Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011859

Physical Location & Seq

Genomic Coordinates Forward (+)

56416852 .. 56418633

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0397900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGGTGATGGGGTTTTCATTGCATCTGTTGCTTCTATTTGTTCACTTGGCTACATGTTCTTCGGGGCAAACATTCCCCTATATGACTTCAAATGTCGAAGAAGTATCCGGTAGGTCCTTCGACTACATTGTGGTCGGCGGAGGCGCTGCCGGCTGCCCCCTAGCTGCAACTTTGTCTGAGAAATTCTCAGTGCTGTTGGTGGAACGAGGTGGCTCGCCTTACGGAGACCCCTACATCTTAGAGTTGAAGTACTACGGATACCCATTTCTCGTAAGTGATGAATATACATCAGCTGCACAAAGGTTTGTCTCCACAGATGGTGTCCCCAATTTCAGAGGAAGAGTGCTAGGAGGATCAGCTGCTATCAATGGTGGGTATTACGGCAGAGCAAGTAAGGATTTTGTCAAAAAGGTTGGTTGGGATAATGAGGAAGTAAGGGATGCTTATGAATGGGTGGAATCTAGAATCATCTCTAAACCTGATCATTTGACTCCATGGTCGCATGCTACTGCGTTCAGCTTTGTTGAAGCTGGAATTCTCCCCTATAATGGTTTCAGTTTGGAGCATATTCAGGGAACAAAAATTGGTGCTACTTCGTTCGATAACAAGGGAAGAAGACACTTACCAGCTGATCTTCTACCGGCAGGAAATCCAAGCAAGATCACAGTTCTCTTGAATGCAACTGTAGACAAAGTTATCTTTCAAAGAACTCGTACCAGAGATGAGAAGATAGCTCGAGGTATAAGATTCATCAAGAGCGATGGCAGCTCAAACCAGACTTATGAAGCTTACCTCAACCAGCCAGACAACTCGGGTTCATGGGGTGATGTGATACTATCAGCAGGAGCTTTAGGCAGCCCTCAGATTTTGTTGTTAAGTGGCATTGGCCCTCAACAACACCTAAAAAACTTTGGAATCCCGCTCGTACTCAACTTGAAGGGAGTAGGAGAAGGAATGCAAGACAATGCTGCTATTGAACTCTTCGTCAACTACAACCCACAAAATCCAACACCAGAACATTCCAAAGCTGCTGGTATAGCAGATGACTTCAAAATCATAACCGAGGCAGGAATCGTACCTATTAGCTTGAATGGAACAACTGTCAGCTATTTCATTGGCAAAATTGCCTTCCCAGAATCCGTAGGGAAGCTTGAACTCAACAGCACTGACCCAAGAGCAAACCCATCAGTGACATTCAACTACCTATCAACCGAGAAAGACTTGGCAGAATGTGTGAAGATGACCCAGCTGCTTGAGCTAGCTTTAAGGTCCAAATCAATTGCTTCCTTCGTGGGTTCGAATGAATACCGAAACAAGCCGATGCCTACTGAAGACGAGCTCCAGGAACTCTGCAAGACGACTGTCGGTACCTTCTACCACTACCATGGTGGTTGCACTGTGGGGTCAGTGGTCGACAAGAATTATAGGGTTTATGGTGTTAAGGGATTGAGAGTGATCGATGGGTCAACCTTCCTGGACTCACCAGGCACAAACCCAATGGCCACTGTGCTGATGCTTGGAAGATACCAAGGGCTCAAAATTCTTGAAGAAAGAAAAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

521

Amino Acids

56.75

Weight (kDa)

6.24

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_N	PF00732	40 - 321	2.8e-14	GMC oxidoreductase
GMC_oxred_C	PF05199	378 - 507	4.7e-29	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04470 AT4G04470
fragaria_vesca	FvH4_3g01800 FvH4_3g01800
malus_domestica	MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica	Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis	pycom05g31690 pycom10g27430
rosa_chinensis	RchiOBHm_Chr5g0002631
rosa_laevigata	RLG00000031048
rosa_multiflora	Rmu_sc0009084.1_g000010
rosa_roxburghii	Rroxscaffold_1G00073230
rosa_rugosa	Rorug04G0397900
rosa_samantha	Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana	Rw5G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	496
Acc65I	GGTACC	1 cut(s)	1367
AccB1I	GGYRCC	1 cut(s)	1367
AccBSI	CCGCTC	1 cut(s)	922
AccI	GTMKAC	2 cut(s)	687, 1413
AciI	CCGC	2 cut(s)	138, 920
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	1500
AcsI	RAATTY	3 cut(s)	182, 534, 1539
AcuI	CTGAAG	1 cut(s)	1350
AfaI	GTAC	5 cut(s)	251, 715, 927, 1077, 1369
AfiI	CCNNNNNNNGG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	53
AjnI	CCWGG	3 cut(s)	1341, 1473, 1483
Alw21I	GWGCWC	1 cut(s)	1341
Alw26I	GTCTC	2 cut(s)	219, 313
AlwI	GGATC	1 cut(s)	361
Ama87I	CYCGRG	2 cut(s)	735, 811
AoxI	GGCC	2 cut(s)	886, 1500
ApoI	RAATTY	3 cut(s)	182, 534, 1539
Asp718I	GGTACC	1 cut(s)	1367
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	114, 887, 1269
AsuHPI	GGTGA	3 cut(s)	16, 836, 1473
AsuII	TTCGAA	1 cut(s)	1298
AsuNHI	GCTAGC	1 cut(s)	1258
AvaI	CYCGRG	2 cut(s)	735, 811
AvaII	GGWCC	2 cut(s)	114, 1269
BalI	TGGCCA	1 cut(s)	1502
BanI	GGYRCC	1 cut(s)	1367
BanII	GRGCYC	2 cut(s)	1341, 1536
BbsI	GAAGAC	2 cut(s)	622, 1338
Bbv12I	GWGCWC	1 cut(s)	1341
BccI	CCATC	4 cut(s)	311, 755, 1192, 1454
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	3 cut(s)	1343, 1475, 1485
BciVI	GTATCC	2 cut(s)	115, 251
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	2 cut(s)	219, 313
BfaI	CTAG	4 cut(s)	161, 347, 462, 1259
BfmI	CTRYAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	147
BfuI	GTATCC	2 cut(s)	115, 251
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	3 cut(s)	1343, 1475, 1485
Bme18I	GGWCC	2 cut(s)	114, 1269
BmeT110I	CYCGRG	2 cut(s)	735, 811
BmgT120I	GGNCC	3 cut(s)	114, 887, 1269
BmiI	GGNNCC	1 cut(s)	1369
BmrFI	CCNGG	3 cut(s)	1343, 1475, 1485
BmsI	GCATC	4 cut(s)	31, 430, 1311, 1503
BmtI	GCTAGC	1 cut(s)	1262
BoxI	GACNNNNGTC	1 cut(s)	1361
BpiI	GAAGAC	2 cut(s)	622, 1338
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	1325
Bpu14I	TTCGAA	1 cut(s)	1298
BpuEI	CTTGAG	1 cut(s)	1274
Bsa29I	ATCGAT	1 cut(s)	1458
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	4 cut(s)	494, 1062, 1384, 1528
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse118I	RCCGGY	2 cut(s)	149, 640
Bse3DI	GCAATG	1 cut(s)	17
BseBI	CCWGG	3 cut(s)	1343, 1475, 1485
BseCI	ATCGAT	1 cut(s)	1458
BseDI	CCNNGG	4 cut(s)	494, 1062, 1384, 1528
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	3 cut(s)	168, 201, 875
BseYI	CCCAGC	1 cut(s)	1245
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	888, 1502
BshNI	GGYRCC	1 cut(s)	1367
BshVI	ATCGAT	1 cut(s)	1458
BsiHKAI	GWGCWC	1 cut(s)	1341
BsiHKCI	CYCGRG	2 cut(s)	735, 811
BsiSI	CCGG	3 cut(s)	108, 150, 641
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	2 cut(s)	219, 313
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	2 cut(s)	682, 960
BsnI	GGCC	2 cut(s)	888, 1502
Bso31I	GGTCTC	1 cut(s)	219
BsoBI	CYCGRG	2 cut(s)	735, 811
Bsp119I	TTCGAA	1 cut(s)	1298
Bsp1286I	GDGCHC	2 cut(s)	1341, 1536
Bsp143I	GATC	5 cut(s)	353, 481, 631, 660, 1455
Bsp19I	CCATGG	2 cut(s)	494, 1384
BspACI	CCGC	2 cut(s)	138, 920
BspANI	GGCC	2 cut(s)	888, 1502
BspCNI	CTCAG	3 cut(s)	169, 200, 874
BspDI	ATCGAT	1 cut(s)	1458
BspLI	GGNNCC	1 cut(s)	1369
BspOI	GCTAGC	1 cut(s)	1262
BspPI	GGATC	1 cut(s)	361
BspT104I	TTCGAA	1 cut(s)	1298
BspT107I	GGYRCC	1 cut(s)	1367
BspTNI	GGTCTC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	922
BsrDI	GCAATG	1 cut(s)	17
BsrFI	RCCGGY	2 cut(s)	149, 640
BssAI	RCCGGY	2 cut(s)	149, 640
BssECI	CCNNGG	4 cut(s)	494, 1062, 1384, 1528
BssMI	GATC	5 cut(s)	353, 481, 631, 660, 1455
BssT1I	CCWWGG	3 cut(s)	494, 1384, 1528
Bst2UI	CCWGG	3 cut(s)	1343, 1475, 1485
Bst4CI	ACNGT	6 cut(s)	667, 685, 1102, 1363, 1399, 1507
Bst6I	CTCTTC	2 cut(s)	334, 986
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	1298
BstC8I	GCNNGC	4 cut(s)	151, 215, 504, 1260
BstDEI	CTNAG	4 cut(s)	177, 187, 238, 861
BstDSI	CCRYGG	2 cut(s)	494, 1384
BstF5I	GGATG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	5 cut(s)	356, 484, 634, 663, 1458
BstMAI	GTCTC	2 cut(s)	219, 313
BstMBI	GATC	5 cut(s)	353, 481, 631, 660, 1455
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 150, 765, 1037, 1255
BstNI	CCWGG	3 cut(s)	1343, 1475, 1485
BstNSI	RCATGY	2 cut(s)	57, 506
BstPAI	GACNNNNGTC	1 cut(s)	1361
BstSCI	CCNGG	3 cut(s)	1341, 1473, 1483
BstSFI	CTRYAG	1 cut(s)	684
BstV2I	GAAGAC	2 cut(s)	622, 1338
BstXI	CCANNNNNNTGG	1 cut(s)	1385
Bsu15I	ATCGAT	1 cut(s)	1458
BsuI	GTATCC	2 cut(s)	115, 251
BsuRI	GGCC	2 cut(s)	888, 1502
BsuTUI	ATCGAT	1 cut(s)	1458
BtgI	CCRYGG	2 cut(s)	494, 1384
BtgZI	GCGATG	1 cut(s)	774
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	6 cut(s)	195, 1164, 1194, 1395, 1413, 1503
Cac8I	GCNNGC	4 cut(s)	151, 215, 504, 1260
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	2 cut(s)	149, 640
Cfr13I	GGNCC	3 cut(s)	114, 887, 1269
ClaI	ATCGAT	1 cut(s)	1458
Csp6I	GTAC	5 cut(s)	250, 714, 926, 1076, 1368
CviAII	CATG	5 cut(s)	54, 495, 503, 819, 1385
CviQI	GTAC	5 cut(s)	250, 714, 926, 1076, 1368
DdeI	CTNAG	4 cut(s)	177, 187, 238, 861
DpnI	GATC	5 cut(s)	355, 483, 633, 662, 1457
DpnII	GATC	5 cut(s)	353, 481, 631, 660, 1455
DrdI	GACNNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	1500
Eam1104I	CTCTTC	2 cut(s)	334, 986
EarI	CTCTTC	2 cut(s)	334, 986
EciI	GGCGGA	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	1339
Eco130I	CCWWGG	3 cut(s)	494, 1384, 1528
Eco24I	GRGCYC	2 cut(s)	1341, 1536
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	114, 1269
Eco53kI	GAGCTC	1 cut(s)	1339
Eco57I	CTGAAG	1 cut(s)	1350
Eco88I	CYCGRG	2 cut(s)	735, 811
EcoICRI	GAGCTC	1 cut(s)	1339
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	534
EcoRII	CCWGG	3 cut(s)	1341, 1473, 1483
EcoT14I	CCWWGG	3 cut(s)	494, 1384, 1528
EcoT38I	GRGCYC	2 cut(s)	1341, 1536
ErhI	CCWWGG	3 cut(s)	494, 1384, 1528
FaeI	CATG	5 cut(s)	57, 498, 506, 822, 1388
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	5 cut(s)	53, 494, 502, 818, 1384
FauI	CCCGC	1 cut(s)	927
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	2 cut(s)	687, 1413
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	2 cut(s)	1341, 1536
FspBI	CTAG	4 cut(s)	161, 347, 462, 1259
GlaI	GCGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	1249
GsuI	CTGGAG	1 cut(s)	1325
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	888, 1502
HapII	CCGG	3 cut(s)	108, 150, 641
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	5 cut(s)	57, 498, 506, 822, 1388
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	3 cut(s)	988, 1414, 1467
HindII	GTYRAC	3 cut(s)	988, 1414, 1467
HindIII	AAGCTT	2 cut(s)	786, 1148
HinfI	GANTC	8 cut(s)	458, 465, 490, 747, 915, 1071, 1136, 1478
HpaII	CCGG	3 cut(s)	108, 150, 641
HphI	GGTGA	3 cut(s)	16, 836, 1473
Hpy166II	GTNNAC	5 cut(s)	43, 688, 988, 1414, 1467
Hpy188I	TCNGA	3 cut(s)	178, 335, 864
Hpy188III	TCNNGA	4 cut(s)	462, 673, 754, 1544
Hpy8I	GTNNAC	5 cut(s)	43, 688, 988, 1414, 1467
HpyAV	CCTTC	7 cut(s)	127, 931, 944, 1138, 1297, 1381, 1480
HpyCH4III	ACNGT	6 cut(s)	667, 685, 1102, 1363, 1399, 1507
HpyCH4V	TGCA	7 cut(s)	22, 167, 296, 680, 958, 1353, 1395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 150, 765, 1037, 1255
HpyF3I	CTNAG	4 cut(s)	177, 187, 238, 861
Hsp92II	CATG	5 cut(s)	57, 498, 506, 822, 1388
HspAI	GCGC	1 cut(s)	144
KpnI	GGTACC	1 cut(s)	1371
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	353, 481, 631, 660, 1455
LmnI	GCTCC	3 cut(s)	562, 845, 1344
LweI	GCATC	4 cut(s)	31, 430, 1311, 1503
MaeI	CTAG	4 cut(s)	161, 347, 462, 1259
MaeIII	GTNAC	1 cut(s)	1189
MalI	GATC	5 cut(s)	355, 483, 633, 662, 1457
MbiI	CCGCTC	1 cut(s)	922
MboI	GATC	5 cut(s)	353, 481, 631, 660, 1455
MfeI	CAATTG	1 cut(s)	1278
MhlI	GDGCHC	2 cut(s)	1341, 1536
MlsI	TGGCCA	1 cut(s)	1502
MluCI	AATT	8 cut(s)	182, 328, 534, 582, 1122, 1278, 1420, 1539
MluNI	TGGCCA	1 cut(s)	1502
MlyI	GAGTC	2 cut(s)	484, 1472
MmeI	TCCRAC	1 cut(s)	1031
Mox20I	TGGCCA	1 cut(s)	1502
MroNI	GCCGGC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	1502
MseI	TTAA	4 cut(s)	875, 1265, 1440, 1564
MslI	CAYNNNNRTG	1 cut(s)	1383
Msp20I	TGGCCA	1 cut(s)	1502
MspA1I	CMGCKG	4 cut(s)	293, 359, 629, 1249
MspI	CCGG	3 cut(s)	108, 150, 641
MspR9I	CCNGG	3 cut(s)	1343, 1475, 1485
MunI	CAATTG	1 cut(s)	1278
Mva1269I	GAATGC	2 cut(s)	682, 960
MvaI	CCWGG	3 cut(s)	1343, 1475, 1485
MwoI	GCNNNNNNNGC	5 cut(s)	28, 150, 765, 1037, 1255
NaeI	GCCGGC	1 cut(s)	151
NcoI	CCATGG	2 cut(s)	494, 1384
NdeII	GATC	5 cut(s)	353, 481, 631, 660, 1455
NgoMIV	GCCGGC	1 cut(s)	149
NheI	GCTAGC	1 cut(s)	1258
NlaIII	CATG	5 cut(s)	57, 498, 506, 822, 1388
NlaIV	GGNNCC	1 cut(s)	1369
NmuCI	GTSAC	1 cut(s)	1189
NspI	RCATGY	2 cut(s)	57, 506
NspV	TTCGAA	1 cut(s)	1298
PaeI	GCATGC	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	735
PciI	ACATGT	1 cut(s)	53
PctI	GAATGC	2 cut(s)	682, 960
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	6 cut(s)	458, 465, 747, 915, 1071, 1136
PfoI	TCCNGGA	2 cut(s)	1341, 1473
PleI	GAGTC	2 cut(s)	484, 1472
PpsI	GAGTC	2 cut(s)	484, 1472
PpuMI	RGGWCCY	1 cut(s)	114
PscI	ACATGT	1 cut(s)	53
PshAI	GACNNNNGTC	1 cut(s)	1361
Psp124BI	GAGCTC	1 cut(s)	1341
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	3 cut(s)	1341, 1473, 1483
PspFI	CCCAGC	1 cut(s)	1245
PspGI	CCWGG	3 cut(s)	1341, 1473, 1483
PspN4I	GGNNCC	1 cut(s)	1369
PspPI	GGNCC	3 cut(s)	114, 887, 1269
PspPPI	RGGWCCY	1 cut(s)	114
PspXI	VCTCGAGB	1 cut(s)	735
PvuII	CAGCTG	4 cut(s)	293, 359, 629, 1249
RsaI	GTAC	5 cut(s)	251, 715, 927, 1077, 1369
RsaNI	GTAC	5 cut(s)	250, 714, 926, 1076, 1368
RseI	CAYNNNNRTG	1 cut(s)	1383
SacI	GAGCTC	1 cut(s)	1341
SalI	GTCGAC	1 cut(s)	1412
SaqAI	TTAA	4 cut(s)	875, 1265, 1440, 1564
Sau3AI	GATC	5 cut(s)	353, 481, 631, 660, 1455
Sau96I	GGNCC	3 cut(s)	114, 887, 1269
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	2 cut(s)	484, 1472
ScrFI	CCNGG	3 cut(s)	1343, 1475, 1485
SduI	GDGCHC	2 cut(s)	1341, 1536
SfaNI	GCATC	4 cut(s)	31, 430, 1311, 1503
SfcI	CTRYAG	1 cut(s)	684
Sfr274I	CTCGAG	1 cut(s)	735
SfuI	TTCGAA	1 cut(s)	1298
SinI	GGWCC	2 cut(s)	114, 1269
SlaI	CTCGAG	1 cut(s)	735
SmiMI	CAYNNNNRTG	1 cut(s)	1383
SmlI	CTYRAG	2 cut(s)	735, 1253
SmoI	CTYRAG	2 cut(s)	735, 1253
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	8 cut(s)	182, 328, 534, 582, 1122, 1278, 1420, 1539
SsiI	CCGC	2 cut(s)	138, 920
SspMI	CTAG	4 cut(s)	161, 347, 462, 1259
SstI	GAGCTC	1 cut(s)	1341
StyD4I	CCNGG	3 cut(s)	1341, 1473, 1483
StyI	CCWWGG	3 cut(s)	494, 1384, 1528
TaaI	ACNGT	6 cut(s)	667, 685, 1102, 1363, 1399, 1507
TaqI	TCGA	7 cut(s)	96, 120, 600, 736, 1298, 1413, 1458
TasI	AATT	8 cut(s)	182, 328, 534, 582, 1122, 1278, 1420, 1539
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	6 cut(s)	458, 465, 747, 915, 1071, 1136
Tru1I	TTAA	4 cut(s)	875, 1265, 1440, 1564
Tru9I	TTAA	4 cut(s)	875, 1265, 1440, 1564
TscAI	CASTG	6 cut(s)	195, 1171, 1194, 1402, 1413, 1510
TseFI	GTSAC	1 cut(s)	1189
Tsp45I	GTSAC	1 cut(s)	1189
TspDTI	ATGAA	8 cut(s)	6, 294, 462, 739, 798, 807, 1102, 1317
TspGWI	ACGGA	3 cut(s)	237, 270, 1129
TspRI	CASTG	6 cut(s)	195, 1171, 1194, 1402, 1413, 1510
VpaK11BI	GGWCC	2 cut(s)	114, 1269
XapI	RAATTY	3 cut(s)	182, 534, 1539
XbaI	TCTAGA	1 cut(s)	461
XceI	RCATGY	2 cut(s)	57, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1385
XhoI	CTCGAG	1 cut(s)	735
XmiI	GTMKAC	2 cut(s)	687, 1413
XspI	CTAG	4 cut(s)	161, 347, 462, 1259
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.