Prupe.4G023300_v2.0.a1

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011158
Physical Location & Seq
Forward (+)
1097619 .. 1099887
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G023300.2

Sequence Viewer

Length: 735 bp
ATGGCTCAAGCAGTGGAGGAATGGTACAAGCAGATGCCTATCATCACCCGCTCCTATCTCACGGCCGCTGTTGTCACCAATATCGGTTGCTCCCTCGATATAATCTCTCCTCATAATCTATACTTGAACCCTATACTAGTTGTCAAGCAGTATCAATTCTGGCGCCTCGTCACCAATTTCCTGTACTTCCGGAAAATGGACTTGGACTTTATGTTCCACATGTTCTTTCTTGCTCGGTACTGCAAGCTTCTTGAAGAGAACTCTTTCAGGGGAAGGACTGCTGATTTCTTTTACATGCTCTTATTTGGCGCCACTGTGTTGACTGGGATAGTTCTGATTGGAGGGATGATACCGTATTTGTCAGAGTCATTTGCGAAGATTATATTCCTCAGCAACTCTCTAACATTCATGATGGTCTATGTGTGGAGCAAGCAAAATCCGTTCATCCATATGAGTTTCTTGGGCCTCTTCACTTTCACAGCAGCTTACCTACCGTGGGTTCTTCTAACGTTCTCTGTCATTGTCGGGGCTAGCGCTTGGGTGGATCTTTTGGGAATGATTGCTGGTCATGCCTATTACTTTCTGGAAGATGTTTACCCGCGAATGACAGGTCGCCGGCCCTTGAGAACCCCTTCTTTTATCAAGGCACTATTCGCAGATGATCCTGTTGTGGTGGCACGACCAGAAAATGTGAGATTTGCACCTCCACCTGTTGAGGAACTTCACCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

245

Amino Acids

28.25

Weight (kDa)

7.77

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 162, 308
AccBSI CCGCTC 1 cut(s) 51
AccII CGCG 1 cut(s) 601
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 3 cut(s) 49, 66, 599
AclI AACGTT 1 cut(s) 509
AclWI GGATC 2 cut(s) 552, 656
AcoI YGGCCR 1 cut(s) 63
AcyI GRCGYC 2 cut(s) 163, 309
AfaI GTAC 3 cut(s) 26, 185, 239
AfeI AGCGCT 1 cut(s) 535
AfiI CCNNNNNNNGG 2 cut(s) 196, 496
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 2 cut(s) 127, 254
AhlI ACTAGT 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 247, 485
AluI AGCT 2 cut(s) 247, 485
AlwI GGATC 2 cut(s) 552, 656
Aor13HI TCCGGA 1 cut(s) 189
Aor51HI AGCGCT 1 cut(s) 535
AoxI GGCC 3 cut(s) 63, 463, 617
ApeKI GCWGC 1 cut(s) 482
ArsI GACNNNNNNTTYG 2 cut(s) 595, 627
Asp700I GAANNNNTTC 2 cut(s) 263, 631
AspLEI GCGC 3 cut(s) 165, 311, 536
AspS9I GGNCC 2 cut(s) 463, 618
AsuHPI GGTGA 4 cut(s) 37, 67, 163, 716
AsuNHI GCTAGC 1 cut(s) 530
BanI GGYRCC 2 cut(s) 162, 308
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 494
BccI CCATC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 78
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 2 cut(s) 137, 531
BfoI RGCGCY 3 cut(s) 166, 312, 537
BisI GCNGC 2 cut(s) 66, 483
BlsI GCNGC 2 cut(s) 67, 484
BmgT120I GGNCC 2 cut(s) 463, 618
BmiI GGNNCC 2 cut(s) 164, 310
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 24
BmtI GCTAGC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 163, 309
BsaJI CCNNGG 1 cut(s) 494
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 496
Bse118I RCCGGY 1 cut(s) 615
Bse1I ACTGG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 2 cut(s) 351, 444
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 196, 496
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 99
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 601
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 65, 465, 619
BshNI GGYRCC 2 cut(s) 162, 308
BsiEI CGRYCG 1 cut(s) 66
BsiSI CCGG 2 cut(s) 190, 616
BslI CCNNNNNNNGG 2 cut(s) 196, 496
BsnI GGCC 3 cut(s) 65, 465, 619
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 544, 661
BspACI CCGC 3 cut(s) 49, 66, 599
BspANI GGCC 3 cut(s) 65, 465, 619
BspCNI CTCAG 1 cut(s) 402
BspEI TCCGGA 1 cut(s) 189
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 164, 310
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 2 cut(s) 552, 656
BspT107I GGYRCC 2 cut(s) 162, 308
BsrBI CCGCTC 1 cut(s) 51
BsrFI RCCGGY 1 cut(s) 615
BsrI ACTGG 1 cut(s) 328
BssAI RCCGGY 1 cut(s) 615
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 2 cut(s) 544, 661
BssNI GRCGYC 2 cut(s) 163, 309
Bst4CI ACNGT 3 cut(s) 316, 354, 495
Bst6I CTCTTC 2 cut(s) 249, 473
BstACI GRCGYC 2 cut(s) 163, 309
BstC8I GCNNGC 4 cut(s) 245, 431, 532, 617
BstDEI CTNAG 1 cut(s) 389
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 2 cut(s) 351, 444
BstFNI CGCG 1 cut(s) 601
BstH2I RGCGCY 3 cut(s) 166, 312, 537
BstHHI GCGC 3 cut(s) 165, 311, 536
BstKTI GATC 2 cut(s) 547, 664
BstMBI GATC 2 cut(s) 544, 661
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 569, 653
BstNSI RCATGY 2 cut(s) 223, 298
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BstZI CGGCCG 1 cut(s) 63
BsuRI GGCC 3 cut(s) 65, 465, 619
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 2 cut(s) 351, 444
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 312
Cac8I GCNNGC 4 cut(s) 245, 431, 532, 617
CciI TCATGA 1 cut(s) 408
CfoI GCGC 3 cut(s) 165, 311, 536
Cfr10I RCCGGY 1 cut(s) 615
Cfr13I GGNCC 2 cut(s) 463, 618
Csp6I GTAC 3 cut(s) 25, 184, 238
CviAII CATG 4 cut(s) 220, 295, 409, 569
CviJI RGCY 7 cut(s) 5, 65, 247, 465, 485, 530, 619
CviKI_1 RGCY 7 cut(s) 5, 65, 247, 465, 485, 530, 619
CviQI GTAC 3 cut(s) 25, 184, 238
DdeI CTNAG 1 cut(s) 389
DinI GGCGCC 2 cut(s) 164, 310
DpnI GATC 2 cut(s) 546, 663
DpnII GATC 2 cut(s) 544, 661
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 249, 473
EarI CTCTTC 2 cut(s) 249, 473
EclXI CGGCCG 1 cut(s) 63
Eco47III AGCGCT 1 cut(s) 535
Eco52I CGGCCG 1 cut(s) 63
EgeI GGCGCC 2 cut(s) 164, 310
EheI GGCGCC 2 cut(s) 164, 310
FaeI CATG 4 cut(s) 223, 298, 412, 572
FatI CATG 4 cut(s) 219, 294, 408, 568
FauI CCCGC 2 cut(s) 56, 606
FauNDI CATATG 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 66, 483
FokI GGATG 2 cut(s) 358, 431
Fsp4HI GCNGC 2 cut(s) 66, 483
FspBI CTAG 2 cut(s) 137, 531
GlaI GCGC 3 cut(s) 164, 310, 535
GluI GCNGC 2 cut(s) 66, 483
HaeII RGCGCY 3 cut(s) 166, 312, 537
HaeIII GGCC 3 cut(s) 65, 465, 619
HapII CCGG 2 cut(s) 190, 616
HhaI GCGC 3 cut(s) 165, 311, 536
Hin1I GRCGYC 2 cut(s) 163, 309
Hin1II CATG 4 cut(s) 223, 298, 412, 572
Hin6I GCGC 3 cut(s) 163, 309, 534
HinP1I GCGC 3 cut(s) 163, 309, 534
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 1 cut(s) 365
HpaII CCGG 2 cut(s) 190, 616
HphI GGTGA 4 cut(s) 37, 67, 163, 716
Hpy166II GTNNAC 2 cut(s) 321, 595
Hpy188I TCNGA 2 cut(s) 336, 364
Hpy188III TCNNGA 4 cut(s) 190, 251, 409, 584
Hpy8I GTNNAC 2 cut(s) 321, 595
HpyAV CCTTC 2 cut(s) 267, 642
HpyCH4III ACNGT 3 cut(s) 316, 354, 495
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 2 cut(s) 243, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 653
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 509
Hsp92I GRCGYC 2 cut(s) 163, 309
Hsp92II CATG 4 cut(s) 223, 298, 412, 572
HspAI GCGC 3 cut(s) 163, 309, 534
KasI GGCGCC 2 cut(s) 162, 308
Kpn2I TCCGGA 1 cut(s) 189
KroI GCCGGC 1 cut(s) 615
KroNI GCCGGC 1 cut(s) 617
Kzo9I GATC 2 cut(s) 544, 661
LmnI GCTCC 3 cut(s) 56, 95, 426
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 1 cut(s) 24
MaeI CTAG 2 cut(s) 137, 531
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 2 cut(s) 73, 169
MalI GATC 2 cut(s) 546, 663
MbiI CCGCTC 1 cut(s) 51
MboI GATC 2 cut(s) 544, 661
MboII GAAGA 5 cut(s) 266, 388, 460, 494, 599
MflI RGATCY 1 cut(s) 544
MluCI AATT 2 cut(s) 155, 175
Mly113I GGCGCC 2 cut(s) 163, 309
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 9 cut(s) 10, 104, 120, 176, 335, 398, 476, 709, 714
MroI TCCGGA 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 615
MroXI GAANNNNTTC 2 cut(s) 263, 631
MseI TTAA 1 cut(s) 733
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 190, 616
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 569, 653
NaeI GCCGGC 1 cut(s) 617
NarI GGCGCC 2 cut(s) 163, 309
NdeI CATATG 1 cut(s) 450
NdeII GATC 2 cut(s) 544, 661
NgoMIV GCCGGC 1 cut(s) 615
NheI GCTAGC 1 cut(s) 530
NlaIII CATG 4 cut(s) 223, 298, 412, 572
NlaIV GGNNCC 2 cut(s) 164, 310
NmuCI GTSAC 2 cut(s) 73, 169
NspI RCATGY 2 cut(s) 223, 298
PagI TCATGA 1 cut(s) 408
PciI ACATGT 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 617
PdmI GAANNNNTTC 2 cut(s) 263, 631
PkrI GCNGC 2 cut(s) 67, 484
PleI GAGTC 1 cut(s) 373
PluTI GGCGCC 2 cut(s) 166, 312
PpsI GAGTC 1 cut(s) 373
PscI ACATGT 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 509
PspN4I GGNNCC 2 cut(s) 164, 310
PspPI GGNCC 2 cut(s) 463, 618
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 3 cut(s) 26, 185, 239
RsaNI GTAC 3 cut(s) 25, 184, 238
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 733
SatI GCNGC 2 cut(s) 66, 483
Sau3AI GATC 2 cut(s) 544, 661
Sau96I GGNCC 2 cut(s) 463, 618
SchI GAGTC 1 cut(s) 374
SetI ASST 7 cut(s) 249, 487, 492, 512, 613, 706, 712
SfaNI GCATC 1 cut(s) 24
SfoI GGCGCC 2 cut(s) 164, 310
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 6, 622
SmoI CTYRAG 2 cut(s) 6, 622
SpeI ACTAGT 1 cut(s) 136
Sse9I AATT 2 cut(s) 155, 175
SsiI CCGC 3 cut(s) 49, 66, 599
SspDI GGCGCC 2 cut(s) 162, 308
SspMI CTAG 2 cut(s) 137, 531
TaaI ACNGT 3 cut(s) 316, 354, 495
TaiI ACGT 1 cut(s) 512
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 155, 175
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 733
Tru9I TTAA 1 cut(s) 733
TscAI CASTG 2 cut(s) 18, 319
TseFI GTSAC 2 cut(s) 73, 169
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 2 cut(s) 73, 169
TspDTI ATGAA 2 cut(s) 397, 433
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 2 cut(s) 18, 319
XceI RCATGY 2 cut(s) 223, 298
XmnI GAANNNNTTC 2 cut(s) 263, 631
XspI CTAG 2 cut(s) 137, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.