RchiOBHm_Chr5g0001771

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007624
Physical Location & Seq
Reverse (-)
982066 .. 985601
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28318

Sequence Viewer

Length: 1347 bp
ATGGATTTTCTTGTCTCTTTGTTCATTTATATTCAGACTTCCAAAGAAAGCTTATACAGAACCATGGAAGATCAAAGCCATCCAATTCTGCCAAAACAGACCTCTATCTCCAGCCATGAAGGACTTGAGTTGCCGAGCTTTGGTTCGTGGCTGAAATGGGTCTTTGTGGACCAGTCTAGTATATGGAGAACTGGTCTTTCATGGTCAATCTTCTTCGTCTTAGCCATTGGCGTACCACTAGTCACTCACTTCCTTCTCTCCTGCTCGAGCTGTGATGCGAACCATAGCAGACCTTACCATGTTGTTTCCCAGATTTCGCTTTCCTTGTTCGCAATGCTCTCCTTCATTAGCCTCTCCTGCTGGACTCGTAAATTTGGTCTGAAGAGGTTTCTCTTCCTTGACAAGTTAAGTGATGCAAGTGAGAAAGTCCGTCATGAATATAAGCAACAGTTCCAGAATTCAATGAAGCTCCTATGCTTGATTGTCTTCCCCTGTTTTGCTGCAGAGTGTGTGTACAAAATCTGGTGGTATGTCTCAGGGGCCACAGAACTACCATACTATGGTAACATGTACTTGAGTGACACAATATTATGCATGTTGGAGCTGTGTTCATGGCTTTATAGGACCACAATTTTCTTCCTGGTGTGTGTTCTGTTCCGGCTCATTTGCCATCTGCAAATACTAAGACTAGAAATTTACGCGCTAGTTTTTCAAAAGGAAACCGAGGTGGAGACAATAATGATGGAACACAACAAGATCAGAAGGACCTTTAGGATTATAAGCCACAGGTTTCGAGCGTTCATCTTGATCTCTCTGATTATGGTTACAGCTAGTCAGCTCGCGTTTCTTGTCATGATAACCAGGTCCAGTGCTCATGTTAATATCTTCACGGCTGGAGAACTCGCTTTATGTTCTATAAGCCTTGTGACTAGTCTATTCATATGTTTGCGGAGTGCAACCAAAGTAACACATAAAGCACAGAAAGTTACTGGGCTTGCTGCAAAGTGGCATGTCTGTGCCACAATCCACTCTTTTGATTACGCAGAAACTGAGACTCCGATGGTGCCTCAGGTTTCCTCAGATCATCTAGTGTTTCCCTTCGGTGCTGATTTGGAATCAGATGATGAAGAAGGGGACGAAGAAGACGATCTTGACAACACCAAGTTGGTGCCAATTTTCACAAACACAATCTCATTCCAGAAGAGACAAGCTCTAGTGAAATATTTAGAGCATAATAGAGCAGGAATTACAGTGTTTGGGTTCATGGTGGACAGAACATGGCTTCACTCTATTTTTGGAATTCAGCTGGCTCTTCTTCTCTGGATGCTCAACAAGACAATTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

448

Amino Acids

51.63

Weight (kDa)

6.96

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 43 - 434 7.5e-162 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
AccB1I GGYRCC 2 cut(s) 1063, 1168
AccB7I CCANNNNNTGG 1 cut(s) 560
AccII CGCG 2 cut(s) 701, 842
AciI CCGC 1 cut(s) 949
AcsI RAATTY 4 cut(s) 371, 457, 693, 1299
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 3 cut(s) 234, 515, 572
AfiI CCNNNNNNNGG 2 cut(s) 140, 560
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 2 cut(s) 462, 713
AhlI ACTAGT 2 cut(s) 238, 929
AjnI CCWGG 2 cut(s) 639, 860
AluBI AGCT 9 cut(s) 51, 138, 270, 469, 604, 830, 838, 1211, 1306
AluI AGCT 9 cut(s) 51, 138, 270, 469, 604, 830, 838, 1211, 1306
Alw21I GWGCWC 1 cut(s) 874
Alw26I GTCTC 5 cut(s) 19, 538, 725, 1046, 1198
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 500, 998
ApoI RAATTY 4 cut(s) 371, 457, 693, 1299
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 5 cut(s) 169, 540, 624, 765, 864
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 4 cut(s) 169, 624, 765, 864
AxyI CCTNAGG 1 cut(s) 1068
BanI GGYRCC 2 cut(s) 1063, 1168
BbsI GAAGAC 2 cut(s) 478, 1149
Bbv12I GWGCWC 1 cut(s) 874
BbvI GCAGC 2 cut(s) 487, 985
BccI CCATC 4 cut(s) 87, 678, 736, 1054
BceAI ACGGC 1 cut(s) 906
BciT130I CCWGG 2 cut(s) 641, 862
BcoDI GTCTC 5 cut(s) 19, 538, 725, 1046, 1198
BcuI ACTAGT 2 cut(s) 238, 929
BfaI CTAG 8 cut(s) 177, 239, 689, 704, 831, 930, 1088, 1214
BfmI CTRYAG 1 cut(s) 501
BisI GCNGC 2 cut(s) 501, 999
BlsI GCNGC 2 cut(s) 502, 1000
Bme1390I CCNGG 2 cut(s) 641, 862
Bme18I GGWCC 4 cut(s) 169, 624, 765, 864
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 5 cut(s) 169, 540, 624, 765, 864
BmiI GGNNCC 3 cut(s) 541, 1065, 1170
BmrFI CCNGG 2 cut(s) 641, 862
BmrI ACTGGG 1 cut(s) 999
BmsI GCATC 3 cut(s) 265, 403, 1314
BmuI ACTGGG 1 cut(s) 999
BpiI GAAGAC 2 cut(s) 478, 1149
BplI GAGNNNNNCTC 2 cut(s) 1195, 1227
BpmI CTGGAG 2 cut(s) 94, 915
BpuEI CTTGAG 2 cut(s) 146, 595
BsaJI CCNNGG 2 cut(s) 63, 723
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 1039, 1069
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 560
Bse1I ACTGG 4 cut(s) 172, 196, 867, 994
Bse21I CCTNAGG 1 cut(s) 1068
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 641, 862
BseDI CCNNGG 2 cut(s) 63, 723
BseGI GGATG 2 cut(s) 79, 1329
BseLI CCNNNNNNNGG 2 cut(s) 140, 560
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 4 cut(s) 549, 1041, 1082, 1092
BseNI ACTGG 4 cut(s) 172, 196, 867, 994
BseXI GCAGC 2 cut(s) 487, 985
Bsh1236I CGCG 2 cut(s) 701, 842
BshFI GGCC 1 cut(s) 542
BshNI GGYRCC 2 cut(s) 1063, 1168
BsiHKAI GWGCWC 1 cut(s) 874
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 658
BslFI GGGAC 1 cut(s) 1148
BslI CCNNNNNNNGG 2 cut(s) 140, 560
BsmAI GTCTC 5 cut(s) 19, 538, 725, 1046, 1198
BsmFI GGGAC 1 cut(s) 1148
BsnI GGCC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 874
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 5 cut(s) 70, 756, 807, 1081, 1147
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 949
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 4 cut(s) 548, 1042, 1081, 1091
BspFNI CGCG 2 cut(s) 701, 842
BspHI TCATGA 2 cut(s) 433, 852
BspLI GGNNCC 3 cut(s) 541, 1065, 1170
BspMAI CTGCAG 1 cut(s) 505
BspQI GCTCTTC 1 cut(s) 1317
BspT107I GGYRCC 2 cut(s) 1063, 1168
BsrDI GCAATG 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 4 cut(s) 172, 196, 867, 994
BssECI CCNNGG 2 cut(s) 63, 723
BssMI GATC 5 cut(s) 70, 756, 807, 1081, 1147
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 641, 862
Bst4CI ACNGT 2 cut(s) 450, 1252
Bst6I CTCTTC 4 cut(s) 377, 398, 1196, 1317
BstAUI TGTACA 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 840, 996, 1308
BstDEI CTNAG 6 cut(s) 220, 535, 683, 1050, 1068, 1078
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 79, 1329
BstFNI CGCG 2 cut(s) 701, 842
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 5 cut(s) 73, 759, 810, 1084, 1150
BstMAI GTCTC 5 cut(s) 19, 538, 725, 1046, 1198
BstMBI GATC 5 cut(s) 70, 756, 807, 1081, 1147
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 2 cut(s) 641, 862
BstNSI RCATGY 3 cut(s) 571, 598, 1013
BstSCI CCNGG 2 cut(s) 639, 860
BstSFI CTRYAG 1 cut(s) 501
BstUI CGCG 2 cut(s) 701, 842
BstV1I GCAGC 2 cut(s) 487, 985
BstV2I GAAGAC 2 cut(s) 478, 1149
Bsu36I CCTNAGG 1 cut(s) 1068
BsuRI GGCC 1 cut(s) 542
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 79, 1329
BtsIMutI CAGTG 2 cut(s) 874, 1257
Cac8I GCNNGC 3 cut(s) 840, 996, 1308
CaiI CAGNNNCTG 1 cut(s) 1049
CciI TCATGA 2 cut(s) 433, 852
CfoI GCGC 1 cut(s) 703
Cfr13I GGNCC 5 cut(s) 169, 540, 624, 765, 864
CsiI ACCWGGT 1 cut(s) 860
Csp6I GTAC 3 cut(s) 233, 514, 571
CviQI GTAC 3 cut(s) 233, 514, 571
DdeI CTNAG 6 cut(s) 220, 535, 683, 1050, 1068, 1078
DpnI GATC 5 cut(s) 72, 758, 809, 1083, 1149
DpnII GATC 5 cut(s) 70, 756, 807, 1081, 1147
Eam1104I CTCTTC 4 cut(s) 377, 398, 1196, 1317
EarI CTCTTC 4 cut(s) 377, 398, 1196, 1317
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 4 cut(s) 169, 624, 765, 864
Eco57I CTGAAG 1 cut(s) 401
Eco81I CCTNAGG 1 cut(s) 1068
Eco88I CYCGRG 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 765
EcoRI GAATTC 2 cut(s) 457, 1299
EcoRII CCWGG 2 cut(s) 639, 860
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 63
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FaqI GGGAC 1 cut(s) 1148
FauNDI CATATG 1 cut(s) 941
Fnu4HI GCNGC 2 cut(s) 501, 999
FokI GGATG 2 cut(s) 66, 1336
Fsp4HI GCNGC 2 cut(s) 501, 999
FspBI CTAG 8 cut(s) 177, 239, 689, 704, 831, 930, 1088, 1214
GlaI GCGC 1 cut(s) 702
GluI GCNGC 2 cut(s) 501, 999
GsuI CTGGAG 2 cut(s) 94, 915
HaeIII GGCC 1 cut(s) 542
HapII CCGG 1 cut(s) 658
HhaI GCGC 1 cut(s) 703
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 3 cut(s) 364, 1054, 1115
HpaII CCGG 1 cut(s) 658
Hpy166II GTNNAC 3 cut(s) 169, 514, 1270
Hpy188I TCNGA 7 cut(s) 36, 381, 761, 816, 1059, 1081, 1120
Hpy188III TCNNGA 7 cut(s) 434, 454, 805, 853, 1151, 1198, 1321
Hpy8I GTNNAC 3 cut(s) 169, 514, 1270
HpyAV CCTTC 6 cut(s) 113, 263, 352, 756, 1108, 1124
HpyCH4III ACNGT 2 cut(s) 450, 1252
HpyCH4V TGCA 6 cut(s) 416, 503, 594, 676, 956, 1001
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 6 cut(s) 220, 535, 683, 1050, 1068, 1078
HspAI GCGC 1 cut(s) 701
Kzo9I GATC 5 cut(s) 70, 756, 807, 1081, 1147
LguI GCTCTTC 1 cut(s) 1317
LmnI GCTCC 2 cut(s) 474, 601
Lsp1109I GCAGC 2 cut(s) 487, 985
LweI GCATC 3 cut(s) 265, 403, 1314
MabI ACCWGGT 1 cut(s) 860
MaeI CTAG 8 cut(s) 177, 239, 689, 704, 831, 930, 1088, 1214
MaeIII GTNAC 7 cut(s) 241, 563, 578, 823, 925, 964, 985
MalI GATC 5 cut(s) 72, 758, 809, 1083, 1149
MboI GATC 5 cut(s) 70, 756, 807, 1081, 1147
MhlI GDGCHC 1 cut(s) 874
MluCI AATT 9 cut(s) 84, 371, 457, 630, 693, 1173, 1245, 1299, 1338
MlyI GAGTC 2 cut(s) 358, 1048
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 6 cut(s) 112, 362, 378, 718, 1077, 1087
Mph1103I ATGCAT 1 cut(s) 596
MseI TTAA 3 cut(s) 407, 879, 1345
MslI CAYNNNNRTG 1 cut(s) 1014
MspA1I CMGCKG 1 cut(s) 1306
MspI CCGG 1 cut(s) 658
MspR9I CCNGG 2 cut(s) 641, 862
MvaI CCWGG 2 cut(s) 641, 862
MvnI CGCG 2 cut(s) 701, 842
MwoI GCNNNNNNNGC 1 cut(s) 357
NcoI CCATGG 1 cut(s) 63
NdeI CATATG 1 cut(s) 941
NdeII GATC 5 cut(s) 70, 756, 807, 1081, 1147
NlaIV GGNNCC 3 cut(s) 541, 1065, 1170
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 3 cut(s) 241, 578, 925
NsiI ATGCAT 1 cut(s) 596
NspI RCATGY 3 cut(s) 571, 598, 1013
PaeR7I CTCGAG 1 cut(s) 265
PagI TCATGA 2 cut(s) 433, 852
PciI ACATGT 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 1317
PcsI WCGNNNNNNNCGW 1 cut(s) 1143
PfeI GAWTC 1 cut(s) 1115
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 2 cut(s) 502, 1000
PleI GAGTC 2 cut(s) 358, 1048
PpsI GAGTC 2 cut(s) 358, 1048
PpuMI RGGWCCY 1 cut(s) 765
PscI ACATGT 1 cut(s) 567
PsiI TTATAA 1 cut(s) 779
Psp5II RGGWCCY 1 cut(s) 765
Psp6I CCWGG 2 cut(s) 639, 860
PspGI CCWGG 2 cut(s) 639, 860
PspN4I GGNNCC 3 cut(s) 541, 1065, 1170
PspPI GGNCC 5 cut(s) 169, 540, 624, 765, 864
PspPPI RGGWCCY 1 cut(s) 765
PspXI VCTCGAGB 1 cut(s) 265
PstI CTGCAG 1 cut(s) 505
PstNI CAGNNNCTG 1 cut(s) 1049
PvuII CAGCTG 1 cut(s) 1306
RsaI GTAC 3 cut(s) 234, 515, 572
RsaNI GTAC 3 cut(s) 233, 514, 571
RseI CAYNNNNRTG 1 cut(s) 1014
SapI GCTCTTC 1 cut(s) 1317
SaqAI TTAA 3 cut(s) 407, 879, 1345
SatI GCNGC 2 cut(s) 501, 999
Sau3AI GATC 5 cut(s) 70, 756, 807, 1081, 1147
Sau96I GGNCC 5 cut(s) 169, 540, 624, 765, 864
SchI GAGTC 2 cut(s) 358, 1048
ScrFI CCNGG 2 cut(s) 641, 862
SduI GDGCHC 1 cut(s) 874
SexAI ACCWGGT 1 cut(s) 860
SfaNI GCATC 3 cut(s) 265, 403, 1314
SfcI CTRYAG 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 265
SinI GGWCC 4 cut(s) 169, 624, 765, 864
SlaI CTCGAG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 1014
SmlI CTYRAG 3 cut(s) 125, 265, 574
SmoI CTYRAG 3 cut(s) 125, 265, 574
SpeI ACTAGT 2 cut(s) 238, 929
Sse9I AATT 9 cut(s) 84, 371, 457, 630, 693, 1173, 1245, 1299, 1338
SsiI CCGC 1 cut(s) 949
SspI AATATT 2 cut(s) 588, 1223
SspMI CTAG 8 cut(s) 177, 239, 689, 704, 831, 930, 1088, 1214
StyD4I CCNGG 2 cut(s) 639, 860
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 450, 1252
TaqI TCGA 2 cut(s) 266, 793
TasI AATT 9 cut(s) 84, 371, 457, 630, 693, 1173, 1245, 1299, 1338
TatI WGTACW 2 cut(s) 513, 570
TfiI GAWTC 1 cut(s) 1115
Tru1I TTAA 3 cut(s) 407, 879, 1345
Tru9I TTAA 3 cut(s) 407, 879, 1345
TscAI CASTG 2 cut(s) 874, 1257
TseFI GTSAC 3 cut(s) 241, 578, 925
TseI GCWGC 2 cut(s) 500, 998
Tsp45I GTSAC 3 cut(s) 241, 578, 925
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 2 cut(s) 874, 1257
Van91I CCANNNNNTGG 1 cut(s) 560
VpaK11BI GGWCC 4 cut(s) 169, 624, 765, 864
XapI RAATTY 4 cut(s) 371, 457, 693, 1299
XceI RCATGY 3 cut(s) 571, 598, 1013
XhoI CTCGAG 1 cut(s) 265
XspI CTAG 8 cut(s) 177, 239, 689, 704, 831, 930, 1088, 1214
Zsp2I ATGCAT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.