosa Rorug02G0488000 Rorug02G0488100
rosa_samantha Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana Rw2G045890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1387
Acc36I ACCTGC 2 cut(s) 173, 1387
AccI GTMKAC 1 cut(s) 321
AccIII TCCGGA 1 cut(s) 1228
AciI CCGC 3 cut(s) 543, 1197, 1200
AclI AACGTT 1 cut(s) 1319
AclWI GGATC 2 cut(s) 440, 1239
AcoI YGGCCR 1 cut(s) 867
AcsI RAATTY 4 cut(s) 34, 731, 1141, 1304
AcuI CTGAAG 1 cut(s) 669
AfaI GTAC 2 cut(s) 1137, 1256
AfiI CCNNNNNNNGG 4 cut(s) 94, 117, 542, 876
AgsI TTSAA 6 cut(s) 198, 659, 914, 978, 1055, 1310
AjnI CCWGG 3 cut(s) 115, 1009, 1284
AleI CACNNNNGTG 1 cut(s) 939
AloI GAACNNNNNNTCC 4 cut(s) 1306, 1338, 1437, 1469
AluBI AGCT 9 cut(s) 75, 124, 251, 317, 343, 499, 645, 817, 1163
AluI AGCT 9 cut(s) 75, 124, 251, 317, 343, 499, 645, 817, 1163
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 612
AlwI GGATC 2 cut(s) 440, 1239
Aor13HI TCCGGA 1 cut(s) 1228
AoxI GGCC 2 cut(s) 454, 867
ApeKI GCWGC 5 cut(s) 121, 340, 557, 722, 740
ApoI RAATTY 4 cut(s) 34, 731, 1141, 1304
Asp700I GAANNNNTTC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 1016
AspS9I GGNCC 4 cut(s) 140, 454, 615, 710
AsuHPI GGTGA 2 cut(s) 29, 319
AvaII GGWCC 3 cut(s) 140, 615, 710
BaeGI GKGCMC 1 cut(s) 936
BalI TGGCCA 1 cut(s) 869
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 3 cut(s) 671, 678, 903
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 5 cut(s) 133, 352, 544, 727, 734
BccI CCATC 5 cut(s) 59, 397, 638, 642, 784
BciT130I CCWGG 3 cut(s) 117, 1011, 1286
BclI TGATCA 2 cut(s) 390, 1333
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 4 cut(s) 248, 642, 836, 1442
BfmI CTRYAG 3 cut(s) 76, 338, 720
BfuAI ACCTGC 2 cut(s) 173, 1387
BisI GCNGC 6 cut(s) 122, 341, 558, 723, 741, 1198
BlsI GCNGC 6 cut(s) 123, 342, 559, 724, 742, 1199
Bme1390I CCNGG 3 cut(s) 117, 1011, 1286
Bme18I GGWCC 3 cut(s) 140, 615, 710
BmgT120I GGNCC 4 cut(s) 140, 454, 615, 710
BmiI GGNNCC 2 cut(s) 141, 448
BmrFI CCNGG 3 cut(s) 117, 1011, 1286
BmsI GCATC 2 cut(s) 163, 1086
BpiI GAAGAC 3 cut(s) 671, 678, 903
BpuEI CTTGAG 1 cut(s) 776
BsaJI CCNNGG 3 cut(s) 116, 450, 1285
BsaWI WCCGGW 1 cut(s) 1228
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 117, 542, 876
Bse1I ACTGG 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 1228
BseBI CCWGG 3 cut(s) 117, 1011, 1286
BseDI CCNNGG 3 cut(s) 116, 450, 1285
BseGI GGATG 2 cut(s) 535, 630
BseLI CCNNNNNNNGG 4 cut(s) 94, 117, 542, 876
BseMII CTCAG 3 cut(s) 472, 623, 1493
BseNI ACTGG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 936
BseXI GCAGC 5 cut(s) 133, 352, 544, 727, 734
BshFI GGCC 2 cut(s) 456, 869
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 3 cut(s) 690, 1210, 1229
BslI CCNNNNNNNGG 4 cut(s) 94, 117, 542, 876
BsmAI GTCTC 1 cut(s) 612
BsmBI CGTCTC 1 cut(s) 612
BsmI GAATGC 1 cut(s) 1280
BsnI GGCC 2 cut(s) 456, 869
Bsp1286I GDGCHC 2 cut(s) 385, 936
Bsp13I TCCGGA 1 cut(s) 1228
Bsp143I GATC 9 cut(s) 80, 390, 432, 781, 1222, 1231, 1333, 1426, 1496
BspACI CCGC 3 cut(s) 543, 1197, 1200
BspANI GGCC 2 cut(s) 456, 869
BspCNI CTCAG 3 cut(s) 471, 622, 1494
BspEI TCCGGA 1 cut(s) 1228
BspLI GGNNCC 2 cut(s) 141, 448
BspMAI CTGCAG 2 cut(s) 342, 724
BspMI ACCTGC 2 cut(s) 173, 1387
BspPI GGATC 2 cut(s) 440, 1239
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 116, 450, 1285
BssMI GATC 9 cut(s) 80, 390, 432, 781, 1222, 1231, 1333, 1426, 1496
BssNAI GTATAC 1 cut(s) 322
BssSI CACGAG 1 cut(s) 822
BssT1I CCWWGG 1 cut(s) 450
Bst1107I GTATAC 1 cut(s) 322
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 3 cut(s) 117, 1011, 1286
Bst4CI ACNGT 4 cut(s) 307, 554, 700, 1046
Bst6I CTCTTC 2 cut(s) 171, 472
BstC8I GCNNGC 4 cut(s) 819, 1090, 1129, 1165
BstDEI CTNAG 9 cut(s) 360, 458, 609, 1340, 1356, 1364, 1474, 1502, 1524
BstF5I GGATG 2 cut(s) 535, 630
BstHHI GCGC 1 cut(s) 1016
BstKTI GATC 9 cut(s) 83, 393, 435, 784, 1225, 1234, 1336, 1429, 1499
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 9 cut(s) 80, 390, 432, 781, 1222, 1231, 1333, 1426, 1496
BstMWI GCNNNNNNNGC 3 cut(s) 722, 845, 1085
BstNI CCWGG 3 cut(s) 117, 1011, 1286
BstSCI CCNGG 3 cut(s) 115, 1009, 1284
BstSFI CTRYAG 3 cut(s) 76, 338, 720
BstSLI GKGCMC 1 cut(s) 936
BstV1I GCAGC 5 cut(s) 133, 352, 544, 727, 734
BstV2I GAAGAC 3 cut(s) 671, 678, 903
BstX2I RGATCY 1 cut(s) 1231
BstYI RGATCY 1 cut(s) 1231
BstZ17I GTATAC 1 cut(s) 322
BsuRI GGCC 2 cut(s) 456, 869
BtsCI GGATG 2 cut(s) 535, 630
BtsIMutI CAGTG 5 cut(s) 466, 559, 1001, 1051, 1499
BveI ACCTGC 2 cut(s) 173, 1387
Cac8I GCNNGC 4 cut(s) 819, 1090, 1129, 1165
CfoI GCGC 1 cut(s) 1016
Cfr13I GGNCC 4 cut(s) 140, 454, 615, 710
CseI GACGC 1 cut(s) 549
Csp6I GTAC 2 cut(s) 1136, 1255
CviAII CATG 5 cut(s) 421, 756, 865, 901, 1093
CviQI GTAC 2 cut(s) 1136, 1255
DdeI CTNAG 9 cut(s) 360, 458, 609, 1340, 1356, 1364, 1474, 1502, 1524
DpnI GATC 9 cut(s) 82, 392, 434, 783, 1224, 1233, 1335, 1428, 1498
DpnII GATC 9 cut(s) 80, 390, 432, 781, 1222, 1231, 1333, 1426, 1496
DraI TTTAAA 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 867
Eam1104I CTCTTC 2 cut(s) 171, 472
EarI CTCTTC 2 cut(s) 171, 472
EciI GGCGGA 1 cut(s) 1215
Eco130I CCWWGG 1 cut(s) 450
Eco32I GATATC 1 cut(s) 220
Eco47I GGWCC 3 cut(s) 140, 615, 710
Eco57I CTGAAG 1 cut(s) 669
EcoO109I RGGNCCY 2 cut(s) 140, 454
EcoRII CCWGG 3 cut(s) 115, 1009, 1284
EcoRV GATATC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 450
EcoT22I ATGCAT 1 cut(s) 1282
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 5 cut(s) 424, 759, 868, 904, 1096
FatI CATG 5 cut(s) 420, 755, 864, 900, 1092
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 2 cut(s) 390, 1333
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 6 cut(s) 122, 341, 558, 723, 741, 1198
FokI GGATG 2 cut(s) 542, 617
Fsp4HI GCNGC 6 cut(s) 122, 341, 558, 723, 741, 1198
FspBI CTAG 4 cut(s) 248, 642, 836, 1442
GlaI GCGC 1 cut(s) 1015
GluI GCNGC 6 cut(s) 122, 341, 558, 723, 741, 1198
HaeIII GGCC 2 cut(s) 456, 869
HapII CCGG 3 cut(s) 690, 1210, 1229
HgaI GACGC 1 cut(s) 549
HhaI GCGC 1 cut(s) 1016
Hin1II CATG 5 cut(s) 424, 759, 868, 904, 1096
Hin6I GCGC 1 cut(s) 1014
HinP1I GCGC 1 cut(s) 1014
HinfI GANTC 4 cut(s) 350, 1006, 1203, 1344
HpaII CCGG 3 cut(s) 690, 1210, 1229
HphI GGTGA 2 cut(s) 29, 319
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 6 cut(s) 92, 437, 612, 649, 781, 1326
Hpy188III TCNNGA 6 cut(s) 170, 527, 793, 1170, 1229, 1494
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 96
HpyAV CCTTC 5 cut(s) 153, 894, 898, 1276, 1304
HpyCH4III ACNGT 4 cut(s) 307, 554, 700, 1046
HpyCH4IV ACGT 2 cut(s) 916, 1319
HpyF10VI GCNNNNNNNGC 3 cut(s) 722, 845, 1085
HpyF3I CTNAG 9 cut(s) 360, 458, 609, 1340, 1356, 1364, 1474, 1502, 1524
HpySE526I ACGT 2 cut(s) 916, 1319
Hsp92II CATG 5 cut(s) 424, 759, 868, 904, 1096
HspAI GCGC 1 cut(s) 1014
Kpn2I TCCGGA 1 cut(s) 1228
Ksp22I TGATCA 2 cut(s) 390, 1333
Kzo9I GATC 9 cut(s) 80, 390, 432, 781, 1222, 1231, 1333, 1426, 1496
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 5 cut(s) 133, 352, 544, 727, 734
LweI GCATC 2 cut(s) 163, 1086
MaeI CTAG 4 cut(s) 248, 642, 836, 1442
MaeII ACGT 2 cut(s) 916, 1319
MaeIII GTNAC 4 cut(s) 97, 271, 1349, 1409
MalI GATC 9 cut(s) 82, 392, 434, 783, 1224, 1233, 1335, 1428, 1498
MboI GATC 9 cut(s) 80, 390, 432, 781, 1222, 1231, 1333, 1426, 1496
MflI RGATCY 1 cut(s) 1231
MhlI GDGCHC 2 cut(s) 385, 936
MlsI TGGCCA 1 cut(s) 869
MluCI AATT 6 cut(s) 34, 582, 731, 1141, 1304, 1483
MluNI TGGCCA 1 cut(s) 869
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 115, 785
MnlI CCTC 8 cut(s) 37, 40, 98, 431, 467, 606, 800, 818
Mox20I TGGCCA 1 cut(s) 869
Mph1103I ATGCAT 1 cut(s) 1282
MroI TCCGGA 1 cut(s) 1228
MroXI GAANNNNTTC 1 cut(s) 654
MscI TGGCCA 1 cut(s) 869
MseI TTAA 4 cut(s) 38, 302, 989, 1296
MslI CAYNNNNRTG 4 cut(s) 60, 290, 939, 1275
Msp20I TGGCCA 1 cut(s) 869
MspI CCGG 3 cut(s) 690, 1210, 1229
MspR9I CCNGG 3 cut(s) 117, 1011, 1286
Mva1269I GAATGC 1 cut(s) 1280
MvaI CCWGG 3 cut(s) 117, 1011, 1286
MwoI GCNNNNNNNGC 3 cut(s) 722, 845, 1085
NdeI CATATG 1 cut(s) 268
NdeII GATC 9 cut(s) 80, 390, 432, 781, 1222, 1231, 1333, 1426, 1496
NlaIII CATG 5 cut(s) 424, 759, 868, 904, 1096
NlaIV GGNNCC 2 cut(s) 141, 448
NsiI ATGCAT 1 cut(s) 1282
OliI CACNNNNGTG 1 cut(s) 939
PaqCI CACCTGC 1 cut(s) 1387
PctI GAATGC 1 cut(s) 1280
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 3 cut(s) 1006, 1203, 1344
PkrI GCNGC 6 cut(s) 123, 342, 559, 724, 742, 1199
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PpuMI RGGWCCY 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 1319
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 115, 1009, 1284
PspGI CCWGG 3 cut(s) 115, 1009, 1284
PspN4I GGNNCC 2 cut(s) 141, 448
PspPI GGNCC 4 cut(s) 140, 454, 615, 710
PspPPI RGGWCCY 1 cut(s) 140
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
PstI CTGCAG 2 cut(s) 342, 724
PsuI RGATCY 1 cut(s) 1231
RsaI GTAC 2 cut(s) 1137, 1256
RsaNI GTAC 2 cut(s) 1136, 1255
RseI CAYNNNNRTG 4 cut(s) 60, 290, 939, 1275
SaqAI TTAA 4 cut(s) 38, 302, 989, 1296
SatI GCNGC 6 cut(s) 122, 341, 558, 723, 741, 1198
Sau3AI GATC 9 cut(s) 80, 390, 432, 781, 1222, 1231, 1333, 1426, 1496
Sau96I GGNCC 4 cut(s) 140, 454, 615, 710
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 3 cut(s) 117, 1011, 1286
SduI GDGCHC 2 cut(s) 385, 936
SfaNI GCATC 2 cut(s) 163, 1086
SfcI CTRYAG 3 cut(s) 76, 338, 720
SinI GGWCC 3 cut(s) 140, 615, 710
SmiI ATTTAAAT 1 cut(s) 39
SmiMI CAYNNNNRTG 4 cut(s) 60, 290, 939, 1275
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 6 cut(s) 34, 582, 731, 1141, 1304, 1483
SsiI CCGC 3 cut(s) 543, 1197, 1200
SspI AATATT 1 cut(s) 1518
SspMI CTAG 4 cut(s) 248, 642, 836, 1442
StyD4I CCNGG 3 cut(s) 115, 1009, 1284
StyI CCWWGG 1 cut(s) 450
SwaI ATTTAAAT 1 cut(s) 39
TaaI ACNGT 4 cut(s) 307, 554, 700, 1046
TaiI ACGT 2 cut(s) 919, 1322
TaqI TCGA 1 cut(s) 1462
TasI AATT 6 cut(s) 34, 582, 731, 1141, 1304, 1483
TauI GCSGC 1 cut(s) 1200
TfiI GAWTC 3 cut(s) 1006, 1203, 1344
Tru1I TTAA 4 cut(s) 38, 302, 989, 1296
Tru9I TTAA 4 cut(s) 38, 302, 989, 1296
TscAI CASTG 5 cut(s) 466, 559, 1008, 1051, 1506
TseI GCWGC 5 cut(s) 121, 340, 557, 722, 740
TspDTI ATGAA 7 cut(s) 437, 546, 744, 840, 853, 917, 1317
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 5 cut(s) 466, 559, 1008, 1051, 1506
VpaK11BI GGWCC 3 cut(s) 140, 615, 710
XapI RAATTY 4 cut(s) 34, 731, 1141, 1304
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 4 cut(s) 248, 642, 836, 1442
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.