Rh5BG017600

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007624
Physical Location & Seq
Reverse (-)
1283716 .. 1286352
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG017600.1

Sequence Viewer

Length: 1284 bp
ATGGAAGATCAAAGCCATCCAATTCTGCCAAAACAAAACTCTATCTCCAGCCATGAAGGACTTGACTTGCCGAGCTTTGGTTCGTGCCTGAAATGGGTCTTTGTGGACCAGTCTAGTATATGGAGAACTGGTCTTTCATGGTCAATCTTCTTCGTCTTAGCCATTGGCGTACCACTAGTCACTCACTTCCTTCTCTCCTGCTCGAGCTGTGATGCGAACCATAGCAGACCTTACCATGTTGTTTCCCAGATTTCGCTTTCCTTGTTCGCAATGCTCTCCTTCATTAGCCTCTCCTGCTGGACTCGTAAATTTGGTCTGAAGAGGTTTCTCTTCCTTGACAAGTTAAGTGATGCAAGTGAGAAAGTCCGTCATGAATATAAGCAACAGTTTCAGAATTCAATGAAGCTCCTATGCTTGATTGTCTTCCCCTGTTTTGCTGCAGAGTGTGTGTACAAAATCTGGTGGTATGTCTCAGGGGCCACAGAACTACCATACTATGGTAACATGTACTTGAGTGACACAATATTATGCATGTTGGAGCTGTGTTCATGGCTTTATAGGACCACAATTTTCTTCCTGGTGTGTGTTCTGTTCCGGCTCATTTGCCATCTGCAAATACTAAGACTAGAAATTTACGCGCAAGTTTTTCAAAAGGAAACCGAGGTGGAGACAATAATGATGGAACACAACAAGATCAGAAGGACCTTTAGGATTATAAGCCACCGGTTTCGAGCGTTCATCTTGGTCTCTCTGATTATGGTTACAGCTAGTCAGCTCGCCTTTCTTGTCATGATAACCAGGGCCAGTGCTCATGTTAATATCTACAACGCTGGAGAACTCGCTTTATGTTCTATAAGCCTTGTGACTAGTCTATTCATATGTTTGCGGAGTGCAACCAAAGTAACACATAAAGCACAGAAAGTTACTGGGCTTGCTGCAAAGTGGCATGTCTGTGCCACAATCCACTCTTTTGATTACTCAGAAACTGAGACTCCGATGGTGCCTCAGGTTTCCTCAGATCATCAAGTGTTTCCCTTCGGTGCTGATTTGGAATCAGATGATGAAGAAGGGGACGAAGAAGACGATCTTGACAACACCAAGTTGGTGCCAATTTTCACAAACACAATCTCATTCCAGAAGAGACAAGCTCTAGTGAAATATTTAGAGCATAATAGAGCAGGAATTACAGTGTTTGGGTTCATGGTGGACAGAACATGGCTTCACTCTATTTTTGGAATTCAGCTGGCTCTTCTTCTCTGGATGCTCAACAAGACAATTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

427

Amino Acids

49.05

Weight (kDa)

6.95

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 23 - 413 1e-163 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AccB1I GGYRCC 2 cut(s) 1000, 1105
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 1 cut(s) 638
AciI CCGC 1 cut(s) 886
AcsI RAATTY 4 cut(s) 308, 394, 630, 1236
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 3 cut(s) 171, 452, 509
AfiI CCNNNNNNNGG 3 cut(s) 77, 94, 497
AflIII ACRYGT 1 cut(s) 504
AgeI ACCGGT 1 cut(s) 723
AgsI TTSAA 2 cut(s) 399, 650
AhlI ACTAGT 2 cut(s) 175, 866
AjnI CCWGG 2 cut(s) 576, 797
AluBI AGCT 8 cut(s) 75, 207, 406, 541, 767, 775, 1148, 1243
AluI AGCT 8 cut(s) 75, 207, 406, 541, 767, 775, 1148, 1243
Alw21I GWGCWC 1 cut(s) 811
Alw26I GTCTC 5 cut(s) 475, 662, 751, 983, 1135
AlwNI CAGNNNCTG 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 2 cut(s) 477, 801
ApeKI GCWGC 2 cut(s) 437, 935
ApoI RAATTY 4 cut(s) 308, 394, 630, 1236
AsiGI ACCGGT 1 cut(s) 723
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 5 cut(s) 106, 477, 561, 702, 801
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 3 cut(s) 106, 561, 702
AxyI CCTNAGG 1 cut(s) 1005
BanI GGYRCC 2 cut(s) 1000, 1105
BbsI GAAGAC 2 cut(s) 415, 1086
Bbv12I GWGCWC 1 cut(s) 811
BbvI GCAGC 2 cut(s) 424, 922
BccI CCATC 4 cut(s) 24, 615, 673, 991
BciT130I CCWGG 2 cut(s) 578, 799
BcoDI GTCTC 5 cut(s) 475, 662, 751, 983, 1135
BcuI ACTAGT 2 cut(s) 175, 866
BfaI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 2 cut(s) 438, 936
BlsI GCNGC 2 cut(s) 439, 937
Bme1390I CCNGG 2 cut(s) 578, 799
Bme18I GGWCC 3 cut(s) 106, 561, 702
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 5 cut(s) 106, 477, 561, 702, 801
BmiI GGNNCC 3 cut(s) 478, 1002, 1107
BmrFI CCNGG 2 cut(s) 578, 799
BmrI ACTGGG 1 cut(s) 936
BmsI GCATC 3 cut(s) 202, 340, 1251
BmuI ACTGGG 1 cut(s) 936
BpiI GAAGAC 2 cut(s) 415, 1086
BplI GAGNNNNNCTC 2 cut(s) 1132, 1164
BpmI CTGGAG 2 cut(s) 31, 852
BpuEI CTTGAG 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 751
BsaJI CCNNGG 2 cut(s) 660, 798
BsaWI WCCGGW 1 cut(s) 723
BsaXI ACNNNNNCTCC 6 cut(s) 29, 59, 115, 145, 976, 1006
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 94, 497
Bse118I RCCGGY 1 cut(s) 723
Bse1I ACTGG 4 cut(s) 109, 133, 804, 931
Bse21I CCTNAGG 1 cut(s) 1005
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 578, 799
BseDI CCNNGG 2 cut(s) 660, 798
BseGI GGATG 2 cut(s) 16, 1266
BseLI CCNNNNNNNGG 3 cut(s) 77, 94, 497
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 5 cut(s) 486, 978, 993, 1019, 1029
BseNI ACTGG 4 cut(s) 109, 133, 804, 931
BseXI GCAGC 2 cut(s) 424, 922
Bsh1236I CGCG 1 cut(s) 638
BshFI GGCC 2 cut(s) 479, 803
BshNI GGYRCC 2 cut(s) 1000, 1105
BshTI ACCGGT 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 811
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 595, 724
BslFI GGGAC 1 cut(s) 1085
BslI CCNNNNNNNGG 3 cut(s) 77, 94, 497
BsmAI GTCTC 5 cut(s) 475, 662, 751, 983, 1135
BsmFI GGGAC 1 cut(s) 1085
BsnI GGCC 2 cut(s) 479, 803
Bso31I GGTCTC 1 cut(s) 751
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 811
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 4 cut(s) 7, 693, 1018, 1084
BspACI CCGC 1 cut(s) 886
BspANI GGCC 2 cut(s) 479, 803
BspCNI CTCAG 5 cut(s) 485, 979, 992, 1018, 1028
BspFNI CGCG 1 cut(s) 638
BspHI TCATGA 2 cut(s) 370, 789
BspLI GGNNCC 3 cut(s) 478, 1002, 1107
BspMAI CTGCAG 1 cut(s) 442
BspQI GCTCTTC 1 cut(s) 1254
BspT107I GGYRCC 2 cut(s) 1000, 1105
BspTNI GGTCTC 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 4 cut(s) 109, 133, 804, 931
BssAI RCCGGY 1 cut(s) 723
BssECI CCNNGG 2 cut(s) 660, 798
BssMI GATC 4 cut(s) 7, 693, 1018, 1084
Bst2UI CCWGG 2 cut(s) 578, 799
Bst4CI ACNGT 2 cut(s) 387, 1189
Bst6I CTCTTC 4 cut(s) 314, 335, 1133, 1254
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 777, 933, 1245
BstDEI CTNAG 7 cut(s) 157, 472, 620, 979, 987, 1005, 1015
BstF5I GGATG 2 cut(s) 16, 1266
BstFNI CGCG 1 cut(s) 638
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 4 cut(s) 10, 696, 1021, 1087
BstMAI GTCTC 5 cut(s) 475, 662, 751, 983, 1135
BstMBI GATC 4 cut(s) 7, 693, 1018, 1084
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNI CCWGG 2 cut(s) 578, 799
BstNSI RCATGY 3 cut(s) 508, 535, 950
BstSCI CCNGG 2 cut(s) 576, 797
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 638
BstV1I GCAGC 2 cut(s) 424, 922
BstV2I GAAGAC 2 cut(s) 415, 1086
Bsu36I CCTNAGG 1 cut(s) 1005
BsuRI GGCC 2 cut(s) 479, 803
BtsCI GGATG 2 cut(s) 16, 1266
BtsIMutI CAGTG 2 cut(s) 811, 1194
Cac8I GCNNGC 3 cut(s) 777, 933, 1245
CaiI CAGNNNCTG 1 cut(s) 986
CciI TCATGA 2 cut(s) 370, 789
CfoI GCGC 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 723
Cfr13I GGNCC 5 cut(s) 106, 477, 561, 702, 801
Csp6I GTAC 3 cut(s) 170, 451, 508
CspAI ACCGGT 1 cut(s) 723
CviQI GTAC 3 cut(s) 170, 451, 508
DdeI CTNAG 7 cut(s) 157, 472, 620, 979, 987, 1005, 1015
DpnI GATC 4 cut(s) 9, 695, 1020, 1086
DpnII GATC 4 cut(s) 7, 693, 1018, 1084
Eam1104I CTCTTC 4 cut(s) 314, 335, 1133, 1254
EarI CTCTTC 4 cut(s) 314, 335, 1133, 1254
Eco31I GGTCTC 1 cut(s) 751
Eco47I GGWCC 3 cut(s) 106, 561, 702
Eco57I CTGAAG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 1005
Eco88I CYCGRG 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 702
EcoRI GAATTC 2 cut(s) 394, 1236
EcoRII CCWGG 2 cut(s) 576, 797
EcoT22I ATGCAT 1 cut(s) 533
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FaqI GGGAC 1 cut(s) 1085
FauNDI CATATG 1 cut(s) 878
Fnu4HI GCNGC 2 cut(s) 438, 936
FokI GGATG 2 cut(s) 3, 1273
Fsp4HI GCNGC 2 cut(s) 438, 936
FspBI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
GlaI GCGC 1 cut(s) 639
GluI GCNGC 2 cut(s) 438, 936
GsuI CTGGAG 2 cut(s) 31, 852
HaeIII GGCC 2 cut(s) 479, 803
HapII CCGG 2 cut(s) 595, 724
HhaI GCGC 1 cut(s) 640
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HinfI GANTC 3 cut(s) 301, 991, 1052
HpaII CCGG 2 cut(s) 595, 724
Hpy166II GTNNAC 3 cut(s) 106, 451, 1207
Hpy188I TCNGA 8 cut(s) 318, 393, 698, 753, 982, 996, 1018, 1057
Hpy188III TCNNGA 5 cut(s) 371, 790, 1088, 1135, 1258
Hpy8I GTNNAC 3 cut(s) 106, 451, 1207
HpyAV CCTTC 6 cut(s) 50, 200, 289, 693, 1045, 1061
HpyCH4III ACNGT 2 cut(s) 387, 1189
HpyCH4V TGCA 6 cut(s) 353, 440, 531, 613, 893, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 7 cut(s) 157, 472, 620, 979, 987, 1005, 1015
HspAI GCGC 1 cut(s) 638
Kzo9I GATC 4 cut(s) 7, 693, 1018, 1084
LguI GCTCTTC 1 cut(s) 1254
LmnI GCTCC 2 cut(s) 411, 538
Lsp1109I GCAGC 2 cut(s) 424, 922
LweI GCATC 3 cut(s) 202, 340, 1251
MaeI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
MaeIII GTNAC 7 cut(s) 178, 500, 515, 760, 862, 901, 922
MalI GATC 4 cut(s) 9, 695, 1020, 1086
MboI GATC 4 cut(s) 7, 693, 1018, 1084
MhlI GDGCHC 1 cut(s) 811
MluCI AATT 9 cut(s) 21, 308, 394, 567, 630, 1110, 1182, 1236, 1275
MlyI GAGTC 2 cut(s) 295, 985
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 5 cut(s) 299, 315, 655, 1014, 1024
Mph1103I ATGCAT 1 cut(s) 533
MseI TTAA 3 cut(s) 344, 816, 1282
MslI CAYNNNNRTG 1 cut(s) 951
MspA1I CMGCKG 1 cut(s) 1243
MspI CCGG 2 cut(s) 595, 724
MspR9I CCNGG 2 cut(s) 578, 799
MvaI CCWGG 2 cut(s) 578, 799
MvnI CGCG 1 cut(s) 638
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeI CATATG 1 cut(s) 878
NdeII GATC 4 cut(s) 7, 693, 1018, 1084
NlaIV GGNNCC 3 cut(s) 478, 1002, 1107
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 3 cut(s) 178, 515, 862
NsiI ATGCAT 1 cut(s) 533
NspI RCATGY 3 cut(s) 508, 535, 950
PaeR7I CTCGAG 1 cut(s) 202
PagI TCATGA 2 cut(s) 370, 789
PciI ACATGT 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 1254
PcsI WCGNNNNNNNCGW 1 cut(s) 1080
PfeI GAWTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 497
PinAI ACCGGT 1 cut(s) 723
PkrI GCNGC 2 cut(s) 439, 937
PleI GAGTC 2 cut(s) 295, 985
PpsI GAGTC 2 cut(s) 295, 985
PpuMI RGGWCCY 1 cut(s) 702
PscI ACATGT 1 cut(s) 504
PsiI TTATAA 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 576, 797
PspGI CCWGG 2 cut(s) 576, 797
PspN4I GGNNCC 3 cut(s) 478, 1002, 1107
PspPI GGNCC 5 cut(s) 106, 477, 561, 702, 801
PspPPI RGGWCCY 1 cut(s) 702
PspXI VCTCGAGB 1 cut(s) 202
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 986
PvuII CAGCTG 1 cut(s) 1243
RsaI GTAC 3 cut(s) 171, 452, 509
RsaNI GTAC 3 cut(s) 170, 451, 508
RseI CAYNNNNRTG 1 cut(s) 951
SapI GCTCTTC 1 cut(s) 1254
SaqAI TTAA 3 cut(s) 344, 816, 1282
SatI GCNGC 2 cut(s) 438, 936
Sau3AI GATC 4 cut(s) 7, 693, 1018, 1084
Sau96I GGNCC 5 cut(s) 106, 477, 561, 702, 801
SchI GAGTC 2 cut(s) 295, 985
ScrFI CCNGG 2 cut(s) 578, 799
SduI GDGCHC 1 cut(s) 811
SfaNI GCATC 3 cut(s) 202, 340, 1251
SfcI CTRYAG 1 cut(s) 438
Sfr274I CTCGAG 1 cut(s) 202
SinI GGWCC 3 cut(s) 106, 561, 702
SlaI CTCGAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 951
SmlI CTYRAG 2 cut(s) 202, 511
SmoI CTYRAG 2 cut(s) 202, 511
SpeI ACTAGT 2 cut(s) 175, 866
Sse9I AATT 9 cut(s) 21, 308, 394, 567, 630, 1110, 1182, 1236, 1275
SsiI CCGC 1 cut(s) 886
SspI AATATT 2 cut(s) 525, 1160
SspMI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
StyD4I CCNGG 2 cut(s) 576, 797
TaaI ACNGT 2 cut(s) 387, 1189
TaqI TCGA 2 cut(s) 203, 730
TasI AATT 9 cut(s) 21, 308, 394, 567, 630, 1110, 1182, 1236, 1275
TatI WGTACW 2 cut(s) 450, 507
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 3 cut(s) 344, 816, 1282
Tru9I TTAA 3 cut(s) 344, 816, 1282
TscAI CASTG 2 cut(s) 811, 1194
TseFI GTSAC 3 cut(s) 178, 515, 862
TseI GCWGC 2 cut(s) 437, 935
Tsp45I GTSAC 3 cut(s) 178, 515, 862
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 2 cut(s) 811, 1194
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 3 cut(s) 106, 561, 702
XapI RAATTY 4 cut(s) 308, 394, 630, 1236
XceI RCATGY 3 cut(s) 508, 535, 950
XhoI CTCGAG 1 cut(s) 202
XspI CTAG 6 cut(s) 114, 176, 626, 768, 867, 1151
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.