Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011859

Physical Location & Seq

Genomic Coordinates Forward (+)

28387065 .. 28388923

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGACCTAACCCAACAGAAAATTGATTACACCCAATTATTCCTCTCAAAGTTGGAAATTCTGATGGGGTCGATTGCAAAGAAGGGGTTGCAGCAGTACTTGCTTCAGCTTCAGCATCATCCGCTCAGAACCAAGGCAATTACAGCGGGGGTTTTGTCAGCGATCAGTGACATAGTGTCGCAGAAGCTCACCGGCATTCAGAAACTTCAGATAAGGCGGCTCCTTCTCAAAGTGCTTCTAGGAGCTGTTTATCTTGGACCATTTGGGCATTTCCTGCATACCATACTAGATAAGATTTTCAAGGGGAAGAAGGATTCAAAAACAGTGCTGGTGGAACAGCTGACGGCTTCTCCCTGGAATAACTTGGTTTTCATGCTTTACTATGGGTTGGTTGTGGAGGGAAGACCTTGGATGCAAGTGAAAAGTAAAATCAAGACGGACTACCCAAAGGTTCAATACACATCATGGACGTTCTGGCCTGTTCTGGGGTGGATAAATCACCAGTATGTGCCACTGCACCTCCGTGTCATCTTCCACAGCTTGGTCGCTTTTGTCTGGGGAATTTTCCTAAACTTACAGGCAAGATCTGTGGCATTACCAAAAGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

204

Amino Acids

23.32

Weight (kDa)

10.09

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04470 AT4G04470
fragaria_vesca	FvH4_3g01800 FvH4_3g01800
malus_domestica	MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica	Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis	pycom05g31690 pycom10g27430
rosa_chinensis	RchiOBHm_Chr5g0002631
rosa_laevigata	RLG00000031048
rosa_multiflora	Rmu_sc0009084.1_g000010
rosa_roxburghii	Rroxscaffold_1G00073230
rosa_rugosa	Rorug04G0397900
rosa_samantha	Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana	Rw5G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	3 cut(s)	122, 146, 217
AcsI	RAATTY	2 cut(s)	57, 561
AcuI	CTGAAG	3 cut(s)	89, 95, 191
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	485, 541
AgsI	TTSAA	3 cut(s)	301, 318, 455
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	353
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	5 cut(s)	109, 187, 245, 340, 540
AluI	AGCT	5 cut(s)	109, 187, 245, 340, 540
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	57, 561
AspS9I	GGNCC	2 cut(s)	4, 257
AsuHPI	GGTGA	2 cut(s)	181, 491
AvaII	GGWCC	2 cut(s)	4, 257
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	355
BfaI	CTAG	2 cut(s)	239, 287
BglII	AGATCT	1 cut(s)	584
BisI	GCNGC	2 cut(s)	92, 218
BlsI	GCNGC	2 cut(s)	93, 219
BmcAI	AGTACT	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	2 cut(s)	4, 257
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	4, 257
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	2 cut(s)	124, 402
BpiI	GAAGAC	1 cut(s)	409
BsaJI	CCNNGG	3 cut(s)	132, 353, 407
BsaXI	ACNNNNNCTCC	4 cut(s)	334, 364, 504, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 541
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	3 cut(s)	132, 353, 407
BseGI	GGATG	2 cut(s)	118, 417
BseLI	CCNNNNNNNGG	2 cut(s)	485, 541
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	485, 541
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	478
Bsp143I	GATC	2 cut(s)	162, 584
BspACI	CCGC	3 cut(s)	122, 146, 217
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	132, 353, 407
BssMI	GATC	2 cut(s)	162, 584
BssT1I	CCWWGG	2 cut(s)	132, 407
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	325
BstAPI	GCANNNNNTGC	2 cut(s)	100, 274
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	2 cut(s)	118, 417
BstKTI	GATC	2 cut(s)	165, 587
BstMBI	GATC	2 cut(s)	162, 584
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 121, 143, 274
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	118, 417
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	3 cut(s)	172, 330, 512
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	4, 257
Csp6I	GTAC	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	2 cut(s)	373, 465
CviJI	RGCY	9 cut(s)	109, 187, 220, 245, 340, 347, 478, 540, 605
CviKI_1	RGCY	9 cut(s)	109, 187, 220, 245, 340, 347, 478, 540, 605
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	164, 586
DpnII	GATC	2 cut(s)	162, 584
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1105I	GACNNNNNGTC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	132, 407
Eco47I	GGWCC	2 cut(s)	4, 257
Eco57I	CTGAAG	3 cut(s)	89, 95, 191
EcoRII	CCWGG	1 cut(s)	353
EcoT14I	CCWWGG	2 cut(s)	132, 407
ErhI	CCWWGG	2 cut(s)	132, 407
FaeI	CATG	2 cut(s)	376, 468
FaiI	YATR	7 cut(s)	173, 279, 284, 374, 384, 466, 507
FatI	CATG	2 cut(s)	372, 464
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	92, 218
FokI	GGATG	2 cut(s)	105, 424
Fsp4HI	GCNGC	2 cut(s)	92, 218
FspBI	CTAG	2 cut(s)	239, 287
GluI	GCNGC	2 cut(s)	92, 218
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	2 cut(s)	376, 468
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	181, 491
Hpy188I	TCNGA	4 cut(s)	63, 128, 201, 210
Hpy188III	TCNNGA	1 cut(s)	433
HpyAV	CCTTC	3 cut(s)	76, 233, 304
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	5 cut(s)	77, 91, 277, 415, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 121, 143, 274
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	376, 468
Kzo9I	GATC	2 cut(s)	162, 584
LmnI	GCTCC	2 cut(s)	225, 242
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	124, 402
MaeI	CTAG	2 cut(s)	239, 287
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	164, 586
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	2 cut(s)	162, 584
MboII	GAAGA	3 cut(s)	319, 414, 523
MflI	RGATCY	1 cut(s)	584
MluCI	AATT	5 cut(s)	21, 35, 57, 138, 561
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	53, 391, 530
MslI	CAYNNNNRTG	2 cut(s)	504, 522
MspA1I	CMGCKG	2 cut(s)	146, 340
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	4 cut(s)	100, 121, 143, 274
NdeII	GATC	2 cut(s)	162, 584
NlaIII	CATG	2 cut(s)	376, 468
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	522
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	93, 219
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	2 cut(s)	4, 257
PsuI	RGATCY	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	2 cut(s)	504, 522
SatI	GCNGC	2 cut(s)	92, 218
Sau3AI	GATC	2 cut(s)	162, 584
Sau96I	GGNCC	2 cut(s)	4, 257
ScaI	AGTACT	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	124, 402
SinI	GGWCC	2 cut(s)	4, 257
SmiMI	CAYNNNNRTG	2 cut(s)	504, 522
Sse9I	AATT	5 cut(s)	21, 35, 57, 138, 561
SsiI	CCGC	3 cut(s)	122, 146, 217
SspMI	CTAG	2 cut(s)	239, 287
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	2 cut(s)	132, 407
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	71
TasI	AATT	5 cut(s)	21, 35, 57, 138, 561
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	3 cut(s)	172, 330, 519
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	361
TspGWI	ACGGA	2 cut(s)	452, 512
TspRI	CASTG	3 cut(s)	172, 330, 519
Van91I	CCANNNNNTGG	1 cut(s)	541
VpaK11BI	GGWCC	2 cut(s)	4, 257
XapI	RAATTY	2 cut(s)	57, 561
XspI	CTAG	2 cut(s)	239, 287
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.