AT4G04470

Peroxisomal membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011859
Physical Location & Seq
Reverse (-)
2227661 .. 2230485
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04470.1

Sequence Viewer

Length: 573 bp
ATGGGATCTTCACCACCGAAGAAGACGACTCTGCAACGGTACTTGTCACAGCTTCAACAACATCCTTTAAGAACAAAGGCAATAACTGCTGGAGTTTTGTCTGGTGTTAGCGATGTTGTATCACAGAAGCTCTCTGGCATACAGAAGATTCAGCTGAGAAGGGTTCTTCTCAAAGTGATATTTGCTGGTGGGTTTCTTGGACCAGCAGGGCATTTCTTTCATACATATTTAGATAAGTTTTTTAAAGGGAAGAAGGATACACAGACTGTTGCAAAGAAGGTAATTCTGGAGCAATTGACATTGTCACCATTGAACCATTTGCTTTTCATGATCTATTATGGAGTAGTCATAGAAAGAACTCCCTGGACCCTTGTTAGAGAAAGGATCAAGAAGACTTATCCAACGGTCCAGCTTACTGCATGGACGTTTTTCCCGGTGGTGGGATGGATTAACTACAAGTATGTGCCACTGCACTTCCGGGTCATCTTGCACAGCCTGGTCGCATTCTTTTGGGGAATTTTCCTAACCCTGCGAGCGAGGTCAATGACACTAGCTTTGGCAAAGGCTAAGTGA

Protein Analysis

190

Amino Acids

21.72

Weight (kDa)

10.65

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 116 - 175 8.1e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04470 AT4G04470
fragaria_vesca FvH4_3g01800 FvH4_3g01800
malus_domestica MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis pycom05g31690 pycom10g27430
rosa_chinensis RchiOBHm_Chr5g0002631
rosa_laevigata RLG00000031048
rosa_multiflora Rmu_sc0009084.1_g000010
rosa_roxburghii Rroxscaffold_1G00073230
rosa_rugosa Rorug04G0397900
rosa_samantha Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana Rw5G001970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 13, 392
AcsI RAATTY 1 cut(s) 516
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 439, 440
AgsI TTSAA 2 cut(s) 56, 313
AjnI CCWGG 2 cut(s) 362, 495
AluBI AGCT 5 cut(s) 52, 130, 154, 412, 554
AluI AGCT 5 cut(s) 52, 130, 154, 412, 554
AlwI GGATC 2 cut(s) 13, 392
ApoI RAATTY 1 cut(s) 516
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AspS9I GGNCC 3 cut(s) 200, 366, 406
AsuC2I CCSGG 2 cut(s) 434, 479
AsuHPI GGTGA 2 cut(s) 3, 297
AvaII GGWCC 3 cut(s) 200, 366, 406
BbsI GAAGAC 2 cut(s) 29, 398
BccI CCATC 1 cut(s) 438
BciT130I CCWGG 2 cut(s) 364, 497
BciVI GTATCC 1 cut(s) 250
BcnI CCSGG 2 cut(s) 434, 479
BfaI CTAG 1 cut(s) 551
BfuI GTATCC 1 cut(s) 250
Bme1390I CCNGG 4 cut(s) 364, 434, 479, 497
Bme18I GGWCC 3 cut(s) 200, 366, 406
BmgT120I GGNCC 3 cut(s) 200, 366, 406
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 4 cut(s) 364, 434, 479, 497
BpiI GAAGAC 2 cut(s) 29, 398
BpmI CTGGAG 2 cut(s) 111, 308
BpuMI CCSGG 2 cut(s) 434, 479
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 440
BseBI CCWGG 2 cut(s) 364, 497
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 61, 449
BseLI CCNNNNNNNGG 2 cut(s) 439, 440
BseMII CTCAG 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 455
BsiSI CCGG 2 cut(s) 434, 478
BslI CCNNNNNNNGG 2 cut(s) 439, 440
BsmI GAATGC 1 cut(s) 503
Bsp143I GATC 3 cut(s) 5, 330, 384
BspCNI CTCAG 1 cut(s) 147
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 2 cut(s) 13, 392
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 3 cut(s) 5, 330, 384
Bst2UI CCWGG 2 cut(s) 364, 497
Bst4CI ACNGT 3 cut(s) 39, 268, 406
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 155, 567
BstF5I GGATG 2 cut(s) 61, 449
BstKTI GATC 3 cut(s) 8, 333, 387
BstMBI GATC 3 cut(s) 5, 330, 384
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 2 cut(s) 364, 497
BstSCI CCNGG 4 cut(s) 362, 432, 477, 495
BstV2I GAAGAC 2 cut(s) 29, 398
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 250
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 61, 449
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 534
CciI TCATGA 1 cut(s) 327
Cfr13I GGNCC 3 cut(s) 200, 366, 406
Csp6I GTAC 1 cut(s) 40
CviAII CATG 2 cut(s) 328, 420
CviJI RGCY 7 cut(s) 52, 130, 154, 412, 495, 554, 566
CviKI_1 RGCY 7 cut(s) 52, 130, 154, 412, 495, 554, 566
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 155, 567
DpnI GATC 3 cut(s) 7, 332, 386
DpnII GATC 3 cut(s) 5, 330, 384
DraI TTTAAA 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 200, 366, 406
EcoRII CCWGG 2 cut(s) 362, 495
FaeI CATG 2 cut(s) 331, 423
FaiI YATR 8 cut(s) 140, 222, 226, 329, 339, 350, 421, 462
FatI CATG 2 cut(s) 327, 419
FokI GGATG 2 cut(s) 48, 456
FspBI CTAG 1 cut(s) 551
GsuI CTGGAG 2 cut(s) 111, 308
HapII CCGG 2 cut(s) 434, 478
Hin1II CATG 2 cut(s) 331, 423
HinfI GANTC 2 cut(s) 28, 148
HpaII CCGG 2 cut(s) 434, 478
HphI GGTGA 2 cut(s) 3, 297
Hpy188III TCNNGA 3 cut(s) 287, 328, 388
HpyAV CCTTC 3 cut(s) 153, 247, 271
HpyCH4III ACNGT 3 cut(s) 39, 268, 406
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 34, 272, 419, 472, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 155, 567
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 2 cut(s) 331, 423
Kzo9I GATC 3 cut(s) 5, 330, 384
LmnI GCTCC 1 cut(s) 289
MaeI CTAG 1 cut(s) 551
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 2 cut(s) 45, 303
MalI GATC 3 cut(s) 7, 332, 386
MboI GATC 3 cut(s) 5, 330, 384
MboII GAAGA 6 cut(s) 31, 34, 157, 158, 262, 403
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 1 cut(s) 5
MluCI AATT 3 cut(s) 282, 293, 516
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 1 cut(s) 531
MseI TTAA 3 cut(s) 68, 243, 450
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 2 cut(s) 434, 478
MspR9I CCNGG 4 cut(s) 364, 434, 479, 497
MunI CAATTG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 2 cut(s) 364, 497
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 2 cut(s) 434, 479
NdeII GATC 3 cut(s) 5, 330, 384
NlaIII CATG 2 cut(s) 331, 423
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 2 cut(s) 45, 303
PagI TCATGA 1 cut(s) 327
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 148
PflFI GACNNNGTC 1 cut(s) 301
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 2 cut(s) 362, 495
PspGI CCWGG 2 cut(s) 362, 495
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 3 cut(s) 200, 366, 406
PsuI RGATCY 1 cut(s) 5
PsyI GACNNNGTC 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 3 cut(s) 68, 243, 450
Sau3AI GATC 3 cut(s) 5, 330, 384
Sau96I GGNCC 3 cut(s) 200, 366, 406
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 4 cut(s) 364, 434, 479, 497
SetI ASST 8 cut(s) 54, 132, 156, 282, 414, 428, 542, 556
SinI GGWCC 3 cut(s) 200, 366, 406
Sse9I AATT 3 cut(s) 282, 293, 516
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 4 cut(s) 362, 432, 477, 495
TaaI ACNGT 3 cut(s) 39, 268, 406
TaiI ACGT 1 cut(s) 428
TasI AATT 3 cut(s) 282, 293, 516
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 3 cut(s) 68, 243, 450
Tru9I TTAA 3 cut(s) 68, 243, 450
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 45, 303
Tsp45I GTSAC 2 cut(s) 45, 303
TspDTI ATGAA 2 cut(s) 209, 316
TspRI CASTG 1 cut(s) 474
Tth111I GACNNNGTC 1 cut(s) 301
VpaK11BI GGWCC 3 cut(s) 200, 366, 406
XapI RAATTY 1 cut(s) 516
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.