Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011158

Physical Location & Seq

Genomic Coordinates Reverse (-)

56885484 .. 56886128

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0404500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGGTATTTTACTATCATCACAGAGCGGTGCAAAAAAGGGTAACCCAGCTCATAGGCTCATGCGAGGAGGACAAGCTGTTCATCAGATTGAAGTTCTACAAGTGCAGCTCATGGCACCGTGTGGAAAGCGATCCACTTGTTTATGATTACAATACTAAAATAGCCCAAAGAGAATTTTGGGTAAAGTTTTCTCATTTCAAGCACCAATTATCCGACAACTACGATAGTAACAGGGAGTACGAAACGCTCATCTGCGAGTATCTGAGGAGTATGGGTGTGCCGGAAGATGAACATCCTGCTGTTGTTGACAAGCTATTCTGGGTGGTTGAGGCTGCCGTCTCCCCTGTGGACGCTGTTGTAGTGTTTGTGTGGGACGCCACTTACCGCGTCGGAGATGGACATGAACCATATAGGCCCAATGGGATTCCTGCGAGCAGATCATCAATTCAGGGTTTGGAGCAAGTGACACTCGATACTGATGCCTCGCCCTCCTGTGCGATTTGTTTGGAGGATTTTGAGCAAGAACCCATTACCCGGTTGCCCTGCAGACACCATTTTCATGTCCATTGCATTGTTCAGTGCCTGGAGATCAACCACACCTGTCCCCTCTGCCGATACCCAATGCCAACAGAAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DER1

Protein Analysis

214

Amino Acids

25.06

Weight (kDa)

5.41

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	165 - 206	3.9e-12	Ring finger domain
zf-RING_11	PF17123	166 - 192	5.9e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	166 - 205	4.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04860 AT4G21810
fragaria_vesca	FvH4_3g02350
malus_domestica	MD05G1343600.v1.1 MD10G1318700.v1.1
prunus_persica	Prupe.4G023300_v2.0.a1 Prupe.4G023300_v2.0.a1
pyrus_communis	pycom05g31300 pycom10g26990
rosa_chinensis	RchiOBHm_Chr5g0003571
rosa_laevigata	RLG00000031153
rosa_multiflora	Rmu_sc0004279.1_g000005 Rmu_sc0015897.1_g000001 Rmu_sc0022447.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072390
rosa_rugosa	Rorug04G0404500 Rorug04G0404600
rosa_samantha	Rh5AG031500 Rh5BG030400
rosa_wichuraiana	Rw5G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	390
AciI	CCGC	2 cut(s)	29, 388
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	378
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	537
AgsI	TTSAA	2 cut(s)	94, 202
AjnI	CCWGG	1 cut(s)	585
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	4 cut(s)	52, 79, 111, 316
AluI	AGCT	4 cut(s)	52, 79, 111, 316
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	586
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	108, 335
ApoI	RAATTY	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	120, 322
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	587
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	346
BfmI	CTRYAG	1 cut(s)	547
BisI	GCNGC	2 cut(s)	109, 336
BlsI	GCNGC	2 cut(s)	110, 337
Bme1390I	CCNGG	2 cut(s)	538, 587
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	538, 587
BmsI	GCATC	1 cut(s)	472
BpmI	CTGGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	568
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	587
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	83, 283
BseXI	GCAGC	2 cut(s)	120, 322
BseYI	CCCAGC	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	284, 538
BslFI	GGGAC	2 cut(s)	389, 591
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmAI	GTCTC	1 cut(s)	346
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	2 cut(s)	389, 591
BsnI	GGCC	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	133, 440, 591
BspACI	CCGC	2 cut(s)	29, 388
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	551
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	568
BssMI	GATC	3 cut(s)	133, 440, 591
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	1 cut(s)	266
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	3 cut(s)	136, 443, 594
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	3 cut(s)	133, 440, 591
BstNI	CCWGG	1 cut(s)	587
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	536, 585
BstSFI	CTRYAG	1 cut(s)	547
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	120, 322
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	587
Cac8I	GCNNGC	1 cut(s)	436
CaiI	CAGNNNCTG	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	3 cut(s)	362, 379, 386
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	4 cut(s)	63, 114, 404, 563
CviJI	RGCY	8 cut(s)	52, 60, 79, 111, 167, 316, 335, 418
CviKI_1	RGCY	8 cut(s)	52, 60, 79, 111, 167, 316, 335, 418
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	3 cut(s)	135, 442, 593
DpnII	GATC	3 cut(s)	133, 440, 591
DraIII	CACNNNGTG	1 cut(s)	124
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	4 cut(s)	66, 117, 407, 566
FaiI	YATR	9 cut(s)	56, 64, 115, 147, 275, 405, 412, 414, 564
FaqI	GGGAC	2 cut(s)	389, 591
FatI	CATG	4 cut(s)	62, 113, 403, 562
Fnu4HI	GCNGC	2 cut(s)	109, 336
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	109, 336
GluI	GCNGC	2 cut(s)	109, 336
GsaI	CCCAGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	2 cut(s)	284, 538
HgaI	GACGC	3 cut(s)	362, 379, 386
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	66, 117, 407, 566
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	2 cut(s)	284, 538
Hpy166II	GTNNAC	2 cut(s)	310, 352
Hpy188I	TCNGA	4 cut(s)	89, 217, 267, 395
Hpy8I	GTNNAC	2 cut(s)	310, 352
Hpy99I	CGWCG	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	34, 108, 549, 573
HpyF3I	CTNAG	1 cut(s)	266
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	66, 117, 407, 566
Kzo9I	GATC	3 cut(s)	133, 440, 591
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	2 cut(s)	120, 322
LweI	GCATC	1 cut(s)	472
MaeIII	GTNAC	3 cut(s)	43, 230, 466
MalI	GATC	3 cut(s)	135, 442, 593
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	3 cut(s)	133, 440, 591
MboII	GAAGA	1 cut(s)	299
MluCI	AATT	3 cut(s)	176, 209, 447
MmeI	TCCRAC	2 cut(s)	240, 373
MnlI	CCTC	8 cut(s)	61, 64, 261, 325, 496, 502, 505, 620
MseI	TTAA	1 cut(s)	643
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	2 cut(s)	284, 538
MspR9I	CCNGG	2 cut(s)	538, 587
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	390
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	3 cut(s)	133, 440, 591
NlaIII	CATG	4 cut(s)	66, 117, 407, 566
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	427
PkrI	GCNGC	2 cut(s)	110, 337
Psp6I	CCWGG	1 cut(s)	585
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	551
PstNI	CAGNNNCTG	1 cut(s)	586
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	643
SatI	GCNGC	2 cut(s)	109, 336
Sau3AI	GATC	3 cut(s)	133, 440, 591
Sau96I	GGNCC	1 cut(s)	417
ScrFI	CCNGG	2 cut(s)	538, 587
SetI	ASST	6 cut(s)	9, 54, 81, 113, 318, 605
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	561
Sse9I	AATT	3 cut(s)	176, 209, 447
SsiI	CCGC	2 cut(s)	29, 388
StyD4I	CCNGG	2 cut(s)	536, 585
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	474
TasI	AATT	3 cut(s)	176, 209, 447
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TscAI	CASTG	1 cut(s)	587
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	108, 335
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	73, 306, 420, 551
TspRI	CASTG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.