AT4G03820

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007624
Physical Location & Seq
Reverse (-)
1771833 .. 1774532
2700 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03820.2

Sequence Viewer

Length: 1314 bp
ATGGAAGAATCATCAAACCAACAAATCCTCAACTCCGAGACCCGACCCGACCCGATTCAAAAACCACCGGAATCACCAGCCACCAAACTCTCATTCCCGAGACTCTTCCTCTGGTTTGATCAATCAAATCGCATCAAAACTCTGCTCTCATGGTCCATCTTCTTCCTCCTCGCCGTCATCGTCCCAATGATCTCACACTTCGTGCTAATCTGCGCCGATTGCGATTTCAAACACCGTCGTCCTTACGACGGTTTAGTGCAGCTTTCGTTATCGATCTTCGCCGGAATCTCGTTCGTTAGTCTCTCAGATTGGTCCAAGAAATATGGAATCCGAAGGTTTCTCTTCTTCGATAAGCTTAAAGATGTTAGCGATAAAGTTAGGATCGGATACGAAGCTAAAATCCAGAGATCAATGAAGCTACTAGCTATCTTTGTCCTTCCATCGACAACGCTTCAAGCTATCTATCGCATTTGGTGGTATGCTTCAGGCTTTAACCAAATCCCTTACATTATAAACCCAACGCTGAGCCATGTCTTAGCCTGCACACTCCAGCTCTCTTCTTGGCTCTACCGTACATCACTCTTCATCATTGCTTGTATCCTCTACCAAAACATCTGCCACCTCCAGGTCCTCCGTCTTGATGAATTCGCACGCTGCTTCGCCTCTGAGATCAAAGATTTCAGTTCCATACTCGCCGAGCATCTCAAAATCCGTCGTGAACTGAAGATTGTCAGTCACCGGTTCAGACGATTCATTCTTTTGTCATTGTTTTTCGTCACTGCCACTCAGTTCATGGCATTGCTGACTACCATCAGAGCTAGTGTTCCCTTTAATATCTACGAAGTTGGCGAGCTCGCGTTATGCTCCACAAGCTTGGTGTCAGGACTATTCATATGCTTGAAAAGTGCAACACAAATGACTCACAAAGCTCAATCAGTAACGAGCATCGCCACAAAGTGGAACGTGTGCGCGTCTTTAGATACATTTGATGTTCTTTATGACGGAGAGACTCCTAAATGTCCAACAACTACACAACATTCCCAGATTTTATCGCGTCGTCGTAATGTTGTTCAATCGTCTGATGATGATGAAGAAGGAGAAGGAGATGACAATGATCTTGAGATACATCCAATCTTTGCCCGCGCCATTTCTTCTCAGAAACGTCAAGCTCTAGTGACCTATCTAGAGAACAACAGAGCAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCATCGAACTTGCTCTTCTTCTATGGCTGCTCAAAAAGACAATCATGAACATAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

437

Amino Acids

50.25

Weight (kDa)

8.99

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 36 - 420 1.1e-150 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 957
AccII CGCG 4 cut(s) 857, 971, 1054, 1143
AciI CCGC 1 cut(s) 1141
AclWI GGATC 2 cut(s) 389, 1211
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 3 cut(s) 468, 743, 1237
AdeI CACNNNGTG 2 cut(s) 202, 957
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 3 cut(s) 248, 625, 957
AflIII ACRYGT 1 cut(s) 963
AgeI ACCGGT 1 cut(s) 738
AgsI TTSAA 5 cut(s) 59, 229, 455, 901, 1073
AjnI CCWGG 1 cut(s) 624
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
Alw21I GWGCWC 1 cut(s) 855
Alw26I GTCTC 4 cut(s) 32, 94, 305, 1001
AlwI GGATC 2 cut(s) 389, 1211
Ama87I CYCGRG 1 cut(s) 97
ApeKI GCWGC 3 cut(s) 259, 654, 1282
ApoI RAATTY 1 cut(s) 644
AsiGI ACCGGT 1 cut(s) 738
AspLEI GCGC 3 cut(s) 215, 971, 1145
AspS9I GGNCC 3 cut(s) 153, 312, 628
AsuHPI GGTGA 2 cut(s) 66, 728
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 3 cut(s) 153, 312, 628
BanII GRGCYC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 855
BbvI GCAGC 3 cut(s) 271, 641, 1269
BccI CCATC 3 cut(s) 164, 448, 818
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 626
BciVI GTATCC 2 cut(s) 380, 608
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 4 cut(s) 32, 94, 305, 1001
BfaI CTAG 4 cut(s) 422, 819, 1172, 1184
BfuI GTATCC 2 cut(s) 380, 608
BisI GCNGC 3 cut(s) 260, 655, 1283
BlpI GCTNAGC 1 cut(s) 524
BlsI GCNGC 3 cut(s) 261, 656, 1284
Bme1390I CCNGG 1 cut(s) 626
Bme18I GGWCC 3 cut(s) 153, 312, 628
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 153, 312, 628
BmrFI CCNGG 1 cut(s) 626
BmsI GCATC 4 cut(s) 141, 709, 954, 1266
BpmI CTGGAG 2 cut(s) 533, 608
Bpu1102I GCTNAGC 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 1139
Bsa29I ATCGAT 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 32
BsaWI WCCGGW 2 cut(s) 67, 738
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 625, 957
Bse118I RCCGGY 1 cut(s) 738
Bse3DI GCAATG 2 cut(s) 588, 797
BseBI CCWGG 1 cut(s) 626
BseCI ATCGAT 1 cut(s) 272
BseGI GGATG 1 cut(s) 1126
BseLI CCNNNNNNNGG 3 cut(s) 248, 625, 957
BseMI GCAATG 2 cut(s) 588, 797
BseMII CTCAG 5 cut(s) 318, 515, 657, 800, 1169
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 271, 641, 1269
BsgI GTGCAG 2 cut(s) 278, 526
Bsh1236I CGCG 4 cut(s) 857, 971, 1054, 1143
BshTI ACCGGT 1 cut(s) 738
BshVI ATCGAT 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 855
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 3 cut(s) 68, 282, 739
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 3 cut(s) 248, 625, 957
BsmAI GTCTC 4 cut(s) 32, 94, 305, 1001
BsmFI GGGAC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 855
Bsp143I GATC 9 cut(s) 118, 189, 273, 381, 407, 669, 1114, 1203, 1248
Bsp1720I GCTNAGC 1 cut(s) 524
BspACI CCGC 1 cut(s) 1141
BspCNI CTCAG 5 cut(s) 317, 516, 658, 799, 1168
BspDI ATCGAT 1 cut(s) 272
BspFNI CGCG 4 cut(s) 857, 971, 1054, 1143
BspHI TCATGA 1 cut(s) 1299
BspPI GGATC 2 cut(s) 389, 1211
BspQI GCTCTTC 1 cut(s) 1275
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 588, 797
BsrFI RCCGGY 1 cut(s) 738
BssAI RCCGGY 1 cut(s) 738
BssMI GATC 9 cut(s) 118, 189, 273, 381, 407, 669, 1114, 1203, 1248
Bst2UI CCWGG 1 cut(s) 626
Bst4CI ACNGT 4 cut(s) 236, 251, 572, 1210
Bst6I CTCTTC 5 cut(s) 110, 347, 562, 587, 1275
BstC8I GCNNGC 5 cut(s) 541, 652, 851, 855, 1141
BstDEI CTNAG 6 cut(s) 304, 524, 535, 666, 786, 1155
BstF5I GGATG 1 cut(s) 1126
BstFNI CGCG 4 cut(s) 857, 971, 1054, 1143
BstHHI GCGC 3 cut(s) 215, 971, 1145
BstKTI GATC 9 cut(s) 121, 192, 276, 384, 410, 672, 1117, 1206, 1251
BstMAI GTCTC 4 cut(s) 32, 94, 305, 1001
BstMBI GATC 9 cut(s) 118, 189, 273, 381, 407, 669, 1114, 1203, 1248
BstMWI GCNNNNNNNGC 2 cut(s) 219, 870
BstNI CCWGG 1 cut(s) 626
BstSCI CCNGG 1 cut(s) 624
BstUI CGCG 4 cut(s) 857, 971, 1054, 1143
BstV1I GCAGC 3 cut(s) 271, 641, 1269
BstXI CCANNNNNNTGG 1 cut(s) 874
Bsu15I ATCGAT 1 cut(s) 272
BsuI GTATCC 2 cut(s) 380, 608
BsuTUI ATCGAT 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 931
BtsCI GGATG 1 cut(s) 1126
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 2 cut(s) 777, 1206
Cac8I GCNNGC 5 cut(s) 541, 652, 851, 855, 1141
CciI TCATGA 1 cut(s) 1299
CfoI GCGC 3 cut(s) 215, 971, 1145
Cfr10I RCCGGY 1 cut(s) 738
Cfr13I GGNCC 3 cut(s) 153, 312, 628
ClaI ATCGAT 1 cut(s) 272
CseI GACGC 2 cut(s) 960, 1043
Csp6I GTAC 1 cut(s) 573
CspAI ACCGGT 1 cut(s) 738
CviAII CATG 6 cut(s) 150, 530, 793, 1236, 1300, 1311
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 6 cut(s) 304, 524, 535, 666, 786, 1155
DpnI GATC 9 cut(s) 120, 191, 275, 383, 409, 671, 1116, 1205, 1250
DpnII GATC 9 cut(s) 118, 189, 273, 381, 407, 669, 1114, 1203, 1248
DraIII CACNNNGTG 2 cut(s) 202, 957
Eam1104I CTCTTC 5 cut(s) 110, 347, 562, 587, 1275
EarI CTCTTC 5 cut(s) 110, 347, 562, 587, 1275
Ecl136II GAGCTC 1 cut(s) 853
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 3 cut(s) 153, 312, 628
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 3 cut(s) 468, 743, 1237
Eco88I CYCGRG 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 853
EcoO109I RGGNCCY 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 624
EcoT38I GRGCYC 1 cut(s) 855
FaeI CATG 6 cut(s) 153, 533, 796, 1239, 1303, 1314
FaqI GGGAC 1 cut(s) 167
FatI CATG 6 cut(s) 149, 529, 792, 1235, 1299, 1310
FauI CCCGC 1 cut(s) 1148
FauNDI CATATG 1 cut(s) 893
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 260, 655, 1283
FokI GGATG 1 cut(s) 1113
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 3 cut(s) 260, 655, 1283
FspBI CTAG 4 cut(s) 422, 819, 1172, 1184
GlaI GCGC 3 cut(s) 214, 970, 1144
GluI GCNGC 3 cut(s) 260, 655, 1283
GsuI CTGGAG 2 cut(s) 533, 608
HapII CCGG 3 cut(s) 68, 282, 739
HgaI GACGC 2 cut(s) 960, 1043
HhaI GCGC 3 cut(s) 215, 971, 1145
Hin1II CATG 6 cut(s) 153, 533, 796, 1239, 1303, 1314
Hin6I GCGC 3 cut(s) 213, 969, 1143
HinP1I GCGC 3 cut(s) 213, 969, 1143
HindIII AAGCTT 2 cut(s) 353, 871
HpaII CCGG 3 cut(s) 68, 282, 739
HphI GGTGA 2 cut(s) 66, 728
Hpy166II GTNNAC 2 cut(s) 719, 1213
Hpy188I TCNGA 9 cut(s) 37, 307, 332, 386, 667, 746, 815, 1081, 1158
Hpy188III TCNNGA 8 cut(s) 97, 403, 638, 716, 882, 1118, 1184, 1300
Hpy8I GTNNAC 2 cut(s) 719, 1213
Hpy99I CGWCG 5 cut(s) 240, 251, 717, 1059, 1062
HpyAV CCTTC 4 cut(s) 327, 446, 1088, 1094
HpyCH4III ACNGT 4 cut(s) 236, 251, 572, 1210
HpyCH4IV ACGT 2 cut(s) 963, 1162
HpyCH4V TGCA 3 cut(s) 259, 543, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 870
HpyF3I CTNAG 6 cut(s) 304, 524, 535, 666, 786, 1155
HpySE526I ACGT 2 cut(s) 963, 1162
Hsp92II CATG 6 cut(s) 153, 533, 796, 1239, 1303, 1314
HspAI GCGC 3 cut(s) 213, 969, 1143
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 9 cut(s) 118, 189, 273, 381, 407, 669, 1114, 1203, 1248
LguI GCTCTTC 1 cut(s) 1275
LmnI GCTCC 1 cut(s) 869
Lsp1109I GCAGC 3 cut(s) 271, 641, 1269
LweI GCATC 4 cut(s) 141, 709, 954, 1266
MaeI CTAG 4 cut(s) 422, 819, 1172, 1184
MaeII ACGT 2 cut(s) 963, 1162
MaeIII GTNAC 4 cut(s) 734, 775, 937, 1174
MalI GATC 9 cut(s) 120, 191, 275, 383, 409, 671, 1116, 1205, 1250
MboI GATC 9 cut(s) 118, 189, 273, 381, 407, 669, 1114, 1203, 1248
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 1 cut(s) 644
MlyI GAGTC 3 cut(s) 96, 913, 1003
MmeI TCCRAC 1 cut(s) 1046
MnlI CCTC 8 cut(s) 38, 119, 176, 179, 611, 632, 641, 673
MseI TTAA 3 cut(s) 357, 492, 831
MspI CCGG 3 cut(s) 68, 282, 739
MspR9I CCNGG 1 cut(s) 626
MvaI CCWGG 1 cut(s) 626
MvnI CGCG 4 cut(s) 857, 971, 1054, 1143
MwoI GCNNNNNNNGC 2 cut(s) 219, 870
NdeI CATATG 1 cut(s) 893
NdeII GATC 9 cut(s) 118, 189, 273, 381, 407, 669, 1114, 1203, 1248
NlaIII CATG 6 cut(s) 153, 533, 796, 1239, 1303, 1314
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 3 cut(s) 734, 775, 1174
PagI TCATGA 1 cut(s) 1299
PciSI GCTCTTC 1 cut(s) 1275
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 846
PfeI GAWTC 7 cut(s) 8, 55, 71, 285, 327, 750, 1218
PflMI CCANNNNNTGG 1 cut(s) 957
PinAI ACCGGT 1 cut(s) 738
PkrI GCNGC 3 cut(s) 261, 656, 1284
PleI GAGTC 3 cut(s) 96, 913, 1003
PpsI GAGTC 3 cut(s) 96, 913, 1003
PpuMI RGGWCCY 1 cut(s) 628
PsiI TTATAA 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 628
Psp6I CCWGG 1 cut(s) 624
PspGI CCWGG 1 cut(s) 624
PspPI GGNCC 3 cut(s) 153, 312, 628
PspPPI RGGWCCY 1 cut(s) 628
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
SacI GAGCTC 1 cut(s) 855
SapI GCTCTTC 1 cut(s) 1275
SaqAI TTAA 3 cut(s) 357, 492, 831
SatI GCNGC 3 cut(s) 260, 655, 1283
Sau3AI GATC 9 cut(s) 118, 189, 273, 381, 407, 669, 1114, 1203, 1248
Sau96I GGNCC 3 cut(s) 153, 312, 628
SchI GAGTC 3 cut(s) 96, 913, 1003
ScrFI CCNGG 1 cut(s) 626
SduI GDGCHC 1 cut(s) 855
SfaNI GCATC 4 cut(s) 141, 709, 954, 1266
SinI GGWCC 3 cut(s) 153, 312, 628
SmlI CTYRAG 1 cut(s) 1118
SmoI CTYRAG 1 cut(s) 1118
Sse9I AATT 1 cut(s) 644
SsiI CCGC 1 cut(s) 1141
SspMI CTAG 4 cut(s) 422, 819, 1172, 1184
SstI GAGCTC 1 cut(s) 855
StyD4I CCNGG 1 cut(s) 624
TaaI ACNGT 4 cut(s) 236, 251, 572, 1210
TaiI ACGT 2 cut(s) 966, 1165
TaqI TCGA 4 cut(s) 272, 348, 443, 1260
TasI AATT 1 cut(s) 644
TfiI GAWTC 7 cut(s) 8, 55, 71, 285, 327, 750, 1218
Tru1I TTAA 3 cut(s) 357, 492, 831
Tru9I TTAA 3 cut(s) 357, 492, 831
TscAI CASTG 2 cut(s) 784, 1213
TseFI GTSAC 3 cut(s) 734, 775, 1174
TseI GCWGC 3 cut(s) 259, 654, 1282
Tsp45I GTSAC 3 cut(s) 734, 775, 1174
TspDTI ATGAA 7 cut(s) 428, 574, 657, 742, 781, 880, 1104
TspGWI ACGGA 4 cut(s) 623, 701, 1017, 1230
TspRI CASTG 2 cut(s) 784, 1213
Van91I CCANNNNNTGG 1 cut(s) 957
VpaK11BI GGWCC 3 cut(s) 153, 312, 628
XapI RAATTY 1 cut(s) 644
XbaI TCTAGA 1 cut(s) 1183
XcmI CCANNNNNNNNNTGG 1 cut(s) 790
XspI CTAG 4 cut(s) 422, 819, 1172, 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.