Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011478

Physical Location & Seq

Genomic Coordinates Reverse (-)

22710908 .. 22713300

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G228000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGTTCGACCTTGAAAACCCACTTACAATCTCCCATGACATCCACTCTGATACACTCACTTCTATGTTTTCCCTTGAATCTGATCACATGCCATCAGAGATTTACTTTCAAACCGTTCAAGCTAGAGACTTTGACATCTCCATTCGAAGGGAAGCCATAGCTTCCATCTCACAGCTTTGTTGTAACTATGATAACCTTTTGCAGTACCTTGCTGTCAATTATCTTGACCGGTTCTTGTCCTGCCAAGGAATGCTGCAACCAAAGCCATGGCTCATCAAGCTTCTTGCTATCTCCTGCGTTTCTTTAGCTGCCAAGATGAAGAAAGCAGATTTCTCTCTTGCTGATGTTCAGGGTGATGGACGCATCATTTTCGACACGCAAACGATCCAAAGGATGGAAGTGCTGATTTTGGGAGCTCTAAAATGGAGAATGCGATCCATCACACCCTTCTCTTTCATTTCATTTTTCAATTCTCTGTTCAAACTAGAAGACCCACCATTGCTGCAGGCTCTCAAAGCCAGAGCCGCCCAAATCATCTTCAAATCTCAAAAGGATGTTGAGCTTTTGGGGTTTAAGCCATCAATAATTGCTGCCTCTGCACTTCTCTCTGCTTCGCATGAATTATTCCCTATGCAATACCCCTGCTTTAAAAAAGCACTCTCCAACTGTTCATATGTAAATAAGGAAAACATGTTGCAATGCTACAGTGCAATGCAGGACATTGTGGCTGATGGGTTTGATTCAGTGTTAGAGATGGTGTCTAGCTCAGTGACAGCAGCCAATGTGCTAGACCATAATTTTTCAAGCTCTGCAGAAAGTGGAACGACTACTGTCACCGGCATGACCCCCTTAAGATTGGAGAAGGACATGAAGAGGAGAAAAATTAGTGAATATTGTAAAGATCACAGGGTCCAAATTTCTCAGATCCAAAACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

314

Amino Acids

35.35

Weight (kDa)

6.09

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03270 AT4G03270
fragaria_vesca	FvH4_6g44360
malus_domestica	MD09G1098400.v1.1 MD17G1086400.v1.1
prunus_persica	Prupe.3G228000_v2.0.a1 Prupe.3G228000_v2.0.a1
pyrus_communis	pycom09g02220 pycom17g08390
rosa_chinensis	RchiOBHm_Chr2g0161291
rosa_laevigata	RLG00000021276
rosa_multiflora	Rmu_ssc0000196.1_g000006
rosa_roxburghii	Rroxscaffold_2G00088940
rosa_rugosa	Rorug02G0488000 Rorug02G0488100
rosa_samantha	Rh2AG554600 Rh2BG567900 Rh2CG538400 Rh2DG577400
rosa_wichuraiana	Rw2G045890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	397
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	3 cut(s)	382, 432, 922
AcsI	RAATTY	1 cut(s)	918
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	150, 397
AflII	CTTAAG	1 cut(s)	853
AflIII	ACRYGT	1 cut(s)	693
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	8 cut(s)	17, 80, 113, 122, 472, 484, 544, 807
AluBI	AGCT	9 cut(s)	125, 164, 178, 283, 311, 419, 565, 768, 810
AluI	AGCT	9 cut(s)	125, 164, 178, 283, 311, 419, 565, 768, 810
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	382, 432, 922
ApeKI	GCWGC	5 cut(s)	256, 311, 505, 593, 779
ApoI	RAATTY	1 cut(s)	918
AsiGI	ACCGGT	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	913
AsuHPI	GGTGA	2 cut(s)	368, 829
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	913
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	5 cut(s)	243, 298, 492, 580, 791
BccI	CCATC	8 cut(s)	103, 176, 353, 391, 449, 589, 728, 751
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	4 cut(s)	126, 488, 765, 791
BfmI	CTRYAG	3 cut(s)	506, 706, 813
BfrI	CTTAAG	1 cut(s)	853
BisI	GCNGC	6 cut(s)	257, 312, 506, 528, 594, 780
BlsI	GCNGC	6 cut(s)	258, 313, 507, 529, 595, 781
Bme18I	GGWCC	1 cut(s)	913
BmgT120I	GGNCC	1 cut(s)	913
BmiI	GGNNCC	1 cut(s)	914
BmsI	GCATC	1 cut(s)	375
BoxI	GACNNNNGTC	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	247, 269
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 397
Bse118I	RCCGGY	2 cut(s)	231, 839
Bse3DI	GCAATG	3 cut(s)	500, 707, 720
BseDI	CCNNGG	2 cut(s)	247, 269
BseGI	GGATG	3 cut(s)	42, 402, 562
BseLI	CCNNNNNNNGG	2 cut(s)	150, 397
BseMI	GCAATG	3 cut(s)	500, 707, 720
BseMII	CTCAG	2 cut(s)	783, 938
BseRI	GAGGAG	1 cut(s)	892
BseXI	GCAGC	5 cut(s)	243, 298, 492, 580, 791
BsgI	GTGCAG	1 cut(s)	585
BshTI	ACCGGT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	232, 840
BslI	CCNNNNNNNGG	2 cut(s)	150, 397
BsmAI	GTCTC	1 cut(s)	123
BsmI	GAATGC	2 cut(s)	258, 438
Bsp119I	TTCGAA	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	5 cut(s)	85, 387, 437, 904, 927
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	1 cut(s)	528
BspCNI	CTCAG	2 cut(s)	782, 937
BspLI	GGNNCC	1 cut(s)	914
BspMAI	CTGCAG	2 cut(s)	510, 817
BspPI	GGATC	3 cut(s)	382, 432, 922
BspT104I	TTCGAA	1 cut(s)	148
BspTI	CTTAAG	1 cut(s)	853
BsrDI	GCAATG	3 cut(s)	500, 707, 720
BsrFI	RCCGGY	2 cut(s)	231, 839
BssAI	RCCGGY	2 cut(s)	231, 839
BssECI	CCNNGG	2 cut(s)	247, 269
BssMI	GATC	5 cut(s)	85, 387, 437, 904, 927
BssT1I	CCWWGG	2 cut(s)	247, 269
Bst4CI	ACNGT	4 cut(s)	118, 671, 710, 835
Bst6I	CTCTTC	1 cut(s)	869
BstAFI	CTTAAG	1 cut(s)	853
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	769, 924
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	42, 402, 562
BstKTI	GATC	5 cut(s)	88, 390, 440, 907, 930
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	5 cut(s)	85, 387, 437, 904, 927
BstMWI	GCNNNNNNNGC	5 cut(s)	265, 280, 518, 527, 599
BstNSI	RCATGY	2 cut(s)	94, 697
BstPAI	GACNNNNGTC	1 cut(s)	833
BstSFI	CTRYAG	3 cut(s)	506, 706, 813
BstV1I	GCAGC	5 cut(s)	243, 298, 492, 580, 791
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	927
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	927
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	42, 402, 562
BtsIMutI	CAGTG	3 cut(s)	715, 753, 777
Cac8I	GCNNGC	1 cut(s)	510
Cfr10I	RCCGGY	2 cut(s)	231, 839
Cfr13I	GGNCC	1 cut(s)	913
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	208
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	7 cut(s)	38, 91, 270, 620, 694, 844, 871
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	769, 924
DpnI	GATC	5 cut(s)	87, 389, 439, 906, 929
DpnII	GATC	5 cut(s)	85, 387, 437, 904, 927
DraI	TTTAAA	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
Ecl136II	GAGCTC	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	247, 269
Eco24I	GRGCYC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	913
Eco53kI	GAGCTC	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	419
EcoT14I	CCWWGG	2 cut(s)	247, 269
EcoT38I	GRGCYC	1 cut(s)	421
ErhI	CCWWGG	2 cut(s)	247, 269
FaeI	CATG	7 cut(s)	41, 94, 273, 623, 697, 847, 874
FatI	CATG	7 cut(s)	37, 90, 269, 619, 693, 843, 870
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	6 cut(s)	257, 312, 506, 528, 594, 780
FokI	GGATG	3 cut(s)	29, 409, 569
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	6 cut(s)	257, 312, 506, 528, 594, 780
FspBI	CTAG	4 cut(s)	126, 488, 765, 791
GluI	GCNGC	6 cut(s)	257, 312, 506, 528, 594, 780
HapII	CCGG	2 cut(s)	232, 840
HgaI	GACGC	1 cut(s)	372
Hin1II	CATG	7 cut(s)	41, 94, 273, 623, 697, 847, 874
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	2 cut(s)	80, 743
HpaII	CCGG	2 cut(s)	232, 840
HphI	GGTGA	2 cut(s)	368, 829
Hpy188I	TCNGA	4 cut(s)	52, 85, 100, 927
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	144, 460, 859
HpyCH4III	ACNGT	4 cut(s)	118, 671, 710, 835
HpyCH4V	TGCA	9 cut(s)	205, 259, 508, 602, 637, 700, 713, 718, 815
HpyF10VI	GCNNNNNNNGC	5 cut(s)	265, 280, 518, 527, 599
HpyF3I	CTNAG	2 cut(s)	769, 924
Hsp92II	CATG	7 cut(s)	41, 94, 273, 623, 697, 847, 874
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	85, 387, 437, 904, 927
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	5 cut(s)	243, 298, 492, 580, 791
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	4 cut(s)	126, 488, 765, 791
MaeIII	GTNAC	3 cut(s)	185, 772, 835
MalI	GATC	5 cut(s)	87, 389, 439, 906, 929
MboI	GATC	5 cut(s)	85, 387, 437, 904, 927
MboII	GAAGA	4 cut(s)	334, 503, 532, 886
MflI	RGATCY	1 cut(s)	927
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	7 cut(s)	220, 472, 588, 623, 799, 885, 918
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	2 cut(s)	607, 870
MseI	TTAA	3 cut(s)	576, 651, 854
MslI	CAYNNNNRTG	2 cut(s)	65, 842
MspCI	CTTAAG	1 cut(s)	853
MspI	CCGG	2 cut(s)	232, 840
Mva1269I	GAATGC	2 cut(s)	258, 438
MwoI	GCNNNNNNNGC	5 cut(s)	265, 280, 518, 527, 599
NcoI	CCATGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	5 cut(s)	85, 387, 437, 904, 927
NlaIII	CATG	7 cut(s)	41, 94, 273, 623, 697, 847, 874
NlaIV	GGNNCC	1 cut(s)	914
NmuCI	GTSAC	2 cut(s)	772, 835
NspI	RCATGY	2 cut(s)	94, 697
NspV	TTCGAA	1 cut(s)	148
PciI	ACATGT	1 cut(s)	693
PctI	GAATGC	2 cut(s)	258, 438
PfeI	GAWTC	2 cut(s)	80, 743
PflMI	CCANNNNNTGG	1 cut(s)	397
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	6 cut(s)	258, 313, 507, 529, 595, 781
PscI	ACATGT	1 cut(s)	693
PshAI	GACNNNNGTC	1 cut(s)	833
Psp124BI	GAGCTC	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	914
PspPI	GGNCC	1 cut(s)	913
PstI	CTGCAG	2 cut(s)	510, 817
PsuI	RGATCY	1 cut(s)	927
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	65, 842
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	3 cut(s)	576, 651, 854
SatI	GCNGC	6 cut(s)	257, 312, 506, 528, 594, 780
Sau3AI	GATC	5 cut(s)	85, 387, 437, 904, 927
Sau96I	GGNCC	1 cut(s)	913
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	3 cut(s)	506, 706, 813
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	1 cut(s)	913
SmiMI	CAYNNNNRTG	2 cut(s)	65, 842
SmlI	CTYRAG	1 cut(s)	853
SmoI	CTYRAG	1 cut(s)	853
Sse9I	AATT	7 cut(s)	220, 472, 588, 623, 799, 885, 918
SsiI	CCGC	1 cut(s)	528
SspI	AATATT	1 cut(s)	896
SspMI	CTAG	4 cut(s)	126, 488, 765, 791
SstI	GAGCTC	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	247, 269
TaaI	ACNGT	4 cut(s)	118, 671, 710, 835
TaqI	TCGA	3 cut(s)	9, 148, 375
TasI	AATT	7 cut(s)	220, 472, 588, 623, 799, 885, 918
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	2 cut(s)	80, 743
Tru1I	TTAA	3 cut(s)	576, 651, 854
Tru9I	TTAA	3 cut(s)	576, 651, 854
TscAI	CASTG	3 cut(s)	715, 753, 777
TseFI	GTSAC	2 cut(s)	772, 835
TseI	GCWGC	5 cut(s)	256, 311, 505, 593, 779
Tsp45I	GTSAC	2 cut(s)	772, 835
TspDTI	ATGAA	6 cut(s)	335, 448, 453, 636, 663, 887
TspRI	CASTG	3 cut(s)	715, 753, 777
Van91I	CCANNNNNTGG	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	913
XapI	RAATTY	1 cut(s)	918
XceI	RCATGY	2 cut(s)	94, 697
XspI	CTAG	4 cut(s)	126, 488, 765, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.