AT4G21810

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011158
Physical Location & Seq
Reverse (-)
11575096 .. 11577254
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21810.1

Sequence Viewer

Length: 735 bp
ATGGCTCAAGCCGTAGAAGAGTGGTACAAGCAGATGCCGATTATAACCCGGTCGTATCTCACGGCGGCTGTAGTCACCACCGTCGGGTGTTCGCTCGAGATTATATCTCCTTATAATCTCTACCTAAATCCTACCCTTGTGGTGAAGCAATACCAGTTCTGGCGTCTTGTCACAAATTTCCTTTATTTCCGAAAGATGGATTTGGACTTTTTGTTCCATATGTTTTTTCTAGCTCGATACTGCAAACTGCTCGAAGAAAACTCCTTCAGGGGAAAGACCGCGGATTTCCTTTACATGCTCTTATTCGGGGCAACTGTTCTAACTGGTATTGTTCTCATTGGCGGAATGATACCTTATTTGTCTGTTTCATTCTCCAAAATCATCTTCCTCAGCAATTCATTGACTTTCATGATGGTCTATGTATGGAGTAAACAAAATCCTTACATCCACATGAGTTTCCTTGGCCTCTTCACTTTCACAGCAGCTTATTTACCATGGGTACTTCTTGGATTCTCTATCCTTGTTGGTGCAAGTGCATGGGGGGATTTTCTGGGAATGATAGCGGGCCACGCATACTACTTCTTGGCATTTGTGTATCCCCGAATGACGGATCGACGTCCCTTGAAAACTCCATCTTTCCTCAAGGCCCTATTTGCTGATGAGCCAGTCGTGATTGCAAGGCCAGAAGATGTGAGATTTGCTCATGCGCCTTTTGATGAAATCCACCAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

244

Amino Acids

28.21

Weight (kDa)

8.43

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 12 - 211 2.7e-60 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 44, 114
AatII GACGTC 1 cut(s) 619
AccII CGCG 1 cut(s) 281
AciI CCGC 5 cut(s) 65, 279, 281, 342, 563
AclWI GGATC 1 cut(s) 618
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 250
AcyI GRCGYC 2 cut(s) 163, 616
AfaI GTAC 2 cut(s) 26, 501
AfiI CCNNNNNNNGG 3 cut(s) 84, 196, 607
AgsI TTSAA 1 cut(s) 625
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 233, 485
AluI AGCT 2 cut(s) 233, 485
AlwI GGATC 1 cut(s) 618
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 4 cut(s) 463, 565, 645, 680
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 2 cut(s) 565, 646
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 67, 154
AvaI CYCGRG 1 cut(s) 95
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 494
BccI CCATC 3 cut(s) 190, 406, 640
BceAI ACGGC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciVI GTATCC 1 cut(s) 606
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 606
BisI GCNGC 2 cut(s) 66, 483
BlsI GCNGC 2 cut(s) 67, 484
Bme1390I CCNGG 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 565, 646
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 685, 717
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 49
BsaHI GRCGYC 2 cut(s) 163, 616
BsaJI CCNNGG 3 cut(s) 279, 460, 494
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 196, 607
Bse1I ACTGG 3 cut(s) 154, 328, 665
BseDI CCNNGG 3 cut(s) 279, 460, 494
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 3 cut(s) 84, 196, 607
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 3 cut(s) 154, 328, 665
BseXI GCAGC 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 4 cut(s) 465, 567, 647, 682
BsiEI CGRYCG 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 3 cut(s) 84, 196, 607
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 4 cut(s) 465, 567, 647, 682
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 1 cut(s) 610
Bsp19I CCATGG 1 cut(s) 494
BspACI CCGC 5 cut(s) 65, 279, 281, 342, 563
BspANI GGCC 4 cut(s) 465, 567, 647, 682
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 1 cut(s) 281
BspHI TCATGA 1 cut(s) 408
BspPI GGATC 1 cut(s) 618
BsrI ACTGG 3 cut(s) 154, 328, 665
BssECI CCNNGG 3 cut(s) 279, 460, 494
BssMI GATC 1 cut(s) 610
BssNI GRCGYC 2 cut(s) 163, 616
BssT1I CCWWGG 2 cut(s) 460, 494
Bst4CI ACNGT 2 cut(s) 82, 316
Bst6I CTCTTC 2 cut(s) 12, 473
BstACI GRCGYC 2 cut(s) 163, 616
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 1 cut(s) 389
BstDSI CCRYGG 2 cut(s) 279, 494
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 1 cut(s) 613
BstMBI GATC 1 cut(s) 610
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 569, 653
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 494
BsuI GTATCC 1 cut(s) 606
BsuRI GGCC 4 cut(s) 465, 567, 647, 682
BtgI CCRYGG 2 cut(s) 279, 494
BtsCI GGATG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 565
CciI TCATGA 1 cut(s) 408
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 2 cut(s) 565, 646
Cfr42I CCGCGG 1 cut(s) 282
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 25, 500
CviAII CATG 6 cut(s) 295, 409, 451, 495, 537, 704
CviQI GTAC 2 cut(s) 25, 500
DdeI CTNAG 1 cut(s) 389
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 12, 473
EarI CTCTTC 2 cut(s) 12, 473
EciI GGCGGA 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 460, 494
Eco57I CTGAAG 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 646
EcoT14I CCWWGG 2 cut(s) 460, 494
ErhI CCWWGG 2 cut(s) 460, 494
FaeI CATG 6 cut(s) 298, 412, 454, 498, 540, 707
FaqI GGGAC 1 cut(s) 603
FatI CATG 6 cut(s) 294, 408, 450, 494, 536, 703
FauI CCCGC 1 cut(s) 556
FauNDI CATATG 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 66, 483
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 66, 483
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 708
GluI GCNGC 2 cut(s) 66, 483
HaeIII GGCC 4 cut(s) 465, 567, 647, 682
HapII CCGG 1 cut(s) 49
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 709
Hin1I GRCGYC 2 cut(s) 163, 616
Hin1II CATG 6 cut(s) 298, 412, 454, 498, 540, 707
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 1 cut(s) 510
HpaII CCGG 1 cut(s) 49
HphI GGTGA 2 cut(s) 67, 154
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 3 cut(s) 97, 409, 670
Hpy8I GTNNAC 1 cut(s) 431
Hpy99I CGWCG 2 cut(s) 86, 618
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 82, 316
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 4 cut(s) 243, 530, 536, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 653
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 616
Hsp92I GRCGYC 2 cut(s) 163, 616
Hsp92II CATG 6 cut(s) 298, 412, 454, 498, 540, 707
HspAI GCGC 1 cut(s) 707
KspI CCGCGG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 610
LpnPI CCDG 8 cut(s) 62, 145, 167, 253, 309, 536, 678, 696
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 1 cut(s) 24
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 2 cut(s) 73, 169
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 5 cut(s) 29, 266, 376, 460, 698
MluCI AATT 2 cut(s) 175, 394
MnlI CCTC 3 cut(s) 398, 476, 650
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 49
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 569, 653
NciI CCSGG 1 cut(s) 49
NcoI CCATGG 1 cut(s) 494
NdeI CATATG 1 cut(s) 219
NdeII GATC 1 cut(s) 610
NlaIII CATG 6 cut(s) 298, 412, 454, 498, 540, 707
NmuCI GTSAC 2 cut(s) 73, 169
NspI RCATGY 1 cut(s) 298
PaeR7I CTCGAG 1 cut(s) 95
PagI TCATGA 1 cut(s) 408
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 2 cut(s) 67, 484
PsiI TTATAA 2 cut(s) 44, 114
PspPI GGNCC 2 cut(s) 565, 646
RsaI GTAC 2 cut(s) 26, 501
RsaNI GTAC 2 cut(s) 25, 500
RseI CAYNNNNRTG 1 cut(s) 449
SacII CCGCGG 1 cut(s) 282
SatI GCNGC 2 cut(s) 66, 483
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 2 cut(s) 565, 646
ScrFI CCNGG 1 cut(s) 49
SetI ASST 5 cut(s) 126, 235, 355, 487, 619
SfaNI GCATC 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 69
Sfr274I CTCGAG 1 cut(s) 95
Sfr303I CCGCGG 1 cut(s) 282
SgrBI CCGCGG 1 cut(s) 282
SlaI CTCGAG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 3 cut(s) 6, 95, 641
SmoI CTYRAG 3 cut(s) 6, 95, 641
Sse9I AATT 2 cut(s) 175, 394
SsiI CCGC 5 cut(s) 65, 279, 281, 342, 563
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 2 cut(s) 460, 494
TaaI ACNGT 2 cut(s) 82, 316
TaiI ACGT 1 cut(s) 619
TaqI TCGA 4 cut(s) 96, 235, 252, 613
TasI AATT 2 cut(s) 175, 394
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 510
TseFI GTSAC 2 cut(s) 73, 169
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 2 cut(s) 73, 169
TspDTI ATGAA 4 cut(s) 357, 387, 397, 732
TspGWI ACGGA 1 cut(s) 623
XapI RAATTY 1 cut(s) 175
XceI RCATGY 1 cut(s) 298
XhoI CTCGAG 1 cut(s) 95
XspI CTAG 1 cut(s) 230
ZraI GACGTC 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.