FvH4_3g01800

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011859
Physical Location & Seq
Reverse (-)
927006 .. 930248
3243 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01800.t1

Sequence Viewer

Length: 561 bp
ATGGGTTCCATAGCAAAGAAGGGGTTCCAGCAGTACTTGATTCAGCTTCAGCGACATCCTTTAAGAACTAAGGCACTTACAGCTGGGGTTTTATCTGCAATCAGTGATATAGCGTCTCAGAAGCTCACGGGGATTCAGAAACTTCAATTAAGGCGGCTTGCTCTCAAAGTGCTTTTTGGAGTTGCTTATCTTGGACCATTTGGGCATTTCCTGCATTTAATACTGGATAAGATTTTCAAGGGGAAGAAAGATAATAAAACAGTAGCCAAGAAGGTACTAATGGAACAATTGACATCTTCTCCTTGGAATAACTTATTTTTCATGCTTTACTATGGGCTGGTTGTAGAGGGAAGACCATGGATGCAGGTGAAAAGTAAAATTAGGAAGGACTTTCCAACAGTTCAATACACAGCATGGACGTTCTGGCCTGTTCTGGGGTGGATAAATCACCAGTATGTGCCACTCCAATTCCGTGTCATCTTCCAGAGCTTGGTTGGGTTTTGCTGGGGAATATTCCTAAATTTACAAGCAAGATCTGTGAAGTTACCAAAGGCCAAATGA

Protein Analysis

187

Amino Acids

21.44

Weight (kDa)

10.48

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 114 - 174 6.1e-21 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04470 AT4G04470
fragaria_vesca FvH4_3g01800 FvH4_3g01800
malus_domestica MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis pycom05g31690 pycom10g27430
rosa_chinensis RchiOBHm_Chr5g0002631
rosa_laevigata RLG00000031048
rosa_multiflora Rmu_sc0009084.1_g000010
rosa_roxburghii Rroxscaffold_1G00073230
rosa_rugosa Rorug04G0397900
rosa_samantha Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana Rw5G001970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 490
AciI CCGC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 2 cut(s) 35, 276
AfiI CCNNNNNNNGG 2 cut(s) 434, 490
AgsI TTSAA 3 cut(s) 146, 238, 404
AluBI AGCT 4 cut(s) 46, 83, 124, 489
AluI AGCT 4 cut(s) 46, 83, 124, 489
Alw26I GTCTC 1 cut(s) 120
AoxI GGCC 2 cut(s) 425, 552
ApoI RAATTY 1 cut(s) 520
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 379, 440
AvaII GGWCC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 355
BglII AGATCT 1 cut(s) 533
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmcAI AGTACT 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 7, 26
BmsI GCATC 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 302, 356
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 490
Bse1I ACTGG 2 cut(s) 228, 451
BseDI CCNNGG 2 cut(s) 302, 356
BseGI GGATG 2 cut(s) 55, 366
BseLI CCNNNNNNNGG 2 cut(s) 434, 490
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 228, 451
BseYI CCCAGC 2 cut(s) 83, 504
BshFI GGCC 2 cut(s) 427, 554
BslI CCNNNNNNNGG 2 cut(s) 434, 490
BsmAI GTCTC 1 cut(s) 120
BsmBI CGTCTC 1 cut(s) 120
BsnI GGCC 2 cut(s) 427, 554
Bsp143I GATC 1 cut(s) 533
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 427, 554
BspCNI CTCAG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 7, 26
BspMI ACCTGC 1 cut(s) 355
BsrI ACTGG 2 cut(s) 228, 451
BssECI CCNNGG 2 cut(s) 302, 356
BssMI GATC 1 cut(s) 533
BssT1I CCWWGG 2 cut(s) 302, 356
Bst4CI ACNGT 2 cut(s) 262, 400
BstAPI GCANNNNNTGC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 69, 117
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 2 cut(s) 55, 366
BstKTI GATC 1 cut(s) 536
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 533
BstMWI GCNNNNNNNGC 2 cut(s) 80, 211
BstV2I GAAGAC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BsuRI GGCC 2 cut(s) 427, 554
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 2 cut(s) 55, 366
BtsIMutI CAGTG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 102
Csp6I GTAC 2 cut(s) 34, 275
CviAII CATG 3 cut(s) 322, 357, 414
CviJI RGCY 9 cut(s) 46, 83, 124, 157, 266, 337, 427, 489, 554
CviKI_1 RGCY 9 cut(s) 46, 83, 124, 157, 266, 337, 427, 489, 554
CviQI GTAC 2 cut(s) 34, 275
DdeI CTNAG 2 cut(s) 69, 117
DpnI GATC 1 cut(s) 535
DpnII GATC 1 cut(s) 533
Eco130I CCWWGG 2 cut(s) 302, 356
Eco47I GGWCC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 32
EcoT14I CCWWGG 2 cut(s) 302, 356
ErhI CCWWGG 2 cut(s) 302, 356
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 3 cut(s) 325, 360, 417
FaiI YATR 7 cut(s) 11, 110, 323, 333, 358, 415, 456
FatI CATG 3 cut(s) 321, 356, 413
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 2 cut(s) 42, 373
Fsp4HI GCNGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 155
GsaI CCCAGC 2 cut(s) 87, 508
HaeIII GGCC 2 cut(s) 427, 554
HgaI GACGC 1 cut(s) 102
Hin1II CATG 3 cut(s) 325, 360, 417
HinfI GANTC 2 cut(s) 40, 133
HphI GGTGA 2 cut(s) 379, 440
Hpy188I TCNGA 2 cut(s) 120, 138
Hpy188III TCNNGA 1 cut(s) 484
HpyAV CCTTC 3 cut(s) 13, 265, 379
HpyCH4III ACNGT 2 cut(s) 262, 400
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 3 cut(s) 98, 214, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 211
HpyF3I CTNAG 2 cut(s) 69, 117
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 3 cut(s) 325, 360, 417
Kzo9I GATC 1 cut(s) 533
LweI GCATC 1 cut(s) 351
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 543
MalI GATC 1 cut(s) 535
MboI GATC 1 cut(s) 533
MboII GAAGA 4 cut(s) 256, 288, 363, 472
MfeI CAATTG 1 cut(s) 287
MflI RGATCY 1 cut(s) 533
MluCI AATT 5 cut(s) 146, 287, 378, 467, 520
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 3 cut(s) 62, 149, 218
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 83
MunI CAATTG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 80, 211
NcoI CCATGG 1 cut(s) 356
NdeII GATC 1 cut(s) 533
NlaIII CATG 3 cut(s) 325, 360, 417
NlaIV GGNNCC 2 cut(s) 7, 26
PaqCI CACCTGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 40, 133
PflMI CCANNNNNTGG 1 cut(s) 490
PkrI GCNGC 1 cut(s) 156
PspFI CCCAGC 2 cut(s) 83, 504
PspN4I GGNNCC 2 cut(s) 7, 26
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 2 cut(s) 35, 276
RsaNI GTAC 2 cut(s) 34, 275
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 3 cut(s) 62, 149, 218
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 533
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 35
SetI ASST 7 cut(s) 48, 85, 126, 276, 369, 422, 491
SfaNI GCATC 1 cut(s) 351
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 5 cut(s) 146, 287, 378, 467, 520
SsiI CCGC 1 cut(s) 154
SspI AATATT 1 cut(s) 513
StyI CCWWGG 2 cut(s) 302, 356
TaaI ACNGT 2 cut(s) 262, 400
TaiI ACGT 1 cut(s) 422
TasI AATT 5 cut(s) 146, 287, 378, 467, 520
TatI WGTACW 1 cut(s) 33
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 40, 133
Tru1I TTAA 3 cut(s) 62, 149, 218
Tru9I TTAA 3 cut(s) 62, 149, 218
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.