Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011158

Physical Location & Seq

Genomic Coordinates Reverse (-)

28111679 .. 28113414

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26990.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTCAGGCAGTCGAAGAATGGTACAAGCAGATGCCCGTCATCACCCGCTCGTACCTCACCGCAGCTGTTCTCACCAACATCGGTTGCTCCCTCGACATAATTTCTCCTCACAATCTGTACTTGAACCCTAATCTAGTGGTCAAGCAGTATCAATTCTGGCGGCTCGTTACTAATTTCCTTTACTTCCGGAAAATGGACTTGGATTTCATGTTCCACATGTTCTTTCTTGCTCGGTACTGCAAGCTTCTTGAAGAGAACTCTTTTCGAGGACGGACTGCGGATTTCTTTTATATGCTCTTATTTGGTGCCACTATGTTGACTGGGATAGTTCTGGTTGGAGGGATGATACCTCATTTGTCTGAGTCGTTTGCAAAGATTATATTCCTCAGCAACTCACTAACGTTCATGATGGTCTATGTGTGGAGCAAGCAAAATCCTTTCATTCATATGAGCTTCTTGGGCCTCTTTACCTTCACAGCAGCTTACCTACCTTGGGTTCTTCTGACGTTCTCCGTCTTGGTCGGAGCTAGCCCTTGGGTGGATCTTTTGGGAATGATTGCCGGTCATGCCTATTACTTTCTAGAAGATGTTTACCCACGAATGACAGGTCGCCGGCCCTTGAGAACCCCTTCACTTATCAAAGCACTATTTGCCGATGACCCTGTTGTGGTGGCACGACCAAATGTGAGATTTGCACCACCACCCGTGGAGGAACTTCACCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DER1

Protein Analysis

244

Amino Acids

28.1

Weight (kDa)

8.49

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04860 AT4G21810
fragaria_vesca	FvH4_3g02350
malus_domestica	MD05G1343600.v1.1 MD10G1318700.v1.1
prunus_persica	Prupe.4G023300_v2.0.a1 Prupe.4G023300_v2.0.a1
pyrus_communis	pycom05g31300 pycom10g26990
rosa_chinensis	RchiOBHm_Chr5g0003571
rosa_laevigata	RLG00000031153
rosa_multiflora	Rmu_sc0004279.1_g000005 Rmu_sc0015897.1_g000001 Rmu_sc0022447.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072390
rosa_rugosa	Rorug04G0404500 Rorug04G0404600
rosa_samantha	Rh5AG031500 Rh5BG030400
rosa_wichuraiana	Rw5G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	4 cut(s)	49, 63, 163, 281
AclI	AACGTT	1 cut(s)	404
AclWI	GGATC	1 cut(s)	552
AfaI	GTAC	4 cut(s)	26, 56, 122, 239
AfiI	CCNNNNNNNGG	4 cut(s)	196, 496, 541, 670
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	127, 254
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	68, 247, 456, 485, 530
AluI	AGCT	5 cut(s)	68, 247, 456, 485, 530
AlwI	GGATC	1 cut(s)	552
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	2 cut(s)	463, 617
ApeKI	GCWGC	2 cut(s)	65, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	1 cut(s)	631
AspS9I	GGNCC	2 cut(s)	463, 618
AsuHPI	GGTGA	4 cut(s)	37, 52, 67, 713
AsuNHI	GCTAGC	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	2 cut(s)	77, 494
BccI	CCATC	1 cut(s)	406
BfaI	CTAG	3 cut(s)	137, 531, 584
BisI	GCNGC	3 cut(s)	66, 164, 483
BlsI	GCNGC	3 cut(s)	67, 165, 484
BmgT120I	GGNCC	2 cut(s)	463, 618
BmiI	GGNNCC	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	24
BmtI	GCTAGC	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	333
Bpu10I	CCTNAGC	2 cut(s)	6, 389
BpuEI	CTTGAG	1 cut(s)	643
BsaJI	CCNNGG	3 cut(s)	494, 536, 708
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 496, 541, 670
Bse118I	RCCGGY	2 cut(s)	563, 615
Bse1I	ACTGG	1 cut(s)	328
BseAI	TCCGGA	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	494, 536, 708
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	4 cut(s)	196, 496, 541, 670
BseMII	CTCAG	3 cut(s)	20, 354, 403
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	77, 494
BshFI	GGCC	2 cut(s)	465, 619
BshNI	GGYRCC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	190, 564, 616
BslI	CCNNNNNNNGG	4 cut(s)	196, 496, 541, 670
BsnI	GGCC	2 cut(s)	465, 619
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	544
BspACI	CCGC	4 cut(s)	49, 63, 163, 281
BspANI	GGCC	2 cut(s)	465, 619
BspCNI	CTCAG	3 cut(s)	19, 355, 402
BspEI	TCCGGA	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	310
BspOI	GCTAGC	1 cut(s)	534
BspPI	GGATC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	51
BsrFI	RCCGGY	2 cut(s)	563, 615
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	2 cut(s)	563, 615
BssECI	CCNNGG	3 cut(s)	494, 536, 708
BssMI	GATC	1 cut(s)	544
BssT1I	CCWWGG	2 cut(s)	494, 536
Bst6I	CTCTTC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstC8I	GCNNGC	4 cut(s)	245, 431, 532, 617
BstDEI	CTNAG	3 cut(s)	6, 363, 389
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	547
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	3 cut(s)	462, 569, 653
BstNSI	RCATGY	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	77, 494
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	465, 619
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	1 cut(s)	351
Cac8I	GCNNGC	4 cut(s)	245, 431, 532, 617
CciI	TCATGA	1 cut(s)	408
Cfr10I	RCCGGY	2 cut(s)	563, 615
Cfr13I	GGNCC	2 cut(s)	463, 618
Csp6I	GTAC	4 cut(s)	25, 55, 121, 238
CviAII	CATG	4 cut(s)	211, 220, 409, 569
CviQI	GTAC	4 cut(s)	25, 55, 121, 238
DdeI	CTNAG	3 cut(s)	6, 363, 389
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	494, 536
EcoT14I	CCWWGG	2 cut(s)	494, 536
ErhI	CCWWGG	2 cut(s)	494, 536
FaeI	CATG	4 cut(s)	214, 223, 412, 572
FatI	CATG	4 cut(s)	210, 219, 408, 568
FauI	CCCGC	1 cut(s)	56
FauNDI	CATATG	1 cut(s)	450
Fnu4HI	GCNGC	3 cut(s)	66, 164, 483
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	3 cut(s)	66, 164, 483
FspBI	CTAG	3 cut(s)	137, 531, 584
GluI	GCNGC	3 cut(s)	66, 164, 483
HaeIII	GGCC	2 cut(s)	465, 619
HapII	CCGG	3 cut(s)	190, 564, 616
Hin1II	CATG	4 cut(s)	214, 223, 412, 572
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	3 cut(s)	190, 564, 616
HphI	GGTGA	4 cut(s)	37, 52, 67, 713
Hpy166II	GTNNAC	2 cut(s)	321, 595
Hpy188I	TCNGA	3 cut(s)	364, 507, 527
Hpy188III	TCNNGA	4 cut(s)	190, 251, 409, 584
Hpy8I	GTNNAC	2 cut(s)	321, 595
HpyAV	CCTTC	2 cut(s)	484, 642
HpyCH4IV	ACGT	2 cut(s)	404, 509
HpyCH4V	TGCA	3 cut(s)	243, 374, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	462, 569, 653
HpyF3I	CTNAG	3 cut(s)	6, 363, 389
HpySE526I	ACGT	2 cut(s)	404, 509
Hsp92II	CATG	4 cut(s)	214, 223, 412, 572
Kpn2I	TCCGGA	1 cut(s)	189
KroI	GCCGGC	1 cut(s)	615
KroNI	GCCGGC	1 cut(s)	617
Kzo9I	GATC	1 cut(s)	544
LmnI	GCTCC	3 cut(s)	95, 426, 527
LpnPI	CCDG	8 cut(s)	145, 203, 309, 320, 577, 594, 629, 678
Lsp1109I	GCAGC	2 cut(s)	77, 494
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	3 cut(s)	137, 531, 584
MaeII	ACGT	2 cut(s)	404, 509
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	546
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	1 cut(s)	544
MboII	GAAGA	4 cut(s)	29, 266, 494, 599
MflI	RGATCY	1 cut(s)	544
MluCI	AATT	3 cut(s)	102, 155, 175
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	2 cut(s)	319, 505
MnlI	CCTC	9 cut(s)	68, 104, 120, 263, 335, 363, 398, 476, 706
MroI	TCCGGA	1 cut(s)	189
MroNI	GCCGGC	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	631
MseI	TTAA	1 cut(s)	730
MslI	CAYNNNNRTG	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	3 cut(s)	190, 564, 616
MwoI	GCNNNNNNNGC	3 cut(s)	462, 569, 653
NaeI	GCCGGC	1 cut(s)	617
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	1 cut(s)	544
NgoMIV	GCCGGC	1 cut(s)	615
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	4 cut(s)	214, 223, 412, 572
NlaIV	GGNNCC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	223
PagI	TCATGA	1 cut(s)	408
PciI	ACATGT	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	617
PdmI	GAANNNNTTC	1 cut(s)	631
PkrI	GCNGC	3 cut(s)	67, 165, 484
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PscI	ACATGT	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	2 cut(s)	463, 618
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	4 cut(s)	26, 56, 122, 239
RsaNI	GTAC	4 cut(s)	25, 55, 121, 238
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	730
SatI	GCNGC	3 cut(s)	66, 164, 483
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	2 cut(s)	463, 618
SchI	GAGTC	1 cut(s)	374
SfaNI	GCATC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	3 cut(s)	102, 155, 175
SsiI	CCGC	4 cut(s)	49, 63, 163, 281
SspMI	CTAG	3 cut(s)	137, 531, 584
StyI	CCWWGG	2 cut(s)	494, 536
TaiI	ACGT	2 cut(s)	407, 512
TaqI	TCGA	3 cut(s)	15, 96, 268
TasI	AATT	3 cut(s)	102, 155, 175
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	730
Tru9I	TTAA	1 cut(s)	730
TseI	GCWGC	2 cut(s)	65, 482
TspDTI	ATGAA	4 cut(s)	199, 397, 433, 437
TspGWI	ACGGA	2 cut(s)	289, 505
XbaI	TCTAGA	1 cut(s)	583
XceI	RCATGY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	631
XspI	CTAG	3 cut(s)	137, 531, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.