Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004279.1

Orthogroup ID

OG0011158

Physical Location & Seq

Genomic Coordinates Reverse (-)

15762 .. 17541

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004279.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggctcaagcagttgaagaatggtacaagcagatgccggtgatcaccagatggtatctcaccgccgctgtcgtcaccagcatcggttgctccctcgatataatctcgcctcacaatctgtacttgaaccctatactagtggttaagcagtatcaactatggcgcctcatcactaatttcctgtactttcgaaagatagacttggattttctgttccacatgttcttccttgctcggtactgcaagcttcttgaagagaactcattcaggggaaggacggctgatttcttttacatgctcttattcggtgcgtctgtgttgactgggatagttcttgttggaggaatgataccttatttgtcagagtcgtttgcaaagattatattcctaagcaactcgctaacattcatgatggtctatgtgtggagcaagcaaaaccctttcatccatatgagtttcttgggactctttaatttcaccgcagcctacctaccatggtttcttctaggcttctctgtccttgtcggggcaagcgcttgggtggatctcctgggaatgattgctggtcatgcgtattattttctggaagatgtttaccctcgaatgacaggtcgtcggccattgagaaccccttcatttatcaaagcactatttgcagatgatgctgttgtggtggcacggccagcaaatgtgagatttgcgcctccacctgttgaggaacttcaccaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DER1

Protein Analysis

244

Amino Acids

28.15

Weight (kDa)

8.48

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04860 AT4G21810
fragaria_vesca	FvH4_3g02350
malus_domestica	MD05G1343600.v1.1 MD10G1318700.v1.1
prunus_persica	Prupe.4G023300_v2.0.a1 Prupe.4G023300_v2.0.a1
pyrus_communis	pycom05g31300 pycom10g26990
rosa_chinensis	RchiOBHm_Chr5g0003571
rosa_laevigata	RLG00000031153
rosa_multiflora	Rmu_sc0004279.1_g000005 Rmu_sc0015897.1_g000001 Rmu_sc0022447.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072390
rosa_rugosa	Rorug04G0404500 Rorug04G0404600
rosa_samantha	Rh5AG031500 Rh5BG030400
rosa_wichuraiana	Rw5G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AciI	CCGC	3 cut(s)	63, 66, 480
AclWI	GGATC	1 cut(s)	552
AcoI	YGGCCR	2 cut(s)	617, 680
AcyI	GRCGYC	1 cut(s)	163
AfaI	GTAC	4 cut(s)	26, 122, 185, 239
AfeI	AGCGCT	1 cut(s)	535
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	17, 127, 254
AhdI	GACNNNNNGTC	1 cut(s)	612
AhlI	ACTAGT	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	549
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
AlwI	GGATC	1 cut(s)	552
Aor51HI	AGCGCT	1 cut(s)	535
AoxI	GGCC	2 cut(s)	617, 680
ApeKI	GCWGC	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	2 cut(s)	263, 631
AspLEI	GCGC	3 cut(s)	165, 536, 703
AsuHPI	GGTGA	6 cut(s)	37, 52, 52, 67, 469, 716
AsuII	TTCGAA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	2 cut(s)	45, 406
BceAI	ACGGC	2 cut(s)	294, 695
BciT130I	CCWGG	1 cut(s)	551
BclI	TGATCA	1 cut(s)	42
BcuI	ACTAGT	1 cut(s)	136
BfaI	CTAG	2 cut(s)	137, 506
BfoI	RGCGCY	2 cut(s)	166, 537
BisI	GCNGC	2 cut(s)	66, 483
BlsI	GCNGC	2 cut(s)	67, 484
Bme1390I	CCNGG	1 cut(s)	551
BmeRI	GACNNNNNGTC	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	551
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	3 cut(s)	24, 90, 652
BmuI	ACTGGG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	494, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	494, 550
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	494
BshFI	GGCC	2 cut(s)	619, 682
BshNI	GGYRCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	619, 682
Bsp119I	TTCGAA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	42, 544
Bsp19I	CCATGG	1 cut(s)	494
BspACI	CCGC	3 cut(s)	63, 66, 480
BspANI	GGCC	2 cut(s)	619, 682
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	552
BspT104I	TTCGAA	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	494, 550
BssMI	GATC	2 cut(s)	42, 544
BssNI	GRCGYC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	551
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	163
BstAPI	GCANNNNNTGC	3 cut(s)	87, 653, 662
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	4 cut(s)	245, 431, 532, 684
BstDEI	CTNAG	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	444
BstH2I	RGCGCY	2 cut(s)	166, 537
BstHHI	GCGC	3 cut(s)	165, 536, 703
BstKTI	GATC	2 cut(s)	45, 547
BstMBI	GATC	2 cut(s)	42, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 569, 653, 662, 683
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	2 cut(s)	223, 298
BstSCI	CCNGG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	619, 682
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	245, 431, 532, 684
CciI	TCATGA	1 cut(s)	408
CfoI	GCGC	3 cut(s)	165, 536, 703
Cfr10I	RCCGGY	1 cut(s)	37
CseI	GACGC	1 cut(s)	300
Csp6I	GTAC	4 cut(s)	25, 121, 184, 238
CviAII	CATG	5 cut(s)	220, 295, 409, 495, 569
CviJI	RGCY	7 cut(s)	5, 247, 281, 485, 510, 619, 682
CviKI_1	RGCY	7 cut(s)	5, 247, 281, 485, 510, 619, 682
CviQI	GTAC	4 cut(s)	25, 121, 184, 238
DdeI	CTNAG	1 cut(s)	389
DinI	GGCGCC	1 cut(s)	164
DpnI	GATC	2 cut(s)	44, 546
DpnII	GATC	2 cut(s)	42, 544
DriI	GACNNNNNGTC	1 cut(s)	612
EaeI	YGGCCR	2 cut(s)	617, 680
Eam1104I	CTCTTC	1 cut(s)	249
Eam1105I	GACNNNNNGTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	494
Eco47III	AGCGCT	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	494
EgeI	GGCGCC	1 cut(s)	164
EheI	GGCGCC	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	5 cut(s)	223, 298, 412, 498, 572
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	5 cut(s)	219, 294, 408, 494, 568
FauNDI	CATATG	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	66, 483
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	66, 483
FspBI	CTAG	2 cut(s)	137, 506
GlaI	GCGC	3 cut(s)	164, 535, 702
GluI	GCNGC	2 cut(s)	66, 483
HaeII	RGCGCY	2 cut(s)	166, 537
HaeIII	GGCC	2 cut(s)	619, 682
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	3 cut(s)	165, 536, 703
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	5 cut(s)	223, 298, 412, 498, 572
Hin6I	GCGC	3 cut(s)	163, 534, 701
HinP1I	GCGC	3 cut(s)	163, 534, 701
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	365, 465
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	6 cut(s)	37, 52, 52, 67, 469, 716
Hpy166II	GTNNAC	2 cut(s)	321, 595
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	3 cut(s)	251, 409, 584
Hpy8I	GTNNAC	2 cut(s)	321, 595
Hpy99I	CGWCG	1 cut(s)	618
HpyAV	CCTTC	2 cut(s)	267, 642
HpyCH4V	TGCA	3 cut(s)	243, 374, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 569, 653, 662, 683
HpyF3I	CTNAG	1 cut(s)	389
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	5 cut(s)	223, 298, 412, 498, 572
HspAI	GCGC	3 cut(s)	163, 534, 701
KasI	GGCGCC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 544
LmnI	GCTCC	2 cut(s)	95, 426
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	3 cut(s)	24, 90, 652
MaeI	CTAG	2 cut(s)	137, 506
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	44, 546
MboI	GATC	2 cut(s)	42, 544
MboII	GAAGA	5 cut(s)	29, 217, 266, 494, 599
MflI	RGATCY	1 cut(s)	544
MluCI	AATT	2 cut(s)	175, 472
Mly113I	GGCGCC	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	374, 459
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	7 cut(s)	104, 120, 176, 335, 609, 709, 714
MroXI	GAANNNNTTC	2 cut(s)	263, 631
MseI	TTAA	2 cut(s)	144, 471
MslI	CAYNNNNRTG	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	5 cut(s)	87, 569, 653, 662, 683
NarI	GGCGCC	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	494
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	2 cut(s)	42, 544
NlaIII	CATG	5 cut(s)	223, 298, 412, 498, 572
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	2 cut(s)	223, 298
NspV	TTCGAA	1 cut(s)	190
PagI	TCATGA	1 cut(s)	408
PciI	ACATGT	1 cut(s)	219
PdmI	GAANNNNTTC	2 cut(s)	263, 631
PkrI	GCNGC	2 cut(s)	67, 484
PleI	GAGTC	2 cut(s)	373, 459
PluTI	GGCGCC	1 cut(s)	166
PpsI	GAGTC	2 cut(s)	373, 459
PscI	ACATGT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	4 cut(s)	26, 122, 185, 239
RsaNI	GTAC	4 cut(s)	25, 121, 184, 238
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	144, 471
SatI	GCNGC	2 cut(s)	66, 483
Sau3AI	GATC	2 cut(s)	42, 544
SchI	GAGTC	2 cut(s)	374, 459
ScrFI	CCNGG	1 cut(s)	551
SetI	ASST	5 cut(s)	249, 355, 492, 613, 712
SfaNI	GCATC	3 cut(s)	24, 90, 652
SfoI	GGCGCC	1 cut(s)	164
SfuI	TTCGAA	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
SpeI	ACTAGT	1 cut(s)	136
Sse9I	AATT	2 cut(s)	175, 472
SsiI	CCGC	3 cut(s)	63, 66, 480
SspDI	GGCGCC	1 cut(s)	162
SspMI	CTAG	2 cut(s)	137, 506
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	494
TaqI	TCGA	3 cut(s)	96, 190, 601
TasI	AATT	2 cut(s)	175, 472
TatI	WGTACW	2 cut(s)	120, 183
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	144, 471
Tru9I	TTAA	2 cut(s)	144, 471
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	397, 433, 624
XceI	RCATGY	2 cut(s)	223, 298
XmnI	GAANNNNTTC	2 cut(s)	263, 631
XspI	CTAG	2 cut(s)	137, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.