FvH4_3g02350

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011158
Physical Location & Seq
Forward (+)
1192787 .. 1195424
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02350.t1

Sequence Viewer

Length: 735 bp
ATGGCGCAAGCAGTTGAAGAATGGTACAAGCAGATGCCGGTGATCACCAGGTGGTATCTCACCGCCGCTGTCGTCACCAGCATCGGTTGCTCCCTCGATATAATCTCGCCTCATAATCTGTACTTGAACCCTATACTAGTGGTGAAGCAGTATCAGCTATGGCGACTCATCACTAATTTCTTGTACTTTCGGAAGATAGACTTGGATTTTCTGTTCCACATGTTCTTCCTTGCTCGGTACTGCAAGCTTCTGGAAGAGAACTCATTCAGGGGGAGAACAGCTGATTTCTTTTACATGCTCTTGTTCGGTGCATCTGTGTTGACTGGGATAGTTTTGGTTGGAGGAATGATACCTTATTTGTCAGAGTCGTTTGCTAAGATTATATTCCTCAGCAACTCACTGACATTCATGATGGTCTATGTGTGGAGCAAGCAGAACCCTTTCATCCACATGAGTTTCTTGGGACTCTTTAACTTCACAGCAGCCTACCTACCATGGTTTCTTCTAGGCTTCTCTGTCCTTGTCGGGGCCAGCGCTTGGGTGGATCTCCTGGGAATGATTGCTGGTCATGCATATTATTTTCTAGAAGATGTTTACCCCCGAATGACTGGTCGTCGGCCCTTGAGAACTCCTTCATTTATCAAAGCGCTATTTGCAGATGAGGCTGTTGTGGTGGCACGGCCAGCAAACGTGAGATTTGCGCCTCCACCTGTTGAGGAAATTCACCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

245

Amino Acids

28.17

Weight (kDa)

8.48

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 12 - 212 6.2e-62 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 537
AciI CCGC 2 cut(s) 63, 66
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 680
AcsI RAATTY 1 cut(s) 720
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 4 cut(s) 26, 122, 185, 239
AfeI AGCGCT 2 cut(s) 535, 648
AfiI CCNNNNNNNGG 2 cut(s) 526, 537
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 2 cut(s) 17, 127
AhdI GACNNNNNGTC 1 cut(s) 612
AhlI ACTAGT 1 cut(s) 136
AjnI CCWGG 2 cut(s) 47, 549
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 3 cut(s) 157, 247, 281
AluI AGCT 3 cut(s) 157, 247, 281
AlwI GGATC 1 cut(s) 552
Aor51HI AGCGCT 2 cut(s) 535, 648
AoxI GGCC 3 cut(s) 528, 617, 680
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 720
ArsI GACNNNNNNTTYG 2 cut(s) 595, 627
Asp700I GAANNNNTTC 3 cut(s) 263, 440, 631
AspLEI GCGC 4 cut(s) 7, 536, 649, 703
AspS9I GGNCC 2 cut(s) 528, 618
AsuHPI GGTGA 6 cut(s) 37, 52, 52, 67, 154, 716
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 494
BccI CCATC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 695
BciT130I CCWGG 2 cut(s) 49, 551
BclI TGATCA 1 cut(s) 42
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 3 cut(s) 137, 506, 584
BfoI RGCGCY 2 cut(s) 537, 650
BisI GCNGC 2 cut(s) 66, 483
BlsI GCNGC 2 cut(s) 67, 484
Bme1390I CCNGG 2 cut(s) 49, 551
BmeRI GACNNNNNGTC 1 cut(s) 612
BmgT120I GGNCC 2 cut(s) 528, 618
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 2 cut(s) 49, 551
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 3 cut(s) 24, 90, 320
BmuI ACTGGG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 643
BsaJI CCNNGG 2 cut(s) 494, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 537
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 328, 613
BseBI CCWGG 2 cut(s) 49, 551
BseDI CCNNGG 2 cut(s) 494, 550
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 526, 537
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 2 cut(s) 328, 613
BseXI GCAGC 1 cut(s) 494
BshFI GGCC 3 cut(s) 530, 619, 682
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 2 cut(s) 526, 537
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 3 cut(s) 530, 619, 682
Bsp143I GATC 2 cut(s) 42, 544
Bsp19I CCATGG 1 cut(s) 494
BspACI CCGC 2 cut(s) 63, 66
BspANI GGCC 3 cut(s) 530, 619, 682
BspCNI CTCAG 1 cut(s) 402
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 2 cut(s) 328, 613
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 494, 550
BssMI GATC 2 cut(s) 42, 544
BssT1I CCWWGG 1 cut(s) 494
Bst2UI CCWGG 2 cut(s) 49, 551
Bst6I CTCTTC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 5 cut(s) 9, 245, 431, 532, 684
BstDEI CTNAG 2 cut(s) 375, 389
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 444
BstH2I RGCGCY 2 cut(s) 537, 650
BstHHI GCGC 4 cut(s) 7, 536, 649, 703
BstKTI GATC 2 cut(s) 45, 547
BstMBI GATC 2 cut(s) 42, 544
BstMWI GCNNNNNNNGC 6 cut(s) 87, 154, 569, 653, 662, 683
BstNI CCWGG 2 cut(s) 49, 551
BstNSI RCATGY 2 cut(s) 223, 298
BstSCI CCNGG 2 cut(s) 47, 549
BstV1I GCAGC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuRI GGCC 3 cut(s) 530, 619, 682
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 5 cut(s) 9, 245, 431, 532, 684
CciI TCATGA 1 cut(s) 408
CfoI GCGC 4 cut(s) 7, 536, 649, 703
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 528, 618
CsiI ACCWGGT 1 cut(s) 47
Csp6I GTAC 4 cut(s) 25, 121, 184, 238
CviAII CATG 6 cut(s) 220, 295, 409, 451, 495, 569
CviJI RGCY 9 cut(s) 157, 247, 281, 485, 510, 530, 619, 665, 682
CviKI_1 RGCY 9 cut(s) 157, 247, 281, 485, 510, 530, 619, 665, 682
CviQI GTAC 4 cut(s) 25, 121, 184, 238
DdeI CTNAG 2 cut(s) 375, 389
DpnI GATC 2 cut(s) 44, 546
DpnII GATC 2 cut(s) 42, 544
DraIII CACNNNGTG 1 cut(s) 51
DriI GACNNNNNGTC 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 680
Eam1104I CTCTTC 1 cut(s) 249
Eam1105I GACNNNNNGTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 494
Eco47III AGCGCT 2 cut(s) 535, 648
EcoRII CCWGG 2 cut(s) 47, 549
EcoT14I CCWWGG 1 cut(s) 494
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 6 cut(s) 223, 298, 412, 454, 498, 572
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 1 cut(s) 477
FatI CATG 6 cut(s) 219, 294, 408, 450, 494, 568
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 66, 483
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 66, 483
FspBI CTAG 3 cut(s) 137, 506, 584
GlaI GCGC 4 cut(s) 6, 535, 648, 702
GluI GCNGC 2 cut(s) 66, 483
HaeII RGCGCY 2 cut(s) 537, 650
HaeIII GGCC 3 cut(s) 530, 619, 682
HapII CCGG 1 cut(s) 38
HhaI GCGC 4 cut(s) 7, 536, 649, 703
Hin1II CATG 6 cut(s) 223, 298, 412, 454, 498, 572
Hin6I GCGC 4 cut(s) 5, 534, 647, 701
HinP1I GCGC 4 cut(s) 5, 534, 647, 701
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 165, 365, 465
HpaII CCGG 1 cut(s) 38
HphI GGTGA 6 cut(s) 37, 52, 52, 67, 154, 716
Hpy166II GTNNAC 2 cut(s) 321, 595
Hpy188I TCNGA 2 cut(s) 192, 364
Hpy188III TCNNGA 3 cut(s) 251, 409, 584
Hpy8I GTNNAC 2 cut(s) 321, 595
Hpy99I CGWCG 1 cut(s) 618
HpyAV CCTTC 1 cut(s) 642
HpyCH4IV ACGT 1 cut(s) 690
HpyCH4V TGCA 4 cut(s) 243, 311, 572, 656
HpyF10VI GCNNNNNNNGC 6 cut(s) 87, 154, 569, 653, 662, 683
HpyF3I CTNAG 2 cut(s) 375, 389
HpySE526I ACGT 1 cut(s) 690
Hsp92II CATG 6 cut(s) 223, 298, 412, 454, 498, 572
HspAI GCGC 4 cut(s) 5, 534, 647, 701
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 2 cut(s) 42, 544
LmnI GCTCC 2 cut(s) 95, 426
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 3 cut(s) 24, 90, 320
MabI ACCWGGT 1 cut(s) 47
MaeI CTAG 3 cut(s) 137, 506, 584
MaeII ACGT 1 cut(s) 690
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 44, 546
MboI GATC 2 cut(s) 42, 544
MboII GAAGA 6 cut(s) 29, 205, 217, 266, 494, 599
MflI RGATCY 1 cut(s) 544
MluCI AATT 2 cut(s) 175, 720
MlyI GAGTC 3 cut(s) 159, 374, 459
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 7 cut(s) 104, 120, 335, 398, 655, 709, 714
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 3 cut(s) 263, 440, 631
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 2 cut(s) 68, 281
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 49, 551
MvaI CCWGG 2 cut(s) 49, 551
MwoI GCNNNNNNNGC 6 cut(s) 87, 154, 569, 653, 662, 683
NcoI CCATGG 1 cut(s) 494
NdeII GATC 2 cut(s) 42, 544
NlaIII CATG 6 cut(s) 223, 298, 412, 454, 498, 572
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 2 cut(s) 223, 298
PagI TCATGA 1 cut(s) 408
PciI ACATGT 1 cut(s) 219
PdmI GAANNNNTTC 3 cut(s) 263, 440, 631
PflMI CCANNNNNTGG 1 cut(s) 537
PkrI GCNGC 2 cut(s) 67, 484
PleI GAGTC 3 cut(s) 159, 373, 459
PpsI GAGTC 3 cut(s) 159, 373, 459
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 47, 549
PspGI CCWGG 2 cut(s) 47, 549
PspN4I GGNNCC 1 cut(s) 529
PspPI GGNCC 2 cut(s) 528, 618
PsuI RGATCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 4 cut(s) 26, 122, 185, 239
RsaNI GTAC 4 cut(s) 25, 121, 184, 238
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 2 cut(s) 66, 483
Sau3AI GATC 2 cut(s) 42, 544
Sau96I GGNCC 2 cut(s) 528, 618
SchI GAGTC 3 cut(s) 159, 374, 459
ScrFI CCNGG 2 cut(s) 49, 551
SetI ASST 8 cut(s) 53, 159, 249, 283, 355, 492, 693, 712
SexAI ACCWGGT 1 cut(s) 47
SfaNI GCATC 3 cut(s) 24, 90, 320
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
SpeI ACTAGT 1 cut(s) 136
Sse9I AATT 2 cut(s) 175, 720
SsiI CCGC 2 cut(s) 63, 66
SspMI CTAG 3 cut(s) 137, 506, 584
StyD4I CCNGG 2 cut(s) 47, 549
StyI CCWWGG 1 cut(s) 494
TaiI ACGT 1 cut(s) 693
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 175, 720
TatI WGTACW 2 cut(s) 120, 183
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 397, 433, 624
TspRI CASTG 1 cut(s) 405
Van91I CCANNNNNTGG 1 cut(s) 537
XapI RAATTY 1 cut(s) 720
XbaI TCTAGA 1 cut(s) 583
XceI RCATGY 2 cut(s) 223, 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmnI GAANNNNTTC 3 cut(s) 263, 440, 631
XspI CTAG 3 cut(s) 137, 506, 584
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.