Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011859

Physical Location & Seq

Genomic Coordinates Reverse (-)

849802 .. 852817

Gene Structure 3016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGTCGATTGCAAAGAAGGGGTTGCAGCAGTACTTGCTTCAGCTTCAGCATCATCCTCTCAGAACTAAGGCAATTACAGCTGGGGTTTTGTCAGCGATCAGTGACATAGTGTCTCAGAAGCTCACCGGCATCCAGAAACTTCAGTTAAGACGGCTGCTTCTCAAAGTGCTTTTTGGAGCTGTTTATCTTGGACCATTTGGGCATTTCCTGCATTTAATACTAGATAAGATTTTCAAGGGGAAGAAGGATTCAAAAACAGTAGCCAAGAAGGTGCTGGTGGAACAGTTGACATCTTCTCCTTGGAATAACTTGCTTTTCATGCTTTACTATGGTTTGGTTGTGGAGGGAAGACCTTGGATGCATGTAAAGAATAAAATTAAGAAGGACTACCCGTCAGTGCAGTACACATCATGGACGTTCTGGCCTGTTCTGGGTTGGATAAATCACCAGTATGTCCCTCTCCATCTCCGTGTCGTCTTCCACAGCTTGGTCGCTTTTGGCTGGGGAATTTTCCTCAACTTACAAGCAAGATCTGTGGCATTACCAAAGGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

187

Amino Acids

21.27

Weight (kDa)

10.34

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04470 AT4G04470
fragaria_vesca	FvH4_3g01800 FvH4_3g01800
malus_domestica	MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica	Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis	pycom05g31690 pycom10g27430
rosa_chinensis	RchiOBHm_Chr5g0002631
rosa_laevigata	RLG00000031048
rosa_multiflora	Rmu_sc0009084.1_g000010
rosa_roxburghii	Rroxscaffold_1G00073230
rosa_rugosa	Rorug04G0397900
rosa_samantha	Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana	Rw5G001970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	3 cut(s)	26, 32, 128
AfaI	GTAC	2 cut(s)	35, 407
AfiI	CCNNNNNNNGG	2 cut(s)	434, 490
AgsI	TTSAA	2 cut(s)	238, 255
AhdI	GACNNNNNGTC	2 cut(s)	112, 394
AluBI	AGCT	5 cut(s)	46, 83, 124, 182, 489
AluI	AGCT	5 cut(s)	46, 83, 124, 182, 489
Alw26I	GTCTC	1 cut(s)	120
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	28, 157
ApoI	RAATTY	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	118, 440
AvaII	GGWCC	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	358, 472
BbvI	GCAGC	2 cut(s)	40, 144
BccI	CCATC	1 cut(s)	474
BceAI	ACGGC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	2 cut(s)	29, 158
BlsI	GCNGC	2 cut(s)	30, 159
BmcAI	AGTACT	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	194
BmeRI	GACNNNNNGTC	2 cut(s)	112, 394
BmgT120I	GGNCC	1 cut(s)	194
BmsI	GCATC	3 cut(s)	61, 141, 351
BpiI	GAAGAC	2 cut(s)	358, 472
BsaJI	CCNNGG	2 cut(s)	302, 356
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 490
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	302, 356
BseGI	GGATG	3 cut(s)	55, 132, 366
BseLI	CCNNNNNNNGG	2 cut(s)	434, 490
BseMII	CTCAG	2 cut(s)	76, 131
BseNI	ACTGG	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	40, 144
BseYI	CCCAGC	2 cut(s)	83, 504
BsgI	GTGCAG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	434, 490
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	99, 533
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	75, 130
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	302, 356
BssMI	GATC	2 cut(s)	99, 533
BssT1I	CCWWGG	2 cut(s)	302, 356
Bst4CI	ACNGT	2 cut(s)	262, 288
BstAPI	GCANNNNNTGC	2 cut(s)	37, 211
BstDEI	CTNAG	4 cut(s)	62, 69, 117, 555
BstF5I	GGATG	3 cut(s)	55, 132, 366
BstKTI	GATC	2 cut(s)	102, 536
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	99, 533
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 80, 211, 322
BstNSI	RCATGY	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	40, 144
BstV2I	GAAGAC	2 cut(s)	358, 472
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	427
BtsCI	GGATG	3 cut(s)	55, 132, 366
BtsIMutI	CAGTG	2 cut(s)	109, 405
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	34, 406
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviAII	CATG	3 cut(s)	322, 365, 414
CviQI	GTAC	2 cut(s)	34, 406
DdeI	CTNAG	4 cut(s)	62, 69, 117, 555
DpnI	GATC	2 cut(s)	101, 535
DpnII	GATC	2 cut(s)	99, 533
DriI	GACNNNNNGTC	2 cut(s)	112, 394
Eam1105I	GACNNNNNGTC	2 cut(s)	112, 394
Eco130I	CCWWGG	2 cut(s)	302, 356
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	3 cut(s)	26, 32, 128
EcoT14I	CCWWGG	2 cut(s)	302, 356
EcoT22I	ATGCAT	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	302, 356
FaeI	CATG	3 cut(s)	325, 368, 417
FaiI	YATR	6 cut(s)	110, 323, 333, 366, 415, 456
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	3 cut(s)	321, 364, 413
Fnu4HI	GCNGC	2 cut(s)	29, 158
FokI	GGATG	3 cut(s)	42, 119, 373
Fsp4HI	GCNGC	2 cut(s)	29, 158
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	2 cut(s)	29, 158
GsaI	CCCAGC	2 cut(s)	87, 508
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	325, 368, 417
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	118, 440
Hpy166II	GTNNAC	2 cut(s)	291, 408
Hpy188I	TCNGA	2 cut(s)	65, 120
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	291, 408
HpyAV	CCTTC	4 cut(s)	13, 241, 265, 379
HpyCH4III	ACNGT	2 cut(s)	262, 288
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	5 cut(s)	14, 28, 214, 364, 403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 80, 211, 322
HpyF3I	CTNAG	4 cut(s)	62, 69, 117, 555
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	3 cut(s)	325, 368, 417
Kzo9I	GATC	2 cut(s)	99, 533
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	2 cut(s)	40, 144
LweI	GCATC	3 cut(s)	61, 141, 351
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	101, 535
MboI	GATC	2 cut(s)	99, 533
MboII	GAAGA	4 cut(s)	256, 288, 363, 472
MflI	RGATCY	1 cut(s)	533
MluCI	AATT	3 cut(s)	75, 378, 510
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	4 cut(s)	69, 340, 471, 527
Mph1103I	ATGCAT	1 cut(s)	366
MseI	TTAA	3 cut(s)	149, 218, 381
MslI	CAYNNNNRTG	2 cut(s)	453, 471
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	4 cut(s)	37, 80, 211, 322
NdeII	GATC	2 cut(s)	99, 533
NlaIII	CATG	3 cut(s)	325, 368, 417
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	30, 159
PspFI	CCCAGC	2 cut(s)	83, 504
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	35, 407
RsaNI	GTAC	2 cut(s)	34, 406
RseI	CAYNNNNRTG	2 cut(s)	453, 471
SaqAI	TTAA	3 cut(s)	149, 218, 381
SatI	GCNGC	2 cut(s)	29, 158
Sau3AI	GATC	2 cut(s)	99, 533
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	35
SetI	ASST	8 cut(s)	48, 85, 126, 184, 276, 358, 422, 491
SfaNI	GCATC	3 cut(s)	61, 141, 351
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	453, 471
Sse9I	AATT	3 cut(s)	75, 378, 510
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	302, 356
TaaI	ACNGT	2 cut(s)	262, 288
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	8
TasI	AATT	3 cut(s)	75, 378, 510
TatI	WGTACW	2 cut(s)	33, 405
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	149, 218, 381
Tru9I	TTAA	3 cut(s)	149, 218, 381
TscAI	CASTG	2 cut(s)	109, 405
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	28, 157
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	2 cut(s)	109, 405
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	510
XceI	RCATGY	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.