Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000237.1

Orthogroup ID

OG0007624

Physical Location & Seq

Genomic Coordinates Forward (+)

52772 .. 54450

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000237.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atggaagatcaaagccatccaattctgccaaaacagaactctatctccagccatgaaggacttgagttgccgagctttggttcgtggctgaaatgggtctttgtggaccagtctagtatatggagaactggtctttcatggtcaatcttcttcgtcttagccattggcgtaccactagtcactcacttccttctctcctgctcgagctgtgatgcgaaccatagcagaccttaccatgttgtttcccagatttcgctttccttgttcgcaatgctgtccttcattagcctctcctgctggactcgtaaatttggtctgaagaggtttctcttccttgacaagttaagtgatgcaagtgagaaagtccgtcatgaatataagcaacagttccagaattcaatgaagctcctatgcttgattgtcttcccctgttttgctgcagagtgtgtgtacaaaatctggtggaccacaattttcttcctggtgtgtgttctgttccggctcatttgccatctacaaatactaagactagaaatttacgcgctagtttttcaaaaggaaaccgaggtggagacgataatgatggaacacaacaagatcagaaggacctttaggattataagccaccggtttcgagcgttcatcttgatctctctgattatggttacagctagtcagctcgcgtttcttgtcgtgataaccaggtccagtgctcatgttaatatcttcaaggctggagaactcgctttatgttctataagccttgtgactagtctattcatatgtttgcggagtgcaaccaaagtaacacataaagcacagaaagttactgggcttgctgcaaagtggcatgtctgtgccacaatccactcttttgattacgcagaaactgagactccgatggtgcctcaggtttcctcagatcatcaagtgtttcccttcggtgctgatttggaatcagatgatgaagaaggggacgaagaagacgatattgacaacaccaagttggtgccaattttcacaaacacaatctcattccagaagagacaagctctagtgaaatatttagagcataatagagcaggaattacagtgtttgggttcatggtggacagaacatggcttcactctatttttggaattcagctggctcttcttctctggatgctcaacaagacaattagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3537

Protein Analysis

395

Amino Acids

45.36

Weight (kDa)

8.0

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03820 AT4G03820 AT4G03820 AT4G03820 AT4G22270 AT4G22270
fragaria_vesca	FvH4_3g01210 FvH4_3g01240 FvH4_3g01240 FvH4_3g01240
malus_domestica	MD10G1328800.v1.1
prunus_persica	Prupe.4G013300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0001771
rosa_laevigata	RLG00000030971
rosa_multiflora	Rmu_co8502563.1_g000001 Rmu_sc0008119.1_g000008 Rmu_ssc0000237.1_g000014
rosa_roxburghii	Rroxscaffold_1G00071230
rosa_rugosa	Rorug04G0392900
rosa_samantha	Rh5AG014200 Rh5BG017600 Rh5CG015300 Rh5DG015700
rosa_wichuraiana	Rw5G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	620
AccB1I	GGYRCC	2 cut(s)	904, 1009
AccII	CGCG	2 cut(s)	542, 683
AciI	CCGC	1 cut(s)	790
AcsI	RAATTY	4 cut(s)	308, 394, 534, 1140
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	171, 452
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgeI	ACCGGT	1 cut(s)	627
AgsI	TTSAA	3 cut(s)	399, 554, 730
AhlI	ACTAGT	2 cut(s)	175, 770
AjnI	CCWGG	2 cut(s)	480, 701
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	7 cut(s)	75, 207, 406, 671, 679, 1052, 1147
AluI	AGCT	7 cut(s)	75, 207, 406, 671, 679, 1052, 1147
Alw21I	GWGCWC	1 cut(s)	715
Alw26I	GTCTC	3 cut(s)	566, 887, 1039
AlwNI	CAGNNNCTG	1 cut(s)	890
Ama87I	CYCGRG	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	437, 839
ApoI	RAATTY	4 cut(s)	308, 394, 534, 1140
AsiGI	ACCGGT	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	4 cut(s)	106, 465, 606, 705
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	4 cut(s)	106, 465, 606, 705
AxyI	CCTNAGG	1 cut(s)	909
BanI	GGYRCC	2 cut(s)	904, 1009
BbsI	GAAGAC	2 cut(s)	415, 990
Bbv12I	GWGCWC	1 cut(s)	715
BbvI	GCAGC	2 cut(s)	424, 826
BccI	CCATC	4 cut(s)	24, 519, 577, 895
BciT130I	CCWGG	2 cut(s)	482, 703
BcoDI	GTCTC	3 cut(s)	566, 887, 1039
BcuI	ACTAGT	2 cut(s)	175, 770
BfaI	CTAG	7 cut(s)	114, 176, 530, 545, 672, 771, 1055
BfmI	CTRYAG	1 cut(s)	438
BisI	GCNGC	2 cut(s)	438, 840
BlsI	GCNGC	2 cut(s)	439, 841
Bme1390I	CCNGG	2 cut(s)	482, 703
Bme18I	GGWCC	4 cut(s)	106, 465, 606, 705
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	4 cut(s)	106, 465, 606, 705
BmiI	GGNNCC	2 cut(s)	906, 1011
BmrFI	CCNGG	2 cut(s)	482, 703
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	3 cut(s)	202, 340, 1155
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	415, 990
BplI	GAGNNNNNCTC	2 cut(s)	1036, 1068
BpmI	CTGGAG	2 cut(s)	31, 756
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	627
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 115, 145, 880, 910
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	627
Bse1I	ACTGG	4 cut(s)	109, 133, 708, 835
Bse21I	CCTNAGG	1 cut(s)	909
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	482, 703
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	16, 1170
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	882, 923, 933
BseNI	ACTGG	4 cut(s)	109, 133, 708, 835
BseXI	GCAGC	2 cut(s)	424, 826
Bsh1236I	CGCG	2 cut(s)	542, 683
BshNI	GGYRCC	2 cut(s)	904, 1009
BshTI	ACCGGT	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	715
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	499, 628
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	3 cut(s)	566, 887, 1039
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	989
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	715
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	7, 597, 648, 922
BspACI	CCGC	1 cut(s)	790
BspCNI	CTCAG	3 cut(s)	883, 922, 932
BspFNI	CGCG	2 cut(s)	542, 683
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	906, 1011
BspMAI	CTGCAG	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	1158
BspT107I	GGYRCC	2 cut(s)	904, 1009
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	627
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	4 cut(s)	109, 133, 708, 835
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	4 cut(s)	7, 597, 648, 922
Bst2UI	CCWGG	2 cut(s)	482, 703
Bst4CI	ACNGT	2 cut(s)	387, 1093
Bst6I	CTCTTC	4 cut(s)	314, 335, 1037, 1158
BstAUI	TGTACA	1 cut(s)	450
BstC8I	GCNNGC	3 cut(s)	681, 837, 1149
BstDEI	CTNAG	5 cut(s)	157, 524, 891, 909, 919
BstF5I	GGATG	2 cut(s)	16, 1170
BstFNI	CGCG	2 cut(s)	542, 683
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	4 cut(s)	10, 600, 651, 925
BstMAI	GTCTC	3 cut(s)	566, 887, 1039
BstMBI	GATC	4 cut(s)	7, 597, 648, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	2 cut(s)	482, 703
BstNSI	RCATGY	1 cut(s)	854
BstSCI	CCNGG	2 cut(s)	480, 701
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	2 cut(s)	542, 683
BstV1I	GCAGC	2 cut(s)	424, 826
BstV2I	GAAGAC	2 cut(s)	415, 990
Bsu36I	CCTNAGG	1 cut(s)	909
BtsCI	GGATG	2 cut(s)	16, 1170
BtsIMutI	CAGTG	2 cut(s)	715, 1098
Cac8I	GCNNGC	3 cut(s)	681, 837, 1149
CaiI	CAGNNNCTG	1 cut(s)	890
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	627
Cfr13I	GGNCC	4 cut(s)	106, 465, 606, 705
CsiI	ACCWGGT	1 cut(s)	701
Csp6I	GTAC	2 cut(s)	170, 451
CspAI	ACCGGT	1 cut(s)	627
CviAII	CATG	8 cut(s)	53, 138, 236, 371, 716, 851, 1105, 1119
CviQI	GTAC	2 cut(s)	170, 451
DdeI	CTNAG	5 cut(s)	157, 524, 891, 909, 919
DpnI	GATC	4 cut(s)	9, 599, 650, 924
DpnII	GATC	4 cut(s)	7, 597, 648, 922
Eam1104I	CTCTTC	4 cut(s)	314, 335, 1037, 1158
EarI	CTCTTC	4 cut(s)	314, 335, 1037, 1158
Eco47I	GGWCC	4 cut(s)	106, 465, 606, 705
Eco57I	CTGAAG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	909
Eco88I	CYCGRG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	606
EcoRI	GAATTC	2 cut(s)	394, 1140
EcoRII	CCWGG	2 cut(s)	480, 701
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	8 cut(s)	56, 141, 239, 374, 719, 854, 1108, 1122
FaqI	GGGAC	1 cut(s)	989
FatI	CATG	8 cut(s)	52, 137, 235, 370, 715, 850, 1104, 1118
FauNDI	CATATG	1 cut(s)	782
Fnu4HI	GCNGC	2 cut(s)	438, 840
FokI	GGATG	2 cut(s)	3, 1177
Fsp4HI	GCNGC	2 cut(s)	438, 840
FspBI	CTAG	7 cut(s)	114, 176, 530, 545, 672, 771, 1055
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	2 cut(s)	438, 840
GsuI	CTGGAG	2 cut(s)	31, 756
HapII	CCGG	2 cut(s)	499, 628
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	8 cut(s)	56, 141, 239, 374, 719, 854, 1108, 1122
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	3 cut(s)	301, 895, 956
HpaII	CCGG	2 cut(s)	499, 628
Hpy166II	GTNNAC	4 cut(s)	106, 451, 465, 1111
Hpy188I	TCNGA	6 cut(s)	318, 602, 657, 900, 922, 961
Hpy188III	TCNNGA	6 cut(s)	371, 391, 646, 694, 1039, 1162
Hpy8I	GTNNAC	4 cut(s)	106, 451, 465, 1111
HpyAV	CCTTC	6 cut(s)	50, 200, 289, 597, 949, 965
HpyCH4III	ACNGT	2 cut(s)	387, 1093
HpyCH4V	TGCA	4 cut(s)	353, 440, 797, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	5 cut(s)	157, 524, 891, 909, 919
Hsp92II	CATG	8 cut(s)	56, 141, 239, 374, 719, 854, 1108, 1122
HspAI	GCGC	1 cut(s)	542
Kzo9I	GATC	4 cut(s)	7, 597, 648, 922
LguI	GCTCTTC	1 cut(s)	1158
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	2 cut(s)	424, 826
LweI	GCATC	3 cut(s)	202, 340, 1155
MabI	ACCWGGT	1 cut(s)	701
MaeI	CTAG	7 cut(s)	114, 176, 530, 545, 672, 771, 1055
MaeIII	GTNAC	5 cut(s)	178, 664, 766, 805, 826
MalI	GATC	4 cut(s)	9, 599, 650, 924
MboI	GATC	4 cut(s)	7, 597, 648, 922
MhlI	GDGCHC	1 cut(s)	715
MluCI	AATT	9 cut(s)	21, 308, 394, 471, 534, 1014, 1086, 1140, 1179
MlyI	GAGTC	2 cut(s)	295, 889
MnlI	CCTC	5 cut(s)	299, 315, 559, 918, 928
MseI	TTAA	3 cut(s)	344, 720, 1186
MslI	CAYNNNNRTG	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	1147
MspI	CCGG	2 cut(s)	499, 628
MspR9I	CCNGG	2 cut(s)	482, 703
MvaI	CCWGG	2 cut(s)	482, 703
MvnI	CGCG	2 cut(s)	542, 683
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeI	CATATG	1 cut(s)	782
NdeII	GATC	4 cut(s)	7, 597, 648, 922
NlaIII	CATG	8 cut(s)	56, 141, 239, 374, 719, 854, 1108, 1122
NlaIV	GGNNCC	2 cut(s)	906, 1011
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	178, 766
NspI	RCATGY	1 cut(s)	854
PaeR7I	CTCGAG	1 cut(s)	202
PagI	TCATGA	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	1158
PcsI	WCGNNNNNNNCGW	1 cut(s)	984
PfeI	GAWTC	1 cut(s)	956
PinAI	ACCGGT	1 cut(s)	627
PkrI	GCNGC	2 cut(s)	439, 841
PleI	GAGTC	2 cut(s)	295, 889
PpsI	GAGTC	2 cut(s)	295, 889
PpuMI	RGGWCCY	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	480, 701
PspGI	CCWGG	2 cut(s)	480, 701
PspN4I	GGNNCC	2 cut(s)	906, 1011
PspPI	GGNCC	4 cut(s)	106, 465, 606, 705
PspPPI	RGGWCCY	1 cut(s)	606
PspXI	VCTCGAGB	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	890
PvuII	CAGCTG	1 cut(s)	1147
RsaI	GTAC	2 cut(s)	171, 452
RsaNI	GTAC	2 cut(s)	170, 451
RseI	CAYNNNNRTG	1 cut(s)	855
SapI	GCTCTTC	1 cut(s)	1158
SaqAI	TTAA	3 cut(s)	344, 720, 1186
SatI	GCNGC	2 cut(s)	438, 840
Sau3AI	GATC	4 cut(s)	7, 597, 648, 922
Sau96I	GGNCC	4 cut(s)	106, 465, 606, 705
SchI	GAGTC	2 cut(s)	295, 889
ScrFI	CCNGG	2 cut(s)	482, 703
SduI	GDGCHC	1 cut(s)	715
SexAI	ACCWGGT	1 cut(s)	701
SfaNI	GCATC	3 cut(s)	202, 340, 1155
SfcI	CTRYAG	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	202
SinI	GGWCC	4 cut(s)	106, 465, 606, 705
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	855
SmlI	CTYRAG	2 cut(s)	62, 202
SmoI	CTYRAG	2 cut(s)	62, 202
SpeI	ACTAGT	2 cut(s)	175, 770
Sse9I	AATT	9 cut(s)	21, 308, 394, 471, 534, 1014, 1086, 1140, 1179
SsiI	CCGC	1 cut(s)	790
SspI	AATATT	1 cut(s)	1064
SspMI	CTAG	7 cut(s)	114, 176, 530, 545, 672, 771, 1055
StyD4I	CCNGG	2 cut(s)	480, 701
TaaI	ACNGT	2 cut(s)	387, 1093
TaqI	TCGA	2 cut(s)	203, 634
TasI	AATT	9 cut(s)	21, 308, 394, 471, 534, 1014, 1086, 1140, 1179
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	956
Tru1I	TTAA	3 cut(s)	344, 720, 1186
Tru9I	TTAA	3 cut(s)	344, 720, 1186
TscAI	CASTG	2 cut(s)	715, 1098
TseFI	GTSAC	2 cut(s)	178, 766
TseI	GCWGC	2 cut(s)	437, 839
Tsp45I	GTSAC	2 cut(s)	178, 766
TspDTI	ATGAA	9 cut(s)	69, 126, 271, 387, 416, 631, 769, 981, 1093
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	2 cut(s)	715, 1098
VpaK11BI	GGWCC	4 cut(s)	106, 465, 606, 705
XapI	RAATTY	4 cut(s)	308, 394, 534, 1140
XceI	RCATGY	1 cut(s)	854
XhoI	CTCGAG	1 cut(s)	202
XspI	CTAG	7 cut(s)	114, 176, 530, 545, 672, 771, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.