Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007624

Physical Location & Seq

Genomic Coordinates Reverse (-)

601243 .. 603443

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAAGATCAAACGCAACCTATTCTGCCAAAACAAAATTCTAACTCCGGCCATGAAGCACTTGAGTTTAAGAGCTTTATTCCGTGGCTTGAATGGGTCTTTGTGGATCAGTCTAGTATCTGGAGGACAGGTCTTTCATGGTCACTCTTCTTCGTCTTAGCCATCGGTGTACCACTAGTCTCGAACTTTCTTCTCTCCTGCCCGAGCTGTGATGCCAACCATAGCAGACCTTACCATGTTGTTTCTCAGCTTTCGCTTTCCTTGTTCGCGGGTCTCTCCTTCGTCAGCCTCTCCTTCTGGACTCGAAAATTCGGTCCGAGGAGGTTTCTCTTCCTTGACAAGCTATGTGATGCAAGTGAGAAAGTCCGTCAAGAATATAAGCAAATATTTCATAATTCAATGAAGCTCCTATGCTTCATTGTCTTCCCCTGTTTTGCTGCAGAGTGTGTGTACAAAATATGGTGGACAACGATTTTCTTCCTGGTGTGTGTTATGTTCCAGCTTATGTGCAGATGTCAAATAATAAGACTAGAAAGTTTCGCACAAATTTTTCAAAAGGATACCGAGGTGGAGACCATAATGATGGAACACAACAAGATCAGGAAGACCCTTCGGGTTATAAGCCATCGATTTCGAATGTTCATCTTGATCTCTCTGATCATGGTTACTGCGAGTCAGCTCGCCTCTCTTGTCACTGTAACCTGGTCGAGTGCTCATGTTGATATCTTCGAGGCAGGAGAACTCGCCTTATGTTCTATAAGCCTTATTACTAGTCTATTCATATGCTTGCGGAGTGCAACCAAATTAACACACAAAGCACAGTCAATTACCGGGCTTGCTGCAAAGTGGAATGTCTGTGCCACAATCCACATCCACTCTTTTGATTACGCAGAAACCGAGACTCCGATGATACCTCAGGTTTCCTTAGATCATCACGTGTTTCCTTTCGGTGCTGATTTGGAATCGGATGATGAAGAAGCGGACGAAGACGACGATCTGGACAATGGCAAGTTGGTGCCAGTTTTCAGAAACACAATCTCATTCCAGAAGAGACATGCTCTAGTGAAATATTTGGAGCATAATAGAGCGGGGATTACAGTGTTTGGGACCATGGTGGACAGAACATGGCTTCACTCTATTTTTGGAATTCAGCTGGCTCTTCTTCTATGGACGCTCAACAAGACAATTTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

399

Amino Acids

45.82

Weight (kDa)

6.73

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3537	PF12056	22 - 156	1.9e-44	Protein of unknown function (DUF3537)
DUF3537	PF12056	156 - 383	2.2e-86	Protein of unknown function (DUF3537)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03820 AT4G03820 AT4G03820 AT4G03820 AT4G22270 AT4G22270
fragaria_vesca	FvH4_3g01210 FvH4_3g01240 FvH4_3g01240 FvH4_3g01240
malus_domestica	MD10G1328800.v1.1
prunus_persica	Prupe.4G013300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0001771
rosa_laevigata	RLG00000030971
rosa_multiflora	Rmu_co8502563.1_g000001 Rmu_sc0008119.1_g000008 Rmu_ssc0000237.1_g000014
rosa_roxburghii	Rroxscaffold_1G00071230
rosa_rugosa	Rorug04G0392900
rosa_samantha	Rh5AG014200 Rh5BG017600 Rh5CG015300 Rh5DG015700
rosa_wichuraiana	Rw5G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	1015
AccBSI	CCGCTC	1 cut(s)	1088
AccII	CGCG	1 cut(s)	269
AciI	CCGC	4 cut(s)	269, 790, 980, 1088
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	4 cut(s)	37, 308, 546, 1146
AcvI	CACGTG	1 cut(s)	937
AfaI	GTAC	2 cut(s)	171, 452
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	3 cut(s)	92, 399, 554
AhlI	ACTAGT	2 cut(s)	175, 770
AjnI	CCWGG	2 cut(s)	480, 701
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	8 cut(s)	75, 207, 250, 343, 406, 502, 679, 1153
AluI	AGCT	8 cut(s)	75, 207, 250, 343, 406, 502, 679, 1153
Alw21I	GWGCWC	1 cut(s)	715
Alw26I	GTCTC	5 cut(s)	184, 278, 566, 893, 1045
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	437, 839
ApoI	RAATTY	4 cut(s)	37, 308, 546, 1146
ArsI	GACNNNNNNTTYG	2 cut(s)	298, 330
AspS9I	GGNCC	2 cut(s)	314, 1107
AsuC2I	CCSGG	1 cut(s)	832
AsuII	TTCGAA	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	314, 1107
AxyI	CCTNAGG	1 cut(s)	915
BaeI	ACNNNNGTAYC	2 cut(s)	552, 585
BanI	GGYRCC	1 cut(s)	1015
BbrPI	CACGTG	1 cut(s)	937
BbsI	GAAGAC	3 cut(s)	415, 611, 993
Bbv12I	GWGCWC	1 cut(s)	715
BbvI	GCAGC	2 cut(s)	424, 826
BccI	CCATC	3 cut(s)	170, 577, 633
BciT130I	CCWGG	2 cut(s)	482, 703
BciVI	GTATCC	1 cut(s)	553
BclI	TGATCA	1 cut(s)	657
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	5 cut(s)	184, 278, 566, 893, 1045
BcuI	ACTAGT	2 cut(s)	175, 770
BfaI	CTAG	5 cut(s)	114, 176, 530, 771, 1061
BfmI	CTRYAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	2 cut(s)	438, 840
BlsI	GCNGC	2 cut(s)	439, 841
Bme1390I	CCNGG	3 cut(s)	482, 703, 832
Bme18I	GGWCC	2 cut(s)	314, 1107
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	314, 1107
BmiI	GGNNCC	2 cut(s)	1017, 1108
BmrFI	CCNGG	3 cut(s)	482, 703, 832
BmsI	GCATC	2 cut(s)	202, 340
BpiI	GAAGAC	3 cut(s)	415, 611, 993
BplI	GAGNNNNNCTC	2 cut(s)	1042, 1074
BpmI	CTGGAG	1 cut(s)	142
Bpu14I	TTCGAA	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	937
BsaI	GGTCTC	2 cut(s)	278, 566
BsaJI	CCNNGG	4 cut(s)	83, 317, 564, 1110
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 886, 916
Bse1I	ACTGG	1 cut(s)	1019
Bse21I	CCTNAGG	1 cut(s)	915
BseBI	CCWGG	2 cut(s)	482, 703
BseCI	ATCGAT	1 cut(s)	628
BseDI	CCNNGG	4 cut(s)	83, 317, 564, 1110
BseGI	GGATG	2 cut(s)	870, 973
BseMII	CTCAG	2 cut(s)	260, 929
BseNI	ACTGG	1 cut(s)	1019
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	424, 826
BsgI	GTGCAG	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	1015
BshVI	ATCGAT	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	715
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	48, 831
BslFI	GGGAC	1 cut(s)	1120
BsmAI	GTCTC	5 cut(s)	184, 278, 566, 893, 1045
BsmFI	GGGAC	1 cut(s)	1120
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	2 cut(s)	278, 566
BsoBI	CYCGRG	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	634
Bsp1286I	GDGCHC	1 cut(s)	715
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	7 cut(s)	7, 106, 597, 648, 657, 928, 994
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	4 cut(s)	269, 790, 980, 1088
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	2 cut(s)	259, 928
BspDI	ATCGAT	1 cut(s)	628
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	1017, 1108
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	1164
BspT104I	TTCGAA	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	1015
BspTNI	GGTCTC	2 cut(s)	278, 566
BsrBI	CCGCTC	1 cut(s)	1088
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	1019
BssECI	CCNNGG	4 cut(s)	83, 317, 564, 1110
BssMI	GATC	7 cut(s)	7, 106, 597, 648, 657, 928, 994
BssT1I	CCWWGG	1 cut(s)	1110
Bst2UI	CCWGG	2 cut(s)	482, 703
Bst4CI	ACNGT	3 cut(s)	697, 822, 1099
Bst6I	CTCTTC	4 cut(s)	152, 335, 1043, 1164
BstAUI	TGTACA	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	937
BstBI	TTCGAA	1 cut(s)	634
BstC8I	GCNNGC	4 cut(s)	681, 788, 837, 1155
BstDEI	CTNAG	4 cut(s)	157, 246, 915, 925
BstDSI	CCRYGG	2 cut(s)	83, 1110
BstF5I	GGATG	2 cut(s)	870, 973
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	7 cut(s)	10, 109, 600, 651, 660, 931, 997
BstMAI	GTCTC	5 cut(s)	184, 278, 566, 893, 1045
BstMBI	GATC	7 cut(s)	7, 106, 597, 648, 657, 928, 994
BstNI	CCWGG	2 cut(s)	482, 703
BstNSI	RCATGY	1 cut(s)	1058
BstSCI	CCNGG	3 cut(s)	480, 701, 830
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	424, 826
BstV2I	GAAGAC	3 cut(s)	415, 611, 993
BstXI	CCANNNNNNTGG	1 cut(s)	583
Bsu15I	ATCGAT	1 cut(s)	628
Bsu36I	CCTNAGG	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	628
BtgI	CCRYGG	2 cut(s)	83, 1110
BtsCI	GGATG	2 cut(s)	870, 973
BtsIMutI	CAGTG	2 cut(s)	693, 1104
Cac8I	GCNNGC	4 cut(s)	681, 788, 837, 1155
Cfr13I	GGNCC	2 cut(s)	314, 1107
ClaI	ATCGAT	1 cut(s)	628
CpoI	CGGWCCG	1 cut(s)	314
CseI	GACGC	1 cut(s)	1180
CsiI	ACCWGGT	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	170, 451
CspI	CGGWCCG	1 cut(s)	314
CviAII	CATG	8 cut(s)	53, 138, 236, 661, 716, 1055, 1111, 1125
CviQI	GTAC	2 cut(s)	170, 451
DdeI	CTNAG	4 cut(s)	157, 246, 915, 925
DpnI	GATC	7 cut(s)	9, 108, 599, 650, 659, 930, 996
DpnII	GATC	7 cut(s)	7, 106, 597, 648, 657, 928, 994
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	4 cut(s)	152, 335, 1043, 1164
EarI	CTCTTC	4 cut(s)	152, 335, 1043, 1164
Eco130I	CCWWGG	1 cut(s)	1110
Eco31I	GGTCTC	2 cut(s)	278, 566
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	2 cut(s)	314, 1107
Eco72I	CACGTG	1 cut(s)	937
Eco81I	CCTNAGG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	1146
EcoRII	CCWGG	2 cut(s)	480, 701
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	1110
ErhI	CCWWGG	1 cut(s)	1110
FaeI	CATG	8 cut(s)	56, 141, 239, 664, 719, 1058, 1114, 1128
FaqI	GGGAC	1 cut(s)	1120
FatI	CATG	8 cut(s)	52, 137, 235, 660, 715, 1054, 1110, 1124
FauI	CCCGC	2 cut(s)	262, 1081
FauNDI	CATATG	1 cut(s)	782
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	2 cut(s)	438, 840
FokI	GGATG	2 cut(s)	857, 980
Fsp4HI	GCNGC	2 cut(s)	438, 840
FspBI	CTAG	5 cut(s)	114, 176, 530, 771, 1061
GluI	GCNGC	2 cut(s)	438, 840
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	2 cut(s)	48, 831
HgaI	GACGC	1 cut(s)	1180
Hin1II	CATG	8 cut(s)	56, 141, 239, 664, 719, 1058, 1114, 1128
HinfI	GANTC	4 cut(s)	301, 673, 901, 962
HpaII	CCGG	2 cut(s)	48, 831
Hpy166II	GTNNAC	4 cut(s)	170, 451, 465, 1117
Hpy188I	TCNGA	5 cut(s)	318, 657, 906, 967, 1028
Hpy188III	TCNNGA	8 cut(s)	121, 181, 298, 371, 601, 646, 998, 1045
Hpy8I	GTNNAC	4 cut(s)	170, 451, 465, 1117
Hpy99I	CGWCG	1 cut(s)	995
HpyAV	CCTTC	3 cut(s)	289, 304, 620
HpyCH4III	ACNGT	3 cut(s)	697, 822, 1099
HpyCH4IV	ACGT	1 cut(s)	936
HpyCH4V	TGCA	5 cut(s)	353, 440, 510, 797, 842
HpyF3I	CTNAG	4 cut(s)	157, 246, 915, 925
HpySE526I	ACGT	1 cut(s)	936
Hsp92II	CATG	8 cut(s)	56, 141, 239, 664, 719, 1058, 1114, 1128
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	7 cut(s)	7, 106, 597, 648, 657, 928, 994
LguI	GCTCTTC	1 cut(s)	1164
LmnI	GCTCC	2 cut(s)	411, 1075
Lsp1109I	GCAGC	2 cut(s)	424, 826
LweI	GCATC	2 cut(s)	202, 340
MabI	ACCWGGT	1 cut(s)	701
MaeI	CTAG	5 cut(s)	114, 176, 530, 771, 1061
MaeII	ACGT	1 cut(s)	936
MaeIII	GTNAC	4 cut(s)	141, 664, 691, 697
MalI	GATC	7 cut(s)	9, 108, 599, 650, 659, 930, 996
MbiI	CCGCTC	1 cut(s)	1088
MboI	GATC	7 cut(s)	7, 106, 597, 648, 657, 928, 994
MhlI	GDGCHC	1 cut(s)	715
MluCI	AATT	8 cut(s)	37, 308, 394, 546, 803, 825, 1146, 1185
MlyI	GAGTC	3 cut(s)	295, 682, 895
MnlI	CCTC	8 cut(s)	117, 299, 312, 315, 559, 694, 724, 924
MseI	TTAA	3 cut(s)	69, 806, 1195
MslI	CAYNNNNRTG	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	1153
MspI	CCGG	2 cut(s)	48, 831
MspR9I	CCNGG	3 cut(s)	482, 703, 832
MvaI	CCWGG	2 cut(s)	482, 703
MvnI	CGCG	1 cut(s)	269
NciI	CCSGG	1 cut(s)	832
NcoI	CCATGG	1 cut(s)	1110
NdeI	CATATG	1 cut(s)	782
NdeII	GATC	7 cut(s)	7, 106, 597, 648, 657, 928, 994
NlaIII	CATG	8 cut(s)	56, 141, 239, 664, 719, 1058, 1114, 1128
NlaIV	GGNNCC	2 cut(s)	1017, 1108
NmuCI	GTSAC	2 cut(s)	141, 691
NspI	RCATGY	1 cut(s)	1058
NspV	TTCGAA	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	1164
PcsI	WCGNNNNNNNCGW	2 cut(s)	894, 990
PfeI	GAWTC	1 cut(s)	962
PkrI	GCNGC	2 cut(s)	439, 841
PleI	GAGTC	3 cut(s)	295, 681, 895
PmaCI	CACGTG	1 cut(s)	937
PmlI	CACGTG	1 cut(s)	937
PpsI	GAGTC	3 cut(s)	295, 681, 895
Ppu21I	YACGTR	1 cut(s)	937
PsiI	TTATAA	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	480, 701
PspCI	CACGTG	1 cut(s)	937
PspGI	CCWGG	2 cut(s)	480, 701
PspN4I	GGNNCC	2 cut(s)	1017, 1108
PspPI	GGNCC	2 cut(s)	314, 1107
PstI	CTGCAG	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	1153
RsaI	GTAC	2 cut(s)	171, 452
RsaNI	GTAC	2 cut(s)	170, 451
RseI	CAYNNNNRTG	1 cut(s)	581
Rsr2I	CGGWCCG	1 cut(s)	314
RsrII	CGGWCCG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	1164
SaqAI	TTAA	3 cut(s)	69, 806, 1195
SatI	GCNGC	2 cut(s)	438, 840
Sau3AI	GATC	7 cut(s)	7, 106, 597, 648, 657, 928, 994
Sau96I	GGNCC	2 cut(s)	314, 1107
SchI	GAGTC	3 cut(s)	295, 682, 895
ScrFI	CCNGG	3 cut(s)	482, 703, 832
SduI	GDGCHC	1 cut(s)	715
SexAI	ACCWGGT	1 cut(s)	701
SfaNI	GCATC	2 cut(s)	202, 340
SfcI	CTRYAG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	634
SinI	GGWCC	2 cut(s)	314, 1107
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SpeI	ACTAGT	2 cut(s)	175, 770
Sse9I	AATT	8 cut(s)	37, 308, 394, 546, 803, 825, 1146, 1185
SsiI	CCGC	4 cut(s)	269, 790, 980, 1088
SspI	AATATT	2 cut(s)	387, 1070
SspMI	CTAG	5 cut(s)	114, 176, 530, 771, 1061
StyD4I	CCNGG	3 cut(s)	480, 701, 830
StyI	CCWWGG	1 cut(s)	1110
TaaI	ACNGT	3 cut(s)	697, 822, 1099
TaiI	ACGT	1 cut(s)	939
TaqI	TCGA	6 cut(s)	182, 304, 628, 634, 707, 729
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	8 cut(s)	37, 308, 394, 546, 803, 825, 1146, 1185
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	962
Tru1I	TTAA	3 cut(s)	69, 806, 1195
Tru9I	TTAA	3 cut(s)	69, 806, 1195
TscAI	CASTG	2 cut(s)	700, 1104
TseFI	GTSAC	2 cut(s)	141, 691
TseI	GCWGC	2 cut(s)	437, 839
Tsp45I	GTSAC	2 cut(s)	141, 691
TspDTI	ATGAA	8 cut(s)	69, 126, 380, 406, 416, 631, 769, 987
TspGWI	ACGGA	3 cut(s)	72, 356, 1181
TspRI	CASTG	2 cut(s)	700, 1104
VpaK11BI	GGWCC	2 cut(s)	314, 1107
XapI	RAATTY	4 cut(s)	37, 308, 546, 1146
XceI	RCATGY	1 cut(s)	1058
XspI	CTAG	5 cut(s)	114, 176, 530, 771, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.