Rh5CG023400

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011859
Physical Location & Seq
Reverse (-)
1482604 .. 1486655
4052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG023400.1

Sequence Viewer

Length: 549 bp
ATGGGGTCGATAGCAAAGCAGTACTTGATTCAGCTTCAGCGACATCCATTGAGAACTAAGGCACTCACAGCTGGGTTTTTGTCAGCGATCAGTGATATAGCGTCTCAGAAGCTCACAGGGATTCAGAAACTTCAATTAAGAAGGCTTGTTCTCAAAGTGCTTTTTGGAGTTGCTTATCTTGGACCATTTGGGCATTTCCTGCATTTATTACTGGACAAAATTTTCAAGGGGAAGAAAGATAACAAAACTGTAGCCAAGAAGGTACTAGTGGAACAATTGACATCTTCTCCTTGGAATAACTTGATTTTCATGCTTTACTATGGGCTAGTTGTGGAGGGAAGACCATGGATACATGTGAAAAGTAAAATTAAGAAGGACTTTCCGGCAGTGCAGTACACAGCGTGGACGTTTTGGCCTGTTCTGGGGTGGATAAATCACCAGTATGTACCACTCCAATTTCGTGTCATCTTCCAGAGCTTGGTTGGGTTTTGCTGGGGAATTTTCCTAAATTTACAAGCAAGATCTGTGGCATTACCAAAGGCCAAGTGA

Protein Analysis

182

Amino Acids

20.86

Weight (kDa)

10.37

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 110 - 170 4.8e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04470 AT4G04470
fragaria_vesca FvH4_3g01800 FvH4_3g01800
malus_domestica MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis pycom05g31690 pycom10g27430
rosa_chinensis RchiOBHm_Chr5g0002631
rosa_laevigata RLG00000031048
rosa_multiflora Rmu_sc0009084.1_g000010
rosa_roxburghii Rroxscaffold_1G00073230
rosa_rugosa Rorug04G0397900
rosa_samantha Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana Rw5G001970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 478
AcsI RAATTY 3 cut(s) 219, 498, 508
AcuI CTGAAG 1 cut(s) 20
AdeI CACNNNGTG 1 cut(s) 402
AfaI GTAC 4 cut(s) 23, 264, 395, 447
AfiI CCNNNNNNNGG 2 cut(s) 422, 478
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 2 cut(s) 134, 226
AhlI ACTAGT 1 cut(s) 265
AluBI AGCT 4 cut(s) 34, 71, 112, 477
AluI AGCT 4 cut(s) 34, 71, 112, 477
Alw26I GTCTC 1 cut(s) 108
AoxI GGCC 2 cut(s) 413, 540
ApoI RAATTY 3 cut(s) 219, 498, 508
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 346
BciVI GTATCC 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 108
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 2 cut(s) 266, 326
BfmI CTRYAG 1 cut(s) 249
BfuI GTATCC 1 cut(s) 342
BglII AGATCT 1 cut(s) 521
BmcAI AGTACT 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 290, 344
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 478
Bse1I ACTGG 2 cut(s) 216, 439
BseDI CCNNGG 2 cut(s) 290, 344
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 422, 478
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 216, 439
BseYI CCCAGC 2 cut(s) 71, 492
BsgI GTGCAG 1 cut(s) 410
BshFI GGCC 2 cut(s) 415, 542
BsiSI CCGG 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 422, 478
BsmAI GTCTC 1 cut(s) 108
BsmBI CGTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 415, 542
Bsp143I GATC 2 cut(s) 87, 521
Bsp19I CCATGG 1 cut(s) 344
BspANI GGCC 2 cut(s) 415, 542
BspCNI CTCAG 1 cut(s) 118
BsrI ACTGG 2 cut(s) 216, 439
BssECI CCNNGG 2 cut(s) 290, 344
BssMI GATC 2 cut(s) 87, 521
BssT1I CCWWGG 2 cut(s) 290, 344
Bst4CI ACNGT 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 57, 105
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 2 cut(s) 90, 524
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 2 cut(s) 87, 521
BstMWI GCNNNNNNNGC 2 cut(s) 68, 199
BstNSI RCATGY 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 521
BstYI RGATCY 1 cut(s) 521
BsuI GTATCC 1 cut(s) 342
BsuRI GGCC 2 cut(s) 415, 542
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 97, 393
Cfr13I GGNCC 1 cut(s) 182
CseI GACGC 1 cut(s) 90
Csp6I GTAC 4 cut(s) 22, 263, 394, 446
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviAII CATG 3 cut(s) 310, 345, 353
CviJI RGCY 9 cut(s) 34, 71, 112, 145, 254, 325, 415, 477, 542
CviKI_1 RGCY 9 cut(s) 34, 71, 112, 145, 254, 325, 415, 477, 542
CviQI GTAC 4 cut(s) 22, 263, 394, 446
DdeI CTNAG 2 cut(s) 57, 105
DpnI GATC 2 cut(s) 89, 523
DpnII GATC 2 cut(s) 87, 521
DraIII CACNNNGTG 1 cut(s) 402
Eco130I CCWWGG 2 cut(s) 290, 344
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 290, 344
ErhI CCWWGG 2 cut(s) 290, 344
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 3 cut(s) 313, 348, 356
FaiI YATR 6 cut(s) 98, 311, 321, 346, 354, 444
FalI AAGNNNNNCTT 4 cut(s) 8, 40, 362, 394
FatI CATG 3 cut(s) 309, 344, 352
FokI GGATG 1 cut(s) 30
FspBI CTAG 2 cut(s) 266, 326
GsaI CCCAGC 2 cut(s) 75, 496
HaeIII GGCC 2 cut(s) 415, 542
HapII CCGG 1 cut(s) 383
HgaI GACGC 1 cut(s) 90
Hin1II CATG 3 cut(s) 313, 348, 356
HinfI GANTC 2 cut(s) 28, 121
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 2 cut(s) 396, 405
Hpy188I TCNGA 2 cut(s) 108, 126
Hpy188III TCNNGA 1 cut(s) 472
Hpy8I GTNNAC 2 cut(s) 396, 405
HpyAV CCTTC 3 cut(s) 135, 253, 367
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 2 cut(s) 202, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 199
HpyF3I CTNAG 2 cut(s) 57, 105
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 3 cut(s) 313, 348, 356
Kzo9I GATC 2 cut(s) 87, 521
MaeI CTAG 2 cut(s) 266, 326
MaeII ACGT 1 cut(s) 407
MalI GATC 2 cut(s) 89, 523
MboI GATC 2 cut(s) 87, 521
MboII GAAGA 4 cut(s) 244, 276, 351, 460
MfeI CAATTG 1 cut(s) 275
MflI RGATCY 1 cut(s) 521
MluCI AATT 7 cut(s) 134, 219, 275, 366, 455, 498, 508
MnlI CCTC 1 cut(s) 328
MseI TTAA 2 cut(s) 137, 369
MslI CAYNNNNRTG 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 383
MunI CAATTG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 68, 199
NcoI CCATGG 1 cut(s) 344
NdeII GATC 2 cut(s) 87, 521
NlaIII CATG 3 cut(s) 313, 348, 356
NspI RCATGY 1 cut(s) 356
PciI ACATGT 1 cut(s) 352
PfeI GAWTC 2 cut(s) 28, 121
PflMI CCANNNNNTGG 1 cut(s) 478
PscI ACATGT 1 cut(s) 352
PspFI CCCAGC 2 cut(s) 71, 492
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 4 cut(s) 23, 264, 395, 447
RsaNI GTAC 4 cut(s) 22, 263, 394, 446
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 2 cut(s) 137, 369
Sau3AI GATC 2 cut(s) 87, 521
Sau96I GGNCC 1 cut(s) 182
ScaI AGTACT 1 cut(s) 23
SetI ASST 6 cut(s) 36, 73, 114, 264, 410, 479
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 441
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 7 cut(s) 134, 219, 275, 366, 455, 498, 508
SspMI CTAG 2 cut(s) 266, 326
StyI CCWWGG 2 cut(s) 290, 344
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 410
TaqI TCGA 1 cut(s) 8
TasI AATT 7 cut(s) 134, 219, 275, 366, 455, 498, 508
TatI WGTACW 2 cut(s) 21, 393
TfiI GAWTC 2 cut(s) 28, 121
Tru1I TTAA 2 cut(s) 137, 369
Tru9I TTAA 2 cut(s) 137, 369
TscAI CASTG 2 cut(s) 97, 393
TspDTI ATGAA 1 cut(s) 298
TspRI CASTG 2 cut(s) 97, 393
Van91I CCANNNNNTGG 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 3 cut(s) 219, 498, 508
XceI RCATGY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XspI CTAG 2 cut(s) 266, 326
ZrmI AGTACT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.