MD10G1323900.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011859
Physical Location & Seq
Forward (+)
40472559 .. 40474911
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1323900.v1.1.491

Sequence Viewer

Length: 558 bp
ATGGGGTCGATTGCAAAGAAGGGGTTGCAGCAGTACTTGCTTCAACTTCAGCATCATCCGCTCAGAACCAAGGCAATTACTGCGGGGGTTTTGTCAGCGATCAGTGACATAGTGTCGCAGAAGCTCACCGGCATTCAGAAACTTCAGATAAGACGGCTCCTTCTCAAAGTGCTTCTAGGAGCTGTTTATCTTGGACCATTTGGGCATTTCCTGCATACCATACTAGATAAGATTTTCAAGGGGAAGAAGGATTCAAAAACAGTAGCAAAGAAGGTGCTGGTGGAACAGCTGACGGCTTCTCCCTGGAATAACTTGGTTTTCATGCTTTACTATGGGTTGGTTGTGGAGGGAAGACCTTGGATGCAAGTGAAAAGTAAAATCAAGACGGACTACCCAAAGGTTCAATACACATCGTGGACGTTCTGGCCTGTTCTGGGGTGGATAAATCACCAGTATGTGCCACTGCACCTCCGTGTCATCTTCCACAGCTTGGTCGCTTTTGGCTGGGGAATTTTCCTAAACTTGCAGGCAAGATCTGTGGCCTTACCAAAAGCCTAG

Protein Analysis

186

Amino Acids

21.06

Weight (kDa)

10.32

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 114 - 174 8.2e-22 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011859)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04470 AT4G04470
fragaria_vesca FvH4_3g01800 FvH4_3g01800
malus_domestica MD05G1349300.v1.1 MD10G1323900.v1.1
prunus_persica Prupe.4G018300_v2.0.a1 Prupe.4G018300_v2.0.a1
pyrus_communis pycom05g31690 pycom10g27430
rosa_chinensis RchiOBHm_Chr5g0002631
rosa_laevigata RLG00000031048
rosa_multiflora Rmu_sc0009084.1_g000010
rosa_roxburghii Rroxscaffold_1G00073230
rosa_rugosa Rorug04G0397900
rosa_samantha Rh5AG021300 Rh5CG023400 Rh5DG022400
rosa_wichuraiana Rw5G001970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 61
AciI CCGC 2 cut(s) 59, 83
AcsI RAATTY 1 cut(s) 510
AcuI CTGAAG 2 cut(s) 32, 128
AdeI CACNNNGTG 1 cut(s) 414
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 434, 490
AgsI TTSAA 4 cut(s) 44, 238, 255, 404
AhdI GACNNNNNGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 302
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 4 cut(s) 124, 182, 289, 489
AluI AGCT 4 cut(s) 124, 182, 289, 489
AoxI GGCC 2 cut(s) 425, 540
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 118, 440
AvaII GGWCC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 40
BceAI ACGGC 2 cut(s) 170, 309
BciT130I CCWGG 1 cut(s) 304
BfaI CTAG 3 cut(s) 176, 224, 556
BglII AGATCT 1 cut(s) 533
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 194
BmeRI GACNNNNNGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 304
BmsI GCATC 2 cut(s) 61, 351
BpiI GAAGAC 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 69, 302, 356
BsaXI ACNNNNNCTCC 4 cut(s) 283, 313, 453, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 490
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 3 cut(s) 69, 302, 356
BseGI GGATG 2 cut(s) 55, 366
BseLI CCNNNNNNNGG 2 cut(s) 434, 490
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 504
BsgI GTGCAG 1 cut(s) 449
BshFI GGCC 2 cut(s) 427, 542
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 434, 490
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 2 cut(s) 427, 542
Bsp143I GATC 2 cut(s) 99, 533
BspACI CCGC 2 cut(s) 59, 83
BspANI GGCC 2 cut(s) 427, 542
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 69, 302, 356
BssMI GATC 2 cut(s) 99, 533
BssT1I CCWWGG 2 cut(s) 69, 356
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 262
BstAPI GCANNNNNTGC 3 cut(s) 37, 80, 211
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 55, 366
BstKTI GATC 2 cut(s) 102, 536
BstMBI GATC 2 cut(s) 99, 533
BstMWI GCNNNNNNNGC 4 cut(s) 37, 58, 80, 211
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BsuRI GGCC 2 cut(s) 427, 542
BtsCI GGATG 2 cut(s) 55, 366
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 2 cut(s) 109, 461
Cac8I GCNNGC 1 cut(s) 528
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 34
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 1 cut(s) 322
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 101, 535
DpnII GATC 2 cut(s) 99, 533
DraIII CACNNNGTG 1 cut(s) 414
DriI GACNNNNNGTC 1 cut(s) 112
Eam1105I GACNNNNNGTC 1 cut(s) 112
Eco130I CCWWGG 2 cut(s) 69, 356
Eco47I GGWCC 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 32, 128
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 69, 356
ErhI CCWWGG 2 cut(s) 69, 356
FaeI CATG 1 cut(s) 325
FaiI YATR 6 cut(s) 110, 216, 221, 323, 333, 456
FatI CATG 1 cut(s) 321
FauI CCCGC 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 42, 373
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 3 cut(s) 176, 224, 556
GluI GCNGC 1 cut(s) 29
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 2 cut(s) 427, 542
HapII CCGG 1 cut(s) 129
Hin1II CATG 1 cut(s) 325
HinfI GANTC 1 cut(s) 251
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 118, 440
Hpy166II GTNNAC 1 cut(s) 417
Hpy188I TCNGA 3 cut(s) 65, 138, 147
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 1 cut(s) 417
HpyAV CCTTC 4 cut(s) 13, 170, 241, 265
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 6 cut(s) 14, 28, 214, 364, 466, 526
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 58, 80, 211
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 2 cut(s) 99, 533
LmnI GCTCC 2 cut(s) 162, 179
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 61, 351
MaeI CTAG 3 cut(s) 176, 224, 556
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 101, 535
MbiI CCGCTC 1 cut(s) 61
MboI GATC 2 cut(s) 99, 533
MboII GAAGA 3 cut(s) 256, 363, 472
MflI RGATCY 1 cut(s) 533
MluCI AATT 2 cut(s) 75, 510
MnlI CCTC 2 cut(s) 340, 479
MslI CAYNNNNRTG 2 cut(s) 453, 471
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 304
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 4 cut(s) 37, 58, 80, 211
NdeII GATC 2 cut(s) 99, 533
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 471
PctI GAATGC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 490
PkrI GCNGC 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 2 cut(s) 453, 471
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 2 cut(s) 99, 533
Sau96I GGNCC 1 cut(s) 194
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 304
SetI ASST 9 cut(s) 126, 184, 276, 291, 358, 402, 422, 471, 491
SfaNI GCATC 2 cut(s) 61, 351
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 453, 471
Sse9I AATT 2 cut(s) 75, 510
SsiI CCGC 2 cut(s) 59, 83
SspMI CTAG 3 cut(s) 176, 224, 556
StyD4I CCNGG 1 cut(s) 302
StyI CCWWGG 2 cut(s) 69, 356
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 1 cut(s) 422
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 75, 510
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 1 cut(s) 251
TscAI CASTG 2 cut(s) 109, 468
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 2 cut(s) 401, 461
TspRI CASTG 2 cut(s) 109, 468
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 510
XspI CTAG 3 cut(s) 176, 224, 556
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.