FvH4_3g01210

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007624
Physical Location & Seq
Reverse (-)
585828 .. 588196
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01210.t1

Sequence Viewer

Length: 1284 bp
ATGGAAGATCAAACGCAACCTATTCTGCCAAAACAGAATTCTAACTCCGGCCATGAAGCACTTGAGTTTAAGAGCTTTAGTTCGTGCCTTAAATGGGTCTTTGTGGATCAGTCTAGTATATGGAGGACAGGTCTTTCATGGTCACTCTTCTTCGTCTTAGCCATTGGTGTACCACTAGTCTCGAACTTTCTTCTCTCCTGCTCGAGCTGTGATGCCAACCATAGTAGACCTTACCATGTTGTTTCTCAGCTTTCGCTTTCCTTGTTCGCGGGTCTCTCCTTCGTCAGCCTCTCCTTCTGGACTCGAAAATTCGGTCCGAGAAGGTTTCTCTTCCTTGACAAGCTATGTGATGCAAGTGAGAAAGTCCGTCAAGAATATAAGCAACTATTTCATAATTCAATGAAGCTCCTATGCTTCATTGTCTTCCCCTGTTTTGCTGCAGAGTGTGTGTACAAAATATGGTGGTATGTCTCAGGAGCAACAGAACTACCATACTATGGTAACATGTATTTGAGTGACACCATACTATGCATGTTGGAACTGTGTTCATGGCTTTACAGGACCACAATTTTCTTCCTGGTGTGTGTTATGTTCCGGCTTATATGCAGATGTCAAATAATAAGAATAGAAAGTTGCGCACAAGTTTTTCAAAAGGAAACCGAGGTGGAGACCATAATGATGGAACACAACAAGATCAGAAAGACCCTTCGGGTTATAAGCCATCGATTTCGAGTGTTCATCTTGATCTCTCTGATCATGGTTACTGCGAGTCAGCTCGCCTCTCTTGTCACTATAACCAGGTCGAGTGCTCATGTTAATATCTTCAAGGCCGGAGAACTCGCCTTATGTTCTATAAGCCTTGTTACTAGTCTATTCATATGCTTGCGGAGTGCAACCAAATTAACACACAAGGCACACTCAATTACTGGGCTTGCTGCAAAGTGGAATGTCTGTGCCACAATCCACTCTTTTGATTACGCAGAAACCGAGACTCCGATGATACCTCAGGTTTCCTCAGATCATCAAGTGTTTCCTTTCGGTGCTGATTTGGAATCGGATGATGAAGAAGCGGACGAAGACGACGATCTGGACAATGCCAAGTTGGTGCCAGTTTTCACAAACACAATCTCATTCCAGAAGAGACATGCTCTAGTGAAATATTTGGAGCATAATAGAGCGGGAATTACAGTGTTTGGGACCATGGTGGACAGAACATGGCTTCACTCTATTTTTGGAATTCAGCTGGCACTTCTTCTATGGACGCTCAACAAGACAATTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

428

Amino Acids

48.81

Weight (kDa)

7.53

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 22 - 413 2.5e-154 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
Acc16I TGCGCA 1 cut(s) 637
AccB1I GGYRCC 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 497
AccBSI CCGCTC 1 cut(s) 1178
AccI GTMKAC 1 cut(s) 226
AccII CGCG 1 cut(s) 269
AciI CCGC 4 cut(s) 269, 886, 1070, 1178
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 3 cut(s) 37, 308, 1236
AfaI GTAC 2 cut(s) 171, 452
AfiI CCNNNNNNNGG 2 cut(s) 94, 497
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 3 cut(s) 399, 650, 826
AhlI ACTAGT 2 cut(s) 175, 866
AjnI CCWGG 2 cut(s) 576, 797
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 7 cut(s) 75, 207, 250, 343, 406, 775, 1243
AluI AGCT 7 cut(s) 75, 207, 250, 343, 406, 775, 1243
Alw21I GWGCWC 1 cut(s) 811
Alw26I GTCTC 6 cut(s) 184, 278, 475, 662, 983, 1135
AlwI GGATC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 202
AoxI GGCC 2 cut(s) 49, 828
ApeKI GCWGC 2 cut(s) 437, 935
ApoI RAATTY 3 cut(s) 37, 308, 1236
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 3 cut(s) 314, 561, 1197
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 3 cut(s) 314, 561, 1197
AxyI CCTNAGG 1 cut(s) 1005
BanI GGYRCC 1 cut(s) 1105
BbsI GAAGAC 2 cut(s) 415, 1083
Bbv12I GWGCWC 1 cut(s) 811
BbvI GCAGC 2 cut(s) 424, 922
BccI CCATC 2 cut(s) 673, 729
BciT130I CCWGG 2 cut(s) 578, 799
BclI TGATCA 1 cut(s) 753
BcoDI GTCTC 6 cut(s) 184, 278, 475, 662, 983, 1135
BcuI ACTAGT 2 cut(s) 175, 866
BfaI CTAG 4 cut(s) 114, 176, 867, 1151
BfmI CTRYAG 1 cut(s) 438
BisI GCNGC 2 cut(s) 438, 936
BlsI GCNGC 2 cut(s) 439, 937
Bme1390I CCNGG 2 cut(s) 578, 799
Bme18I GGWCC 3 cut(s) 314, 561, 1197
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 3 cut(s) 314, 561, 1197
BmiI GGNNCC 2 cut(s) 1107, 1198
BmrFI CCNGG 2 cut(s) 578, 799
BmrI ACTGGG 1 cut(s) 936
BmsI GCATC 2 cut(s) 202, 340
BmuI ACTGGG 1 cut(s) 936
BpiI GAAGAC 2 cut(s) 415, 1083
BplI GAGNNNNNCTC 2 cut(s) 1132, 1164
BpuEI CTTGAG 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 724
BsaI GGTCTC 2 cut(s) 278, 662
BsaJI CCNNGG 2 cut(s) 660, 1200
BsaXI ACNNNNNCTCC 4 cut(s) 115, 145, 976, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 497
Bse1I ACTGG 2 cut(s) 931, 1109
Bse21I CCTNAGG 1 cut(s) 1005
BseBI CCWGG 2 cut(s) 578, 799
BseCI ATCGAT 1 cut(s) 724
BseDI CCNNGG 2 cut(s) 660, 1200
BseGI GGATG 1 cut(s) 1063
BseLI CCNNNNNNNGG 2 cut(s) 94, 497
BseMII CTCAG 4 cut(s) 260, 486, 1019, 1029
BseNI ACTGG 2 cut(s) 931, 1109
BseXI GCAGC 2 cut(s) 424, 922
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 2 cut(s) 51, 830
BshNI GGYRCC 1 cut(s) 1105
BshVI ATCGAT 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 811
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 3 cut(s) 48, 595, 831
BslFI GGGAC 1 cut(s) 1210
BslI CCNNNNNNNGG 2 cut(s) 94, 497
BsmAI GTCTC 6 cut(s) 184, 278, 475, 662, 983, 1135
BsmFI GGGAC 1 cut(s) 1210
BsnI GGCC 2 cut(s) 51, 830
Bso31I GGTCTC 2 cut(s) 278, 662
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 811
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 7 cut(s) 7, 106, 693, 744, 753, 1018, 1084
Bsp19I CCATGG 1 cut(s) 1200
BspACI CCGC 4 cut(s) 269, 886, 1070, 1178
BspANI GGCC 2 cut(s) 51, 830
BspCNI CTCAG 4 cut(s) 259, 485, 1018, 1028
BspDI ATCGAT 1 cut(s) 724
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 2 cut(s) 1107, 1198
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 1105
BspTNI GGTCTC 2 cut(s) 278, 662
BsrBI CCGCTC 1 cut(s) 1178
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 2 cut(s) 931, 1109
BssECI CCNNGG 2 cut(s) 660, 1200
BssMI GATC 7 cut(s) 7, 106, 693, 744, 753, 1018, 1084
BssT1I CCWWGG 1 cut(s) 1200
Bst2UI CCWGG 2 cut(s) 578, 799
Bst4CI ACNGT 2 cut(s) 543, 1189
Bst6I CTCTTC 3 cut(s) 152, 335, 1133
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 4 cut(s) 777, 884, 933, 1245
BstDEI CTNAG 5 cut(s) 157, 246, 472, 1005, 1015
BstDSI CCRYGG 1 cut(s) 1200
BstF5I GGATG 1 cut(s) 1063
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 7 cut(s) 10, 109, 696, 747, 756, 1021, 1087
BstMAI GTCTC 6 cut(s) 184, 278, 475, 662, 983, 1135
BstMBI GATC 7 cut(s) 7, 106, 693, 744, 753, 1018, 1084
BstNI CCWGG 2 cut(s) 578, 799
BstNSI RCATGY 3 cut(s) 508, 535, 1148
BstSCI CCNGG 2 cut(s) 576, 797
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 424, 922
BstV2I GAAGAC 2 cut(s) 415, 1083
BstXI CCANNNNNNTGG 1 cut(s) 679
Bsu15I ATCGAT 1 cut(s) 724
Bsu36I CCTNAGG 1 cut(s) 1005
BsuRI GGCC 2 cut(s) 51, 830
BsuTUI ATCGAT 1 cut(s) 724
BtgI CCRYGG 1 cut(s) 1200
BtsCI GGATG 1 cut(s) 1063
BtsIMutI CAGTG 1 cut(s) 1194
Cac8I GCNNGC 4 cut(s) 777, 884, 933, 1245
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 3 cut(s) 314, 561, 1197
ClaI ATCGAT 1 cut(s) 724
CpoI CGGWCCG 1 cut(s) 314
CseI GACGC 1 cut(s) 1270
CsiI ACCWGGT 1 cut(s) 797
Csp6I GTAC 2 cut(s) 170, 451
CspI CGGWCCG 1 cut(s) 314
CviQI GTAC 2 cut(s) 170, 451
DdeI CTNAG 5 cut(s) 157, 246, 472, 1005, 1015
DpnI GATC 7 cut(s) 9, 108, 695, 746, 755, 1020, 1086
DpnII GATC 7 cut(s) 7, 106, 693, 744, 753, 1018, 1084
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 3 cut(s) 152, 335, 1133
EarI CTCTTC 3 cut(s) 152, 335, 1133
Eco130I CCWWGG 1 cut(s) 1200
Eco31I GGTCTC 2 cut(s) 278, 662
Eco47I GGWCC 3 cut(s) 314, 561, 1197
Eco81I CCTNAGG 1 cut(s) 1005
Eco88I CYCGRG 1 cut(s) 202
EcoRI GAATTC 2 cut(s) 37, 1236
EcoRII CCWGG 2 cut(s) 576, 797
EcoT14I CCWWGG 1 cut(s) 1200
EcoT22I ATGCAT 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 1200
FaqI GGGAC 1 cut(s) 1210
FauI CCCGC 2 cut(s) 262, 1171
FauNDI CATATG 1 cut(s) 878
FbaI TGATCA 1 cut(s) 753
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 438, 936
FokI GGATG 1 cut(s) 1070
Fsp4HI GCNGC 2 cut(s) 438, 936
FspBI CTAG 4 cut(s) 114, 176, 867, 1151
FspI TGCGCA 1 cut(s) 637
GlaI GCGC 1 cut(s) 637
GluI GCNGC 2 cut(s) 438, 936
HaeIII GGCC 2 cut(s) 51, 830
HapII CCGG 3 cut(s) 48, 595, 831
HgaI GACGC 1 cut(s) 1270
HhaI GCGC 1 cut(s) 638
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HinfI GANTC 4 cut(s) 301, 769, 991, 1052
HpaII CCGG 3 cut(s) 48, 595, 831
Hpy166II GTNNAC 4 cut(s) 170, 227, 451, 1207
Hpy188I TCNGA 6 cut(s) 318, 698, 753, 996, 1018, 1057
Hpy188III TCNNGA 7 cut(s) 181, 298, 371, 474, 742, 1088, 1135
Hpy8I GTNNAC 4 cut(s) 170, 227, 451, 1207
Hpy99I CGWCG 1 cut(s) 1085
HpyAV CCTTC 4 cut(s) 289, 304, 315, 716
HpyCH4III ACNGT 2 cut(s) 543, 1189
HpyCH4V TGCA 6 cut(s) 353, 440, 531, 606, 893, 938
HpyF3I CTNAG 5 cut(s) 157, 246, 472, 1005, 1015
HspAI GCGC 1 cut(s) 636
Ksp22I TGATCA 1 cut(s) 753
Kzo9I GATC 7 cut(s) 7, 106, 693, 744, 753, 1018, 1084
LmnI GCTCC 3 cut(s) 411, 476, 1165
Lsp1109I GCAGC 2 cut(s) 424, 922
LweI GCATC 2 cut(s) 202, 340
MabI ACCWGGT 1 cut(s) 797
MaeI CTAG 4 cut(s) 114, 176, 867, 1151
MaeIII GTNAC 6 cut(s) 141, 500, 515, 760, 787, 862
MalI GATC 7 cut(s) 9, 108, 695, 746, 755, 1020, 1086
MbiI CCGCTC 1 cut(s) 1178
MboI GATC 7 cut(s) 7, 106, 693, 744, 753, 1018, 1084
MhlI GDGCHC 1 cut(s) 811
MluCI AATT 9 cut(s) 37, 308, 394, 567, 899, 921, 1182, 1236, 1275
MlyI GAGTC 3 cut(s) 295, 778, 985
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 6 cut(s) 117, 299, 655, 790, 1014, 1024
Mph1103I ATGCAT 1 cut(s) 533
MseI TTAA 5 cut(s) 69, 90, 816, 902, 1282
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 1 cut(s) 1243
MspI CCGG 3 cut(s) 48, 595, 831
MspR9I CCNGG 2 cut(s) 578, 799
MvaI CCWGG 2 cut(s) 578, 799
MvnI CGCG 1 cut(s) 269
NcoI CCATGG 1 cut(s) 1200
NdeI CATATG 1 cut(s) 878
NdeII GATC 7 cut(s) 7, 106, 693, 744, 753, 1018, 1084
NlaIV GGNNCC 2 cut(s) 1107, 1198
NmuCI GTSAC 3 cut(s) 141, 515, 787
NsbI TGCGCA 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 533
NspI RCATGY 3 cut(s) 508, 535, 1148
PaeR7I CTCGAG 1 cut(s) 202
PciI ACATGT 1 cut(s) 504
PcsI WCGNNNNNNNCGW 2 cut(s) 984, 1080
PfeI GAWTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 2 cut(s) 439, 937
PleI GAGTC 3 cut(s) 295, 777, 985
PpsI GAGTC 3 cut(s) 295, 777, 985
PscI ACATGT 1 cut(s) 504
PsiI TTATAA 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 576, 797
PspGI CCWGG 2 cut(s) 576, 797
PspN4I GGNNCC 2 cut(s) 1107, 1198
PspPI GGNCC 3 cut(s) 314, 561, 1197
PspXI VCTCGAGB 1 cut(s) 202
PstI CTGCAG 1 cut(s) 442
PvuII CAGCTG 1 cut(s) 1243
RsaI GTAC 2 cut(s) 171, 452
RsaNI GTAC 2 cut(s) 170, 451
RseI CAYNNNNRTG 1 cut(s) 677
Rsr2I CGGWCCG 1 cut(s) 314
RsrII CGGWCCG 1 cut(s) 314
SaqAI TTAA 5 cut(s) 69, 90, 816, 902, 1282
SatI GCNGC 2 cut(s) 438, 936
Sau3AI GATC 7 cut(s) 7, 106, 693, 744, 753, 1018, 1084
Sau96I GGNCC 3 cut(s) 314, 561, 1197
SchI GAGTC 3 cut(s) 295, 778, 985
ScrFI CCNGG 2 cut(s) 578, 799
SduI GDGCHC 1 cut(s) 811
SexAI ACCWGGT 1 cut(s) 797
SfaNI GCATC 2 cut(s) 202, 340
SfcI CTRYAG 1 cut(s) 438
Sfr274I CTCGAG 1 cut(s) 202
SinI GGWCC 3 cut(s) 314, 561, 1197
SlaI CTCGAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 2 cut(s) 62, 202
SmoI CTYRAG 2 cut(s) 62, 202
SpeI ACTAGT 2 cut(s) 175, 866
Sse9I AATT 9 cut(s) 37, 308, 394, 567, 899, 921, 1182, 1236, 1275
SsiI CCGC 4 cut(s) 269, 886, 1070, 1178
SspI AATATT 1 cut(s) 1160
SspMI CTAG 4 cut(s) 114, 176, 867, 1151
StyD4I CCNGG 2 cut(s) 576, 797
StyI CCWWGG 1 cut(s) 1200
TaaI ACNGT 2 cut(s) 543, 1189
TaqI TCGA 6 cut(s) 182, 203, 304, 724, 730, 803
TaqII GACCGA 1 cut(s) 302
TasI AATT 9 cut(s) 37, 308, 394, 567, 899, 921, 1182, 1236, 1275
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 5 cut(s) 69, 90, 816, 902, 1282
Tru9I TTAA 5 cut(s) 69, 90, 816, 902, 1282
TscAI CASTG 1 cut(s) 1194
TseFI GTSAC 3 cut(s) 141, 515, 787
TseI GCWGC 2 cut(s) 437, 935
Tsp45I GTSAC 3 cut(s) 141, 515, 787
TspDTI ATGAA 9 cut(s) 69, 126, 380, 406, 416, 537, 727, 865, 1077
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 1 cut(s) 1194
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 3 cut(s) 314, 561, 1197
XapI RAATTY 3 cut(s) 37, 308, 1236
XceI RCATGY 3 cut(s) 508, 535, 1148
XhoI CTCGAG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 4 cut(s) 114, 176, 867, 1151
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.