AT4G04860

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011158
Physical Location & Seq
Forward (+)
2459853 .. 2461739
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04860.1

Sequence Viewer

Length: 735 bp
ATGGCTCAGGCTGTAGAAGAATGGTATAAACAGATGCCGATTATCACTCGCTCTTATCTCACGGCGGCTGTTATCACCACCGTCGGATGTTCCCTCGATATCATATCTCCATATAACCTTTATTTGAATCCGACACTTGTGGTGAAGCAATACCAATATTGGCGTCTCGTTACTAATTTCTTGTATTTCCGGAAGATGGATTTGGACTTCATGTTCCATATGTTCTTTCTCGCACGATACTGCAAACTCCTTGAAGAAAACTCATTCAGGGGAAAGACTGCTGATTTCCTATACATGCTCCTATTTGGAGCATCTGTTTTAACCGGTATTGTACTTATCGGTGGAATGATACCATACTTGTCAGCATCATTTGCTAAAATCATCTTCCTCAGCAACTCATTAACTTTCATGATGGTCTATGTATGGAGCAAACAAAATCCTTATATTCACATGAGTTTCCTTGGTCTGTTCACCTTCACAGCAGCTTACCTACCATGGGTGCTTCTTGGCTTCTCTATCCTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGGGTATGATAGCAGGTCACGCTTACTACTTTCTGGCTGAGGTTTATCCGCGAATGACTAATCGTCGTCCATTAAAGACTCCATCATTCCTCAAAGCGTTATTTGCAGATGAACCAGTTGTGGTTGCACGGCCAGAAGATGTGAGGTTTGCTGCTGCGCCTTTCGATGAAATCCACCAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

244

Amino Acids

28.1

Weight (kDa)

8.42

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 12 - 211 1e-60 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 527
AccB7I CCANNNNNTGG 1 cut(s) 537
AccII CGCG 1 cut(s) 601
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 2 cut(s) 65, 599
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 3 cut(s) 196, 496, 537
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 2 cut(s) 127, 254
AhdI GACNNNNNGTC 1 cut(s) 612
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 1 cut(s) 485
AluI AGCT 1 cut(s) 485
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 552
Aor13HI TCCGGA 1 cut(s) 189
AoxI GGCC 1 cut(s) 680
ApeKI GCWGC 3 cut(s) 482, 701, 704
AsiGI ACCGGT 1 cut(s) 323
AspLEI GCGC 1 cut(s) 709
AsuHPI GGTGA 3 cut(s) 67, 154, 463
BanI GGYRCC 1 cut(s) 527
BbvCI CCTCAGC 2 cut(s) 389, 588
BbvI GCAGC 3 cut(s) 494, 688, 691
BccI CCATC 3 cut(s) 190, 406, 640
BceAI ACGGC 2 cut(s) 78, 695
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 554
BisI GCNGC 4 cut(s) 66, 483, 702, 705
BlsI GCNGC 4 cut(s) 67, 484, 703, 706
BmeRI GACNNNNNGTC 1 cut(s) 612
BmiI GGNNCC 1 cut(s) 529
BmsI GCATC 3 cut(s) 24, 320, 374
Bpu10I CCTNAGC 3 cut(s) 6, 389, 588
BsaHI GRCGYC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 460, 494
BsaWI WCCGGW 2 cut(s) 189, 323
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 496, 537
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 531, 665
BseAI TCCGGA 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 460, 494
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 3 cut(s) 196, 496, 537
BseMII CTCAG 3 cut(s) 20, 403, 579
BseNI ACTGG 2 cut(s) 531, 665
BseXI GCAGC 3 cut(s) 494, 688, 691
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 1 cut(s) 682
BshNI GGYRCC 1 cut(s) 527
BshTI ACCGGT 1 cut(s) 323
BsiSI CCGG 2 cut(s) 190, 324
BslI CCNNNNNNNGG 3 cut(s) 196, 496, 537
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 682
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 1 cut(s) 544
Bsp19I CCATGG 1 cut(s) 494
BspACI CCGC 2 cut(s) 65, 599
BspANI GGCC 1 cut(s) 682
BspCNI CTCAG 3 cut(s) 19, 402, 580
BspEI TCCGGA 1 cut(s) 189
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 554
BspPI GGATC 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 2 cut(s) 531, 665
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 460, 494
BssMI GATC 1 cut(s) 544
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 2 cut(s) 460, 494
Bst4CI ACNGT 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 163
BstAPI GCANNNNNTGC 1 cut(s) 371
BstDEI CTNAG 3 cut(s) 6, 389, 588
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 601
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 3 cut(s) 371, 569, 653
BstNSI RCATGY 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 3 cut(s) 494, 688, 691
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 1 cut(s) 682
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 538
BveI ACCTGC 1 cut(s) 554
CciI TCATGA 1 cut(s) 408
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 323
CseI GACGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 332
CspAI ACCGGT 1 cut(s) 323
CviAII CATG 5 cut(s) 211, 295, 409, 451, 495
CviJI RGCY 7 cut(s) 5, 11, 68, 485, 510, 587, 682
CviKI_1 RGCY 7 cut(s) 5, 11, 68, 485, 510, 587, 682
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 3 cut(s) 6, 389, 588
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
DriI GACNNNNNGTC 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 680
Eam1105I GACNNNNNGTC 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 460, 494
Eco32I GATATC 1 cut(s) 100
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 460, 494
ErhI CCWWGG 2 cut(s) 460, 494
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 5 cut(s) 214, 298, 412, 454, 498
FatI CATG 5 cut(s) 210, 294, 408, 450, 494
FauNDI CATATG 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 66, 483, 702, 705
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 4 cut(s) 66, 483, 702, 705
GlaI GCGC 1 cut(s) 708
GluI GCNGC 4 cut(s) 66, 483, 702, 705
HaeIII GGCC 1 cut(s) 682
HapII CCGG 2 cut(s) 190, 324
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 709
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 5 cut(s) 214, 298, 412, 454, 498
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 2 cut(s) 127, 628
HpaII CCGG 2 cut(s) 190, 324
HphI GGTGA 3 cut(s) 67, 154, 463
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 2 cut(s) 86, 132
Hpy188III TCNNGA 2 cut(s) 190, 409
Hpy8I GTNNAC 1 cut(s) 471
Hpy99I CGWCG 2 cut(s) 86, 618
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 243, 656, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 569, 653
HpyF3I CTNAG 3 cut(s) 6, 389, 588
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 5 cut(s) 214, 298, 412, 454, 498
HspAI GCGC 1 cut(s) 707
Kpn2I TCCGGA 1 cut(s) 189
Kzo9I GATC 1 cut(s) 544
LmnI GCTCC 3 cut(s) 303, 308, 426
LpnPI CCDG 8 cut(s) 203, 253, 337, 544, 549, 569, 678, 696
Lsp1109I GCAGC 3 cut(s) 494, 688, 691
LweI GCATC 3 cut(s) 24, 320, 374
MaeIII GTNAC 2 cut(s) 169, 566
MalI GATC 1 cut(s) 546
MboI GATC 1 cut(s) 544
MboII GAAGA 5 cut(s) 29, 205, 266, 376, 698
MflI RGATCY 1 cut(s) 544
MluCI AATT 1 cut(s) 175
MlyI GAGTC 1 cut(s) 622
MmeI TCCRAC 2 cut(s) 64, 155
MnlI CCTC 5 cut(s) 104, 398, 583, 650, 687
MroI TCCGGA 1 cut(s) 189
MseI TTAA 3 cut(s) 320, 401, 623
MspI CCGG 2 cut(s) 190, 324
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 3 cut(s) 371, 569, 653
NcoI CCATGG 1 cut(s) 494
NdeI CATATG 1 cut(s) 219
NdeII GATC 1 cut(s) 544
NlaIII CATG 5 cut(s) 214, 298, 412, 454, 498
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 566
NspI RCATGY 1 cut(s) 298
PagI TCATGA 1 cut(s) 408
PfeI GAWTC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 537
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 4 cut(s) 67, 484, 703, 706
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
PspN4I GGNNCC 1 cut(s) 529
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SaqAI TTAA 3 cut(s) 320, 401, 623
SatI GCNGC 4 cut(s) 66, 483, 702, 705
Sau3AI GATC 1 cut(s) 544
SchI GAGTC 1 cut(s) 622
SetI ASST 7 cut(s) 120, 476, 487, 492, 568, 594, 698
SfaNI GCATC 3 cut(s) 24, 320, 374
SfcI CTRYAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 175
SsiI CCGC 2 cut(s) 65, 599
SspI AATATT 1 cut(s) 158
StyI CCWWGG 2 cut(s) 460, 494
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 2 cut(s) 96, 714
TasI AATT 1 cut(s) 175
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 3 cut(s) 320, 401, 623
Tru9I TTAA 3 cut(s) 320, 401, 623
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 3 cut(s) 482, 701, 704
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 4 cut(s) 199, 397, 675, 732
TspRI CASTG 1 cut(s) 538
Van91I CCANNNNNTGG 1 cut(s) 537
XceI RCATGY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.