Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007624

Physical Location & Seq

Genomic Coordinates Reverse (-)

92114793 .. 92116595

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGATCAAAGCCATCCAATTCTGCCAAAACAGAACTCTATCTCCAGCCATGAAGGACTTGAGTTGCCGAGCTTTGGTTCGTGCCTGAAATGGGTCTTTGTGGACCAGTCTAGTATATGGAGAACTGGTCTTTCATGGTCAATCTTCTTCGTCTTAGCCATTGGCGTACCACTAGTCACTCACTTCCTTCTCTCCTGCTCGAGCTGTGATGCGAACCATAGCAGACCTTACCATGTTGTTTCCCAGATTTCGCTTTCCTTGTTCGCAATGCTCTCCTTCATTAGCCTCTCCTGCTGGACTCGTAAATTTGGTCTGAAGAGGTTTCTCTTCCTTGACAAGTTAATTGATGCAAGTGAGAAAGTCCGTCAAGAATATAAGCAACAGTTTCAGAATTCAATGAAGCTCCTATGCTTGATTGTCTTCCCCTGTTTTGCTGCAGAGTGTGTGTACAAAATCTGGTGTCAGCTCGTGTTTCTTGTCATGATAACCAGGTCCAGTGCTCATGTTAATATCTTCAAGGCTGGGGAACTCGCTTTATGTTCTATAAGCCTTGTGACTAGTCTATTCATATGTTTGCGGAGTGCAACCAAAGTAACACATAAAGCACAGAAAGTTACTGGGCTTGCTGCAAAGTGGCATGTCTGTGCCACAATCCACTCTTTTGATTACGCAGAAACTGAGACTCCGATGGTGCCTCAGGTTTCCTCAGATCATCAAGTGTTTCCCTTCGGTGCTGATTTGGAATCAGATGATGAAGAAGGGGACGAAGAAGACGATCTTGACAACACCAAGTTGGTGCCAATTTTCACAAACGCAATCTCATTCCAGAAGAGACAAGCTCTAGTGAAATATTTAGAGCATAATAGAGCAGGAATTACAGTGTTTGGGTTCATGGTGGACAGAACATGGCTTCACTCTATTTTTGGAATTCAGCTGGCTCTTCTTCTCTGGATGCTCAACAAGACAATTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

325

Amino Acids

36.83

Weight (kDa)

6.63

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3537	PF12056	22 - 155	9.3e-47	Protein of unknown function (DUF3537)
DUF3537	PF12056	156 - 311	4.3e-59	Protein of unknown function (DUF3537)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03820 AT4G03820 AT4G03820 AT4G03820 AT4G22270 AT4G22270
fragaria_vesca	FvH4_3g01210 FvH4_3g01240 FvH4_3g01240 FvH4_3g01240
malus_domestica	MD10G1328800.v1.1
prunus_persica	Prupe.4G013300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0001771
rosa_laevigata	RLG00000030971
rosa_multiflora	Rmu_co8502563.1_g000001 Rmu_sc0008119.1_g000008 Rmu_ssc0000237.1_g000014
rosa_roxburghii	Rroxscaffold_1G00071230
rosa_rugosa	Rorug04G0392900
rosa_samantha	Rh5AG014200 Rh5BG017600 Rh5CG015300 Rh5DG015700
rosa_wichuraiana	Rw5G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	694, 799
AciI	CCGC	1 cut(s)	580
AcsI	RAATTY	3 cut(s)	308, 394, 930
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	171, 452
AfiI	CCNNNNNNNGG	2 cut(s)	77, 94
AgsI	TTSAA	2 cut(s)	399, 520
AhlI	ACTAGT	2 cut(s)	175, 560
AjnI	CCWGG	1 cut(s)	491
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	6 cut(s)	75, 207, 406, 469, 842, 937
AluI	AGCT	6 cut(s)	75, 207, 406, 469, 842, 937
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	2 cut(s)	677, 829
AlwNI	CAGNNNCTG	1 cut(s)	680
Ama87I	CYCGRG	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	437, 629
ApoI	RAATTY	3 cut(s)	308, 394, 930
AspS9I	GGNCC	2 cut(s)	106, 495
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	106, 495
AxyI	CCTNAGG	1 cut(s)	699
BanI	GGYRCC	2 cut(s)	694, 799
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	2 cut(s)	415, 780
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	424, 616
BccI	CCATC	2 cut(s)	24, 685
BciT130I	CCWGG	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	677, 829
BcuI	ACTAGT	2 cut(s)	175, 560
BfaI	CTAG	4 cut(s)	114, 176, 561, 845
BfmI	CTRYAG	1 cut(s)	438
BisI	GCNGC	2 cut(s)	438, 630
BlsI	GCNGC	2 cut(s)	439, 631
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	2 cut(s)	106, 495
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	106, 495
BmiI	GGNNCC	2 cut(s)	696, 801
BmrFI	CCNGG	1 cut(s)	493
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	3 cut(s)	202, 340, 945
BmuI	ACTGGG	1 cut(s)	630
BpiI	GAAGAC	2 cut(s)	415, 780
BplI	GAGNNNNNCTC	2 cut(s)	826, 858
BpmI	CTGGAG	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 115, 145, 670, 700
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 94
Bse1I	ACTGG	4 cut(s)	109, 133, 498, 625
Bse21I	CCTNAGG	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	493
BseGI	GGATG	2 cut(s)	16, 960
BseLI	CCNNNNNNNGG	2 cut(s)	77, 94
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	672, 713, 723
BseNI	ACTGG	4 cut(s)	109, 133, 498, 625
BseXI	GCAGC	2 cut(s)	424, 616
BseYI	CCCAGC	1 cut(s)	524
BshNI	GGYRCC	2 cut(s)	694, 799
BsiHKAI	GWGCWC	1 cut(s)	505
BsiHKCI	CYCGRG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	2 cut(s)	77, 94
BsmAI	GTCTC	2 cut(s)	677, 829
BsmFI	GGGAC	1 cut(s)	779
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	7, 712, 778
BspACI	CCGC	1 cut(s)	580
BspCNI	CTCAG	3 cut(s)	673, 712, 722
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	696, 801
BspMAI	CTGCAG	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	948
BspT107I	GGYRCC	2 cut(s)	694, 799
BsrDI	GCAATG	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	4 cut(s)	109, 133, 498, 625
BssMI	GATC	3 cut(s)	7, 712, 778
BssSI	CACGAG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	2 cut(s)	387, 883
Bst6I	CTCTTC	4 cut(s)	314, 335, 827, 948
BstAUI	TGTACA	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	627, 939
BstDEI	CTNAG	4 cut(s)	157, 681, 699, 709
BstF5I	GGATG	2 cut(s)	16, 960
BstKTI	GATC	3 cut(s)	10, 715, 781
BstMAI	GTCTC	2 cut(s)	677, 829
BstMBI	GATC	3 cut(s)	7, 712, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	424, 616
BstV2I	GAAGAC	2 cut(s)	415, 780
Bsu36I	CCTNAGG	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	16, 960
BtsIMutI	CAGTG	2 cut(s)	505, 888
Cac8I	GCNNGC	2 cut(s)	627, 939
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	106, 495
CsiI	ACCWGGT	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	170, 451
CviAII	CATG	8 cut(s)	53, 138, 236, 484, 506, 641, 895, 909
CviQI	GTAC	2 cut(s)	170, 451
DdeI	CTNAG	4 cut(s)	157, 681, 699, 709
DpnI	GATC	3 cut(s)	9, 714, 780
DpnII	GATC	3 cut(s)	7, 712, 778
Eam1104I	CTCTTC	4 cut(s)	314, 335, 827, 948
EarI	CTCTTC	4 cut(s)	314, 335, 827, 948
Eco47I	GGWCC	2 cut(s)	106, 495
Eco57I	CTGAAG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	699
Eco88I	CYCGRG	1 cut(s)	202
EcoRI	GAATTC	2 cut(s)	394, 930
EcoRII	CCWGG	1 cut(s)	491
FaeI	CATG	8 cut(s)	56, 141, 239, 487, 509, 644, 898, 912
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	8 cut(s)	52, 137, 235, 483, 505, 640, 894, 908
FauNDI	CATATG	1 cut(s)	572
Fnu4HI	GCNGC	2 cut(s)	438, 630
FokI	GGATG	2 cut(s)	3, 967
Fsp4HI	GCNGC	2 cut(s)	438, 630
FspBI	CTAG	4 cut(s)	114, 176, 561, 845
GluI	GCNGC	2 cut(s)	438, 630
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	31
Hin1II	CATG	8 cut(s)	56, 141, 239, 487, 509, 644, 898, 912
HinfI	GANTC	3 cut(s)	301, 685, 746
Hpy166II	GTNNAC	3 cut(s)	106, 451, 901
Hpy188I	TCNGA	5 cut(s)	318, 393, 690, 712, 751
Hpy188III	TCNNGA	5 cut(s)	371, 484, 782, 829, 952
Hpy8I	GTNNAC	3 cut(s)	106, 451, 901
HpyAV	CCTTC	5 cut(s)	50, 200, 289, 739, 755
HpyCH4III	ACNGT	2 cut(s)	387, 883
HpyCH4V	TGCA	4 cut(s)	353, 440, 587, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	4 cut(s)	157, 681, 699, 709
Hsp92II	CATG	8 cut(s)	56, 141, 239, 487, 509, 644, 898, 912
Kzo9I	GATC	3 cut(s)	7, 712, 778
LguI	GCTCTTC	1 cut(s)	948
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	2 cut(s)	424, 616
LweI	GCATC	3 cut(s)	202, 340, 945
MabI	ACCWGGT	1 cut(s)	491
MaeI	CTAG	4 cut(s)	114, 176, 561, 845
MaeIII	GTNAC	4 cut(s)	178, 556, 595, 616
MalI	GATC	3 cut(s)	9, 714, 780
MboI	GATC	3 cut(s)	7, 712, 778
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	8 cut(s)	21, 308, 345, 394, 804, 876, 930, 969
MlyI	GAGTC	2 cut(s)	295, 679
MnlI	CCTC	4 cut(s)	299, 315, 708, 718
MseI	TTAA	3 cut(s)	344, 510, 976
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	937
MspR9I	CCNGG	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeI	CATATG	1 cut(s)	572
NdeII	GATC	3 cut(s)	7, 712, 778
NlaIII	CATG	8 cut(s)	56, 141, 239, 487, 509, 644, 898, 912
NlaIV	GGNNCC	2 cut(s)	696, 801
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	178, 556
NspI	RCATGY	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	202
PagI	TCATGA	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	948
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	746
PkrI	GCNGC	2 cut(s)	439, 631
PleI	GAGTC	2 cut(s)	295, 679
PpsI	GAGTC	2 cut(s)	295, 679
Psp6I	CCWGG	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	696, 801
PspPI	GGNCC	2 cut(s)	106, 495
PspXI	VCTCGAGB	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	937
RsaI	GTAC	2 cut(s)	171, 452
RsaNI	GTAC	2 cut(s)	170, 451
RseI	CAYNNNNRTG	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	948
SaqAI	TTAA	3 cut(s)	344, 510, 976
SatI	GCNGC	2 cut(s)	438, 630
Sau3AI	GATC	3 cut(s)	7, 712, 778
Sau96I	GGNCC	2 cut(s)	106, 495
SchI	GAGTC	2 cut(s)	295, 679
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	505
SexAI	ACCWGGT	1 cut(s)	491
SfaNI	GCATC	3 cut(s)	202, 340, 945
SfcI	CTRYAG	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	106, 495
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	2 cut(s)	62, 202
SmoI	CTYRAG	2 cut(s)	62, 202
SpeI	ACTAGT	2 cut(s)	175, 560
Sse9I	AATT	8 cut(s)	21, 308, 345, 394, 804, 876, 930, 969
SsiI	CCGC	1 cut(s)	580
SspI	AATATT	1 cut(s)	854
SspMI	CTAG	4 cut(s)	114, 176, 561, 845
StyD4I	CCNGG	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	387, 883
TaqI	TCGA	1 cut(s)	203
TasI	AATT	8 cut(s)	21, 308, 345, 394, 804, 876, 930, 969
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	3 cut(s)	344, 510, 976
Tru9I	TTAA	3 cut(s)	344, 510, 976
TscAI	CASTG	2 cut(s)	505, 888
TseFI	GTSAC	2 cut(s)	178, 556
TseI	GCWGC	2 cut(s)	437, 629
Tsp45I	GTSAC	2 cut(s)	178, 556
TspDTI	ATGAA	7 cut(s)	69, 126, 271, 416, 559, 771, 883
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	2 cut(s)	505, 888
VpaK11BI	GGWCC	2 cut(s)	106, 495
XapI	RAATTY	3 cut(s)	308, 394, 930
XceI	RCATGY	1 cut(s)	644
XhoI	CTCGAG	1 cut(s)	202
XspI	CTAG	4 cut(s)	114, 176, 561, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.