Rroxscaffold_1G00073230

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011859
Physical Location & Seq
Forward (+)
94170616 .. 94173854
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073230.1

Sequence Viewer

Length: 567 bp
ATGGGGTCGATAGCAAAGCAGTACTTGATTCAGCTTCAGCGACATCCATTGAGAACTAAGGCACTCACAGCTGGGTTTTTGTCAGCGATCAGTGATATAGCGTCTCAGAAGCTCACAGGGATTCAGAAACTTCAATTAAGAAGGCTTGTTCTCAAAGTGCTTTTTGGAGTTGCTTATCTTGGACCATTTGGGCATTTCCTGCATTTATTACTGGACAGAATTTTCAAGGGGAAGAAAGATAACAAAACTGTAGCCAAGAAGGTACTAGTGGAACAATTGACATCTTCTCCTTGGAATAACTTGATTTTCATGCTTTACTATGGGCTAGTTGTGGAGGGTAAATGTGAAAACGCAGGAAGACCATGGATGCATGTGAAAAGTAAAATTAAGAAGGACTTTCCGGCAGTGCAGTACACAGCATGGACGTTTTGGCCTGTTCTGGGGTGGATAAATCACCAGTATGTACCACTCCAATTTCGTGTCATCTTCCAGAGCTTGGTTGGGTTTTGCTGGGGAATATTCCTAAATTTACAAGCAAGATCTGTGGCGTTACCAAAGGCCAAGTGA

Protein Analysis

188

Amino Acids

21.51

Weight (kDa)

10.3

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 119 - 176 2.3e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04470 AT4G04470
fragaria_vesca FvH4_3g01800 FvH4_3g01800
malus_domestica MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis pycom05g31690 pycom10g27430
rosa_chinensis RchiOBHm_Chr5g0002631
rosa_laevigata RLG00000031048
rosa_multiflora Rmu_sc0009084.1_g000010
rosa_roxburghii Rroxscaffold_1G00073230
rosa_rugosa Rorug04G0397900
rosa_samantha Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana Rw5G001970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 496
AcsI RAATTY 2 cut(s) 219, 526
AcuI CTGAAG 1 cut(s) 20
AfaI GTAC 4 cut(s) 23, 264, 413, 465
AfiI CCNNNNNNNGG 2 cut(s) 440, 496
AgsI TTSAA 2 cut(s) 134, 226
AhlI ACTAGT 1 cut(s) 265
AluBI AGCT 4 cut(s) 34, 71, 112, 495
AluI AGCT 4 cut(s) 34, 71, 112, 495
Alw26I GTCTC 1 cut(s) 108
AoxI GGCC 2 cut(s) 431, 558
ApoI RAATTY 2 cut(s) 219, 526
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 446
AvaII GGWCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 108
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 2 cut(s) 266, 326
BfmI CTRYAG 1 cut(s) 249
BglII AGATCT 1 cut(s) 539
BmcAI AGTACT 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmsI GCATC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 290, 362
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 496
Bse1I ACTGG 2 cut(s) 216, 457
BseDI CCNNGG 2 cut(s) 290, 362
BseGI GGATG 2 cut(s) 43, 372
BseLI CCNNNNNNNGG 2 cut(s) 440, 496
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 216, 457
BseYI CCCAGC 2 cut(s) 71, 510
BsgI GTGCAG 1 cut(s) 428
BshFI GGCC 2 cut(s) 433, 560
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 440, 496
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 433, 560
Bsp143I GATC 2 cut(s) 87, 539
Bsp19I CCATGG 1 cut(s) 362
BspANI GGCC 2 cut(s) 433, 560
BspCNI CTCAG 1 cut(s) 118
BsrI ACTGG 2 cut(s) 216, 457
BssECI CCNNGG 2 cut(s) 290, 362
BssMI GATC 2 cut(s) 87, 539
BssT1I CCWWGG 2 cut(s) 290, 362
Bst4CI ACNGT 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 57, 105
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 43, 372
BstKTI GATC 2 cut(s) 90, 542
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 87, 539
BstMWI GCNNNNNNNGC 2 cut(s) 68, 199
BstNSI RCATGY 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
BsuRI GGCC 2 cut(s) 433, 560
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 43, 372
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 2 cut(s) 97, 411
Cfr13I GGNCC 1 cut(s) 182
CseI GACGC 1 cut(s) 90
Csp6I GTAC 4 cut(s) 22, 263, 412, 464
CspCI CAANNNNNGTGG 2 cut(s) 525, 560
CviAII CATG 4 cut(s) 310, 363, 371, 420
CviJI RGCY 9 cut(s) 34, 71, 112, 145, 254, 325, 433, 495, 560
CviKI_1 RGCY 9 cut(s) 34, 71, 112, 145, 254, 325, 433, 495, 560
CviQI GTAC 4 cut(s) 22, 263, 412, 464
DdeI CTNAG 2 cut(s) 57, 105
DpnI GATC 2 cut(s) 89, 541
DpnII GATC 2 cut(s) 87, 539
Eco130I CCWWGG 2 cut(s) 290, 362
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 290, 362
EcoT22I ATGCAT 1 cut(s) 372
ErhI CCWWGG 2 cut(s) 290, 362
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 4 cut(s) 313, 366, 374, 423
FaiI YATR 7 cut(s) 98, 311, 321, 364, 372, 421, 462
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 380, 412
FatI CATG 4 cut(s) 309, 362, 370, 419
FokI GGATG 2 cut(s) 30, 379
FspBI CTAG 2 cut(s) 266, 326
GsaI CCCAGC 2 cut(s) 75, 514
HaeIII GGCC 2 cut(s) 433, 560
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 90
Hin1II CATG 4 cut(s) 313, 366, 374, 423
HinfI GANTC 2 cut(s) 28, 121
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 108, 126
Hpy188III TCNNGA 1 cut(s) 490
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 135, 253, 385
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 3 cut(s) 202, 370, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 199
HpyF3I CTNAG 2 cut(s) 57, 105
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 4 cut(s) 313, 366, 374, 423
Kzo9I GATC 2 cut(s) 87, 539
LweI GCATC 1 cut(s) 357
MaeI CTAG 2 cut(s) 266, 326
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 549
MalI GATC 2 cut(s) 89, 541
MboI GATC 2 cut(s) 87, 539
MboII GAAGA 4 cut(s) 244, 276, 369, 478
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 1 cut(s) 539
MluCI AATT 6 cut(s) 134, 219, 275, 384, 473, 526
MnlI CCTC 1 cut(s) 328
Mph1103I ATGCAT 1 cut(s) 372
MseI TTAA 2 cut(s) 137, 387
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 401
MunI CAATTG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 68, 199
NcoI CCATGG 1 cut(s) 362
NdeII GATC 2 cut(s) 87, 539
NlaIII CATG 4 cut(s) 313, 366, 374, 423
NsiI ATGCAT 1 cut(s) 372
NspI RCATGY 1 cut(s) 374
PfeI GAWTC 2 cut(s) 28, 121
PflMI CCANNNNNTGG 1 cut(s) 496
PspFI CCCAGC 2 cut(s) 71, 510
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 4 cut(s) 23, 264, 413, 465
RsaNI GTAC 4 cut(s) 22, 263, 412, 464
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 2 cut(s) 137, 387
Sau3AI GATC 2 cut(s) 87, 539
Sau96I GGNCC 1 cut(s) 182
ScaI AGTACT 1 cut(s) 23
SetI ASST 6 cut(s) 36, 73, 114, 264, 428, 497
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 459
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 6 cut(s) 134, 219, 275, 384, 473, 526
SspI AATATT 1 cut(s) 519
SspMI CTAG 2 cut(s) 266, 326
StyI CCWWGG 2 cut(s) 290, 362
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 8
TasI AATT 6 cut(s) 134, 219, 275, 384, 473, 526
TatI WGTACW 2 cut(s) 21, 411
TfiI GAWTC 2 cut(s) 28, 121
Tru1I TTAA 2 cut(s) 137, 387
Tru9I TTAA 2 cut(s) 137, 387
TscAI CASTG 2 cut(s) 97, 411
TspDTI ATGAA 1 cut(s) 298
TspRI CASTG 2 cut(s) 97, 411
Van91I CCANNNNNTGG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 2 cut(s) 219, 526
XceI RCATGY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XspI CTAG 2 cut(s) 266, 326
ZrmI AGTACT 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.