Rw2G045890

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011478
Physical Location & Seq
Reverse (-)
73044980 .. 73046749
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045890.1

Sequence Viewer

Length: 699 bp
ATGGAGTTCGACCTTGAAAACCCACTAACAATTTCCCATGATATCCACTCTGAGTCGGTCACTTCTCTGTTCTCCATTGAATCCGATCACATGCCATCTGAGAATTACTTCCAAACCCTTCAAGCTGGAGACTTTGACATCTCTGTTCGAAGGGAAGCCATGGCTTCAATCTCACAGCTTTGTTGTAACTCTGATAACTTCTTATCCTACCTTGCTGTCAATTATCTTGATCGATTCTTGTCCTGCCAAGGAAAGCTGCAACCGAAACCTTGGATCATCAAGCTCCTTGCAATCTCTTGCGTTTCTTTAGCTGCCAAGATGAAGAAAACAGATTTTTCTCTTCTTGATTTTCAGAGTGACGGAGGTATCATTTTTGATACTCTAACGATAGAGAGAATGGAGTTCCTGATTTTGGGAGCTCTAAAATGGAGAATGCGGTCCATAACTCCCTTCTCTTTCATTCTCTTCTTCATTTCTTTGTTCAAGCTTGAAGATCCTCCGTTGAGGCAAGCTCTCAAAGCCAGAGCCACCCAGATCATCCTCAAAGCTCAAAATGATATGAAGCTTTTTGTGTTCAAGCCATCAATAATTGCAGCCTCTGCTCTCCTCTCTGCTTCTCATGAGTTATTCCCAATGCAATGTCCCTGCTTTAAAAAAGCACTATCCAACTGTTCCTATGTAAACAAGGTAAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

232

Amino Acids

26.32

Weight (kDa)

6.88

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 21 - 146 8.4e-16 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03270 AT4G03270
fragaria_vesca FvH4_6g44360
malus_domestica MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis pycom09g02220 pycom17g08390
rosa_chinensis RchiOBHm_Chr2g0161291
rosa_laevigata RLG00000021276
rosa_multiflora Rmu_ssc0000196.1_g000006
rosa_roxburghii Rroxscaffold_2G00088940
rosa_rugosa Rorug02G0488000 Rorug02G0488100
rosa_samantha Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana Rw2G045890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 436
AclWI GGATC 2 cut(s) 281, 488
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 7 cut(s) 17, 80, 122, 168, 484, 491, 577
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 2 cut(s) 281, 488
AlwNI CAGNNNCTG 1 cut(s) 599
ApeKI GCWGC 3 cut(s) 256, 311, 593
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 438
AsuII TTCGAA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 438
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BanII GRGCYC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 243, 298, 605
BccI CCATC 2 cut(s) 103, 589
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 3 cut(s) 257, 312, 594
BlsI GCNGC 3 cut(s) 258, 313, 595
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpmI CTGGAG 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 159, 247, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 644
BseCI ATCGAT 1 cut(s) 232
BseDI CCNNGG 3 cut(s) 159, 247, 269
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 644
BseMII CTCAG 2 cut(s) 42, 90
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 3 cut(s) 243, 298, 605
BshVI ATCGAT 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 421
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 627
BsmI GAATGC 1 cut(s) 438
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 5 cut(s) 85, 229, 273, 493, 534
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 1 cut(s) 436
BspCNI CTCAG 2 cut(s) 43, 91
BspDI ATCGAT 1 cut(s) 232
BspHI TCATGA 1 cut(s) 619
BspPI GGATC 2 cut(s) 281, 488
BspT104I TTCGAA 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 644
BssECI CCNNGG 3 cut(s) 159, 247, 269
BssMI GATC 5 cut(s) 85, 229, 273, 493, 534
BssT1I CCWWGG 3 cut(s) 159, 247, 269
Bst4CI ACNGT 1 cut(s) 671
Bst6I CTCTTC 2 cut(s) 345, 470
BstAPI GCANNNNNTGC 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 51, 99
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 537
BstKTI GATC 5 cut(s) 88, 232, 276, 496, 537
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 5 cut(s) 85, 229, 273, 493, 534
BstMWI GCNNNNNNNGC 2 cut(s) 518, 599
BstNSI RCATGY 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 243, 298, 605
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
Bsu15I ATCGAT 1 cut(s) 232
BsuTUI ATCGAT 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 599
CciI TCATGA 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 438
ClaI ATCGAT 1 cut(s) 232
CviAII CATG 4 cut(s) 38, 91, 160, 620
DdeI CTNAG 2 cut(s) 51, 99
DpnI GATC 5 cut(s) 87, 231, 275, 495, 536
DpnII GATC 5 cut(s) 85, 229, 273, 493, 534
DraI TTTAAA 1 cut(s) 652
Eam1104I CTCTTC 2 cut(s) 345, 470
EarI CTCTTC 2 cut(s) 345, 470
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 3 cut(s) 159, 247, 269
Eco24I GRGCYC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 419
EcoRV GATATC 1 cut(s) 43
EcoT14I CCWWGG 3 cut(s) 159, 247, 269
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 3 cut(s) 159, 247, 269
FaeI CATG 4 cut(s) 41, 94, 163, 623
FaiI YATR 7 cut(s) 39, 92, 161, 443, 560, 621, 678
FaqI GGGAC 1 cut(s) 627
FatI CATG 4 cut(s) 37, 90, 159, 619
Fnu4HI GCNGC 3 cut(s) 257, 312, 594
FokI GGATG 1 cut(s) 524
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 3 cut(s) 257, 312, 594
GluI GCNGC 3 cut(s) 257, 312, 594
GsuI CTGGAG 1 cut(s) 147
Hin1II CATG 4 cut(s) 41, 94, 163, 623
HindIII AAGCTT 2 cut(s) 485, 563
HinfI GANTC 3 cut(s) 53, 80, 234
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 5 cut(s) 52, 85, 100, 193, 354
Hpy188III TCNNGA 4 cut(s) 227, 344, 406, 620
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 3 cut(s) 128, 144, 460
HpyCH4III ACNGT 1 cut(s) 671
HpyCH4V TGCA 4 cut(s) 259, 290, 593, 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 599
HpyF3I CTNAG 2 cut(s) 51, 99
Hsp92II CATG 4 cut(s) 41, 94, 163, 623
Kzo9I GATC 5 cut(s) 85, 229, 273, 493, 534
LmnI GCTCC 2 cut(s) 288, 416
LpnPI CCDG 6 cut(s) 111, 256, 419, 535, 545, 658
Lsp1109I GCAGC 3 cut(s) 243, 298, 605
MaeIII GTNAC 3 cut(s) 58, 185, 356
MalI GATC 5 cut(s) 87, 231, 275, 495, 536
MboI GATC 5 cut(s) 85, 229, 273, 493, 534
MboII GAAGA 5 cut(s) 332, 334, 457, 460, 503
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 4 cut(s) 30, 103, 220, 588
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 690
MnlI CCTC 6 cut(s) 356, 498, 507, 551, 607, 617
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 518, 599
NcoI CCATGG 1 cut(s) 159
NdeII GATC 5 cut(s) 85, 229, 273, 493, 534
NlaIII CATG 4 cut(s) 41, 94, 163, 623
NmuCI GTSAC 2 cut(s) 58, 356
NspI RCATGY 1 cut(s) 94
NspV TTCGAA 1 cut(s) 148
PagI TCATGA 1 cut(s) 619
PctI GAATGC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 80, 234
PkrI GCNGC 3 cut(s) 258, 313, 595
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 421
PspPI GGNCC 1 cut(s) 438
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 493
SacI GAGCTC 1 cut(s) 421
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 3 cut(s) 257, 312, 594
Sau3AI GATC 5 cut(s) 85, 229, 273, 493, 534
Sau96I GGNCC 1 cut(s) 438
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 421
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 1 cut(s) 438
Sse9I AATT 4 cut(s) 30, 103, 220, 588
SsiI CCGC 1 cut(s) 436
SstI GAGCTC 1 cut(s) 421
StyI CCWWGG 3 cut(s) 159, 247, 269
TaaI ACNGT 1 cut(s) 671
TaqI TCGA 3 cut(s) 9, 148, 232
TaqII GACCGA 1 cut(s) 46
TasI AATT 4 cut(s) 30, 103, 220, 588
TfiI GAWTC 2 cut(s) 80, 234
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TseFI GTSAC 2 cut(s) 58, 356
TseI GCWGC 3 cut(s) 256, 311, 593
Tsp45I GTSAC 2 cut(s) 58, 356
TspDTI ATGAA 4 cut(s) 335, 448, 460, 575
TspGWI ACGGA 2 cut(s) 375, 489
VpaK11BI GGWCC 1 cut(s) 438
XceI RCATGY 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.