Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007624

Physical Location & Seq

Genomic Coordinates Reverse (-)

620788 .. 622962

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G013300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGAAGACGAAAGGCAATCATTTCTATCAAAAGACAGAGCAATCTCAGGCTACATAGCCCACGAAGGACTTGAATTGAAGAACTTCGATGCATGCCTCAAATGGGTTTTCGTGGATCAGTCCAATGTATGGAGGACTGGTATTTCATGGTCCATCTTCTTCGTTTTAGCCATTGGCGTGCCGCTTGTCTCACACTTTCTCCTCTCCTGCTCCGACTGCGATGAAAATCACAGCAGGCCTTACCATGTAGTTTCTCAGTTATCACTTTCTTTATTCTCAGTGCTCGCATTCATCAGCCTCTCCTGCTGGACCCGCAAATATGGTTTGAGGAGGTTTCTCTTCCTTGACAAATTATATGACGCAAGTGAGAAGGTCCGCCATGGATATAAACAACAGTTTCAGAATTCATTGAAGCTCCTCTGCATGATCGTGTTCCCCTGTTTTGCGGCAGAGTGTCTCTACAAGATATGGTGGTATGTCTCGGGAGCAACCGAATTACCGTATTATGGGAACATCTATTTAAGCAACACGATTTTGTGTACGTTGGAGCTGTGTTCATGGCTTTATCGAACCACAATTTTCTTCCTGGTGTGCGTTCTGTTCCGGCTTATTTGCCATCTTCAAATACTGAGACTAGAAAATTTTGCCCAAGTTTTTCAAAAGGAGACCGAGGTTGAGTTAATCTTGATGGAGCACCTCAAGATCAGAAGGAACCTTCGGCTGATGAGCCATAGGTTTCGAGTATTCATCTTGCTCTCTCTAATTATGGTCACAGCAAGTCAGCTCATTTCTCTGGTCATGGTTACTAGGTCTAGTGCTCATGTTAATATCTTCAAGGCTGGAGAGCTTGCGTTATGTTCCATTAGCCTAGTTATTAGTCTTTTCATTTGCCTGCGAAGTGCAACAAAAATAACACACAAAGCACAGTCGATAACGGGGCTTGCTGCAAAGTGGCATGTCTGCGCCACAATACAGTCTTTTGATTACACGGAAAGTGAGACTCCAATGGCTCCGATTTCTTCAGCTCAAGTGTTTCCTTTTGGTGCTGATACTGAATCAGAAGATGACGAAGCTGGAGAAGATGACGATTTGGACAACACCAGGCTGGTGCCAATTTACACCCAAACAATCTCATTCCAGAAAAGACAAGCTCTAGTGAAATATCTGGAGAATAATAGAGCAGGGATCACAGTGTTTGGGTTCACGGTGGATAGAATGTGGCTTCACTCTATTTTTGCAATTCAACTGGCCCTTCTGCTCTGGCTGCTCAACAAGACAATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

429

Amino Acids

49.23

Weight (kDa)

7.54

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03820 AT4G03820 AT4G03820 AT4G03820 AT4G22270 AT4G22270
fragaria_vesca	FvH4_3g01210 FvH4_3g01240 FvH4_3g01240 FvH4_3g01240
malus_domestica	MD10G1328800.v1.1
prunus_persica	Prupe.4G013300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0001771
rosa_laevigata	RLG00000030971
rosa_multiflora	Rmu_co8502563.1_g000001 Rmu_sc0008119.1_g000008 Rmu_ssc0000237.1_g000014
rosa_roxburghii	Rroxscaffold_1G00071230
rosa_rugosa	Rorug04G0392900
rosa_samantha	Rh5AG014200 Rh5BG017600 Rh5CG015300 Rh5DG015700
rosa_wichuraiana	Rw5G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1108
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	4 cut(s)	182, 313, 376, 446
AclWI	GGATC	2 cut(s)	123, 1193
AcsI	RAATTY	2 cut(s)	403, 640
AcuI	CTGAAG	1 cut(s)	1005
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	3 cut(s)	103, 129, 506
AgsI	TTSAA	7 cut(s)	74, 79, 412, 623, 659, 835, 1244
AjnI	CCWGG	2 cut(s)	585, 1100
AluBI	AGCT	7 cut(s)	415, 550, 784, 847, 1025, 1073, 1151
AluI	AGCT	7 cut(s)	415, 550, 784, 847, 1025, 1073, 1151
Alw21I	GWGCWC	3 cut(s)	285, 696, 820
Alw26I	GTCTC	6 cut(s)	193, 461, 484, 625, 659, 992
AlwI	GGATC	2 cut(s)	123, 1193
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	2 cut(s)	236, 1248
ApeKI	GCWGC	2 cut(s)	944, 1264
ApoI	RAATTY	2 cut(s)	403, 640
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	965
AspS9I	GGNCC	4 cut(s)	150, 309, 373, 1249
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	3 cut(s)	150, 309, 373
BanI	GGYRCC	1 cut(s)	1108
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	3 cut(s)	285, 696, 820
BbvI	GCAGC	2 cut(s)	931, 1251
BccI	CCATC	3 cut(s)	161, 624, 682
BciT130I	CCWGG	2 cut(s)	587, 1102
BcoDI	GTCTC	6 cut(s)	193, 461, 484, 625, 659, 992
BfaI	CTAG	5 cut(s)	635, 807, 813, 869, 1154
BisI	GCNGC	4 cut(s)	182, 447, 945, 1265
BlsI	GCNGC	4 cut(s)	183, 448, 946, 1266
Bme1390I	CCNGG	2 cut(s)	587, 1102
Bme18I	GGWCC	3 cut(s)	150, 309, 373
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	4 cut(s)	150, 309, 373, 1249
BmiI	GGNNCC	4 cut(s)	311, 713, 1011, 1110
BmrFI	CCNGG	2 cut(s)	587, 1102
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	3 cut(s)	861, 1095, 1187
BpuEI	CTTGAG	2 cut(s)	683, 1011
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	379, 669
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 183, 213
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 129, 506
Bse1I	ACTGG	2 cut(s)	142, 1251
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	587, 1102
BseDI	CCNNGG	2 cut(s)	379, 669
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	103, 129, 506
BseMII	CTCAG	4 cut(s)	60, 269, 291, 620
BseNI	ACTGG	2 cut(s)	142, 1251
BseRI	GAGGAG	3 cut(s)	191, 343, 407
BseXI	GCAGC	2 cut(s)	931, 1251
BshFI	GGCC	2 cut(s)	238, 1250
BshNI	GGYRCC	1 cut(s)	1108
BsiHKAI	GWGCWC	3 cut(s)	285, 696, 820
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	604
BslI	CCNNNNNNNGG	3 cut(s)	103, 129, 506
BsmAI	GTCTC	6 cut(s)	193, 461, 484, 625, 659, 992
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	238, 1250
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	3 cut(s)	285, 696, 820
Bsp143I	GATC	4 cut(s)	115, 426, 702, 1185
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	4 cut(s)	182, 313, 376, 446
BspANI	GGCC	2 cut(s)	238, 1250
BspCNI	CTCAG	4 cut(s)	59, 268, 290, 621
BspLI	GGNNCC	4 cut(s)	311, 713, 1011, 1110
BspPI	GGATC	2 cut(s)	123, 1193
BspT107I	GGYRCC	1 cut(s)	1108
BspTNI	GGTCTC	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	142, 1251
BssECI	CCNNGG	2 cut(s)	379, 669
BssMI	GATC	4 cut(s)	115, 426, 702, 1185
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	587, 1102
Bst4CI	ACNGT	6 cut(s)	396, 501, 927, 975, 1192, 1207
Bst6I	CTCTTC	1 cut(s)	344
BstC8I	GCNNGC	7 cut(s)	94, 179, 236, 285, 849, 893, 942
BstDEI	CTNAG	4 cut(s)	46, 255, 277, 629
BstDSI	CCRYGG	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	965
BstKTI	GATC	4 cut(s)	118, 429, 705, 1188
BstMAI	GTCTC	6 cut(s)	193, 461, 484, 625, 659, 992
BstMBI	GATC	4 cut(s)	115, 426, 702, 1185
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 303, 312, 1264
BstNI	CCWGG	2 cut(s)	587, 1102
BstNSI	RCATGY	2 cut(s)	96, 959
BstSCI	CCNGG	2 cut(s)	585, 1100
BstV1I	GCAGC	2 cut(s)	931, 1251
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	238, 1250
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	285, 1197
Cac8I	GCNNGC	7 cut(s)	94, 179, 236, 285, 849, 893, 942
CfoI	GCGC	1 cut(s)	965
Cfr13I	GGNCC	4 cut(s)	150, 309, 373, 1249
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	9 cut(s)	93, 147, 245, 380, 424, 558, 799, 821, 956
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	4 cut(s)	46, 255, 277, 629
DpnI	GATC	4 cut(s)	117, 428, 704, 1187
DpnII	GATC	4 cut(s)	115, 426, 702, 1185
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	659
Eco47I	GGWCC	3 cut(s)	150, 309, 373
Eco57I	CTGAAG	1 cut(s)	1005
Eco88I	CYCGRG	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	585, 1100
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	9 cut(s)	96, 150, 248, 383, 427, 561, 802, 824, 959
FatI	CATG	9 cut(s)	92, 146, 244, 379, 423, 557, 798, 820, 955
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	4 cut(s)	182, 447, 945, 1265
Fsp4HI	GCNGC	4 cut(s)	182, 447, 945, 1265
FspBI	CTAG	5 cut(s)	635, 807, 813, 869, 1154
GlaI	GCGC	1 cut(s)	964
GluI	GCNGC	4 cut(s)	182, 447, 945, 1265
GsuI	CTGGAG	3 cut(s)	861, 1095, 1187
HaeIII	GGCC	2 cut(s)	238, 1250
HapII	CCGG	1 cut(s)	604
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	965
Hin1II	CATG	9 cut(s)	96, 150, 248, 383, 427, 561, 802, 824, 959
Hin6I	GCGC	1 cut(s)	963
HinP1I	GCGC	1 cut(s)	963
HinfI	GANTC	2 cut(s)	1000, 1055
HpaII	CCGG	1 cut(s)	604
Hpy166II	GTNNAC	2 cut(s)	540, 1203
Hpy188I	TCNGA	5 cut(s)	214, 402, 707, 1014, 1060
Hpy188III	TCNNGA	5 cut(s)	483, 685, 700, 1138, 1166
Hpy8I	GTNNAC	2 cut(s)	540, 1203
HpyAV	CCTTC	5 cut(s)	59, 364, 702, 725, 1262
HpyCH4III	ACNGT	6 cut(s)	396, 501, 927, 975, 1192, 1207
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	5 cut(s)	92, 423, 902, 947, 1238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 303, 312, 1264
HpyF3I	CTNAG	4 cut(s)	46, 255, 277, 629
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	9 cut(s)	96, 150, 248, 383, 427, 561, 802, 824, 959
HspAI	GCGC	1 cut(s)	963
Kzo9I	GATC	4 cut(s)	115, 426, 702, 1185
LmnI	GCTCC	6 cut(s)	215, 420, 485, 547, 691, 1015
Lsp1109I	GCAGC	2 cut(s)	931, 1251
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	5 cut(s)	635, 807, 813, 869, 1154
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	2 cut(s)	769, 802
MalI	GATC	4 cut(s)	117, 428, 704, 1187
MboI	GATC	4 cut(s)	115, 426, 702, 1185
MfeI	CAATTG	1 cut(s)	1278
MhlI	GDGCHC	3 cut(s)	285, 696, 820
MlyI	GAGTC	1 cut(s)	994
MmeI	TCCRAC	2 cut(s)	237, 525
MnlI	CCTC	9 cut(s)	107, 126, 212, 308, 321, 324, 428, 664, 707
Mph1103I	ATGCAT	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	3 cut(s)	521, 680, 825
MslI	CAYNNNNRTG	2 cut(s)	176, 428
MspI	CCGG	1 cut(s)	604
MspR9I	CCNGG	2 cut(s)	587, 1102
MunI	CAATTG	1 cut(s)	1278
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	587, 1102
MwoI	GCNNNNNNNGC	4 cut(s)	216, 303, 312, 1264
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	115, 426, 702, 1185
NlaIII	CATG	9 cut(s)	96, 150, 248, 383, 427, 561, 802, 824, 959
NlaIV	GGNNCC	4 cut(s)	311, 713, 1011, 1110
NmuCI	GTSAC	1 cut(s)	769
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	2 cut(s)	96, 959
PaeI	GCATGC	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	238
PctI	GAATGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	1055
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	183, 448, 946, 1266
PleI	GAGTC	1 cut(s)	994
PpsI	GAGTC	1 cut(s)	994
Psp6I	CCWGG	2 cut(s)	585, 1100
PspGI	CCWGG	2 cut(s)	585, 1100
PspN4I	GGNNCC	4 cut(s)	311, 713, 1011, 1110
PspPI	GGNCC	4 cut(s)	150, 309, 373, 1249
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	2 cut(s)	176, 428
SaqAI	TTAA	3 cut(s)	521, 680, 825
SatI	GCNGC	4 cut(s)	182, 447, 945, 1265
Sau3AI	GATC	4 cut(s)	115, 426, 702, 1185
Sau96I	GGNCC	4 cut(s)	150, 309, 373, 1249
SchI	GAGTC	1 cut(s)	994
ScrFI	CCNGG	2 cut(s)	587, 1102
SduI	GDGCHC	3 cut(s)	285, 696, 820
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	3 cut(s)	150, 309, 373
SmiMI	CAYNNNNRTG	2 cut(s)	176, 428
SmlI	CTYRAG	2 cut(s)	698, 1026
SmoI	CTYRAG	2 cut(s)	698, 1026
SphI	GCATGC	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	4 cut(s)	182, 313, 376, 446
SspMI	CTAG	5 cut(s)	635, 807, 813, 869, 1154
StuI	AGGCCT	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	585, 1100
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	6 cut(s)	396, 501, 927, 975, 1192, 1207
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	4 cut(s)	87, 568, 739, 929
TaqII	GACCGA	1 cut(s)	683
TauI	GCSGC	2 cut(s)	184, 449
TfiI	GAWTC	1 cut(s)	1055
Tru1I	TTAA	3 cut(s)	521, 680, 825
Tru9I	TTAA	3 cut(s)	521, 680, 825
TscAI	CASTG	2 cut(s)	285, 1197
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	2 cut(s)	944, 1264
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	7 cut(s)	135, 237, 280, 396, 546, 736, 874
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	2 cut(s)	285, 1197
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	3 cut(s)	150, 309, 373
XapI	RAATTY	2 cut(s)	403, 640
XceI	RCATGY	2 cut(s)	96, 959
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	5 cut(s)	635, 807, 813, 869, 1154
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.