AT4G04930

DES1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015507
Physical Location & Seq
Forward (+)
2509053 .. 2511145
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04930.1

Sequence Viewer

Length: 999 bp
ATGGGGAAAGGAGGACGTGAGAAGATATCATCAAACGAAGAAGAAAGAGAAGGAGTCATGGCTACAGATTTCTTTTGGTCTTACACCGATGAGCCTCATGCTTCGAGGAGACGTCAGATTCTGTCTTGTTACCCTCAGATTAGACAACTCTTTGGTCCTGATCCATGGGCTTTCCTCAAGATCACATTAGTAGTAATTCTTCAACTCTCAACAGCTGCAATCCTTCACAACTCTGGATGGCTCAAGATTCTATCCATTGCTTACTTCTTTGGATCATTCCTCAACCACAATCTCTTCTTAGCAATCCATGAGCTAAGTCACAACCTTGCCTTTTCAACTCCTGTCTACAATCGTTGTCTCGGTATTTTCGCAAATCTCCCAATCGGTGTACCAATGTCAGTAACTTTCCAAAAATACCATCTCGAGCATCATCGGTTCCAAGGAGTAGATGGTATTGACATGGATGTTCCTACTTACACCGAAGCTCATTTAGTAACCAATATCTTTGCCAAAACAATTTGGGTTTTCTTACAACTCTTCTTTTACGCTCTTCGTCCTATCTTCATCAAACCAAAACCACCTGGCTACTGGGAGTTCATCAACTTCTTGATTCAGATTGTTTTAGATGTATCAGTTGTTCTCTTCTTCGGATGGAGATCTTTCGCGTATCTAATCTTATCGACATTTGTTGGAGGCGGTATGCATCCAATGGCGGGACATTTTATCTCGGAACATTATGTTTTTAACCCGAATCAAGAGACTTATTCGTATTACGGTCCATTGAATCTACTAACATGGAGTGTTGGTTACCATAACGAGCATCACGATTTCCCGAGGATACCGGGAAATAAGCTGCATTTGGTGAAGGAGATTGCAGGAGAGTATTATGAAGGATTGGAGTCGTATAAGTCATGGTCACAAGTGATTTATATGTATATTATGGATACAACAGTTGGTCCTTATAGCAGAATGAAGAGGAAGCTCTCAAAGTCTGACTAA

Protein Analysis

332

Amino Acids

38.51

Weight (kDa)

7.3

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipid_DES PF08557 21 - 56 4.1e-19 Sphingolipid Delta4-desaturase (DES)
FA_desaturase PF00487 79 - 297 3.3e-23 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04930
fragaria_vesca FvH4_3g04930
malus_domestica MD10G1295900.v1.1
prunus_persica Prupe.4G044600_v2.0.a1
pyrus_communis pycom10g24850
rosa_chinensis RchiOBHm_Chr5g0008091
rosa_laevigata RLG00000031535
rosa_multiflora Rmu_sc0017465.1_g000005 Rmu_sc0039673.1_g000001
rosa_roxburghii Rroxscaffold_1G00068390
rosa_rugosa Rorug04G0433300
rosa_samantha Rh5AG061400 Rh5BG058200 Rh5CG068300 Rh5DG057500
rosa_wichuraiana Rw5G005920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 345
AccII CGCG 1 cut(s) 665
AciI CCGC 2 cut(s) 696, 713
AclWI GGATC 2 cut(s) 155, 280
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 713
AgsI TTSAA 3 cut(s) 203, 336, 784
AjiI CACGTC 1 cut(s) 17
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 5 cut(s) 215, 313, 485, 853, 982
AluI AGCT 5 cut(s) 215, 313, 485, 853, 982
Alw26I GTCTC 3 cut(s) 103, 362, 752
AlwI GGATC 2 cut(s) 155, 280
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 2 cut(s) 422, 832
ApeKI GCWGC 2 cut(s) 215, 853
AspS9I GGNCC 3 cut(s) 155, 776, 956
AsuC2I CCSGG 1 cut(s) 843
AsuHPI GGTGA 1 cut(s) 874
AvaI CYCGRG 2 cut(s) 422, 832
AvaII GGWCC 3 cut(s) 155, 776, 956
BaeI ACNNNNGTAYC 2 cut(s) 936, 969
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BbvI GCAGC 2 cut(s) 202, 840
BccI CCATC 4 cut(s) 231, 426, 443, 645
BciT130I CCWGG 1 cut(s) 582
BciVI GTATCC 2 cut(s) 831, 937
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 3 cut(s) 103, 362, 752
BfmI CTRYAG 1 cut(s) 63
BfuI GTATCC 2 cut(s) 831, 937
BglII AGATCT 1 cut(s) 656
BisI GCNGC 2 cut(s) 216, 854
BlsI GCNGC 2 cut(s) 217, 855
Bme1390I CCNGG 2 cut(s) 582, 843
Bme18I GGWCC 3 cut(s) 155, 776, 956
BmeT110I CYCGRG 2 cut(s) 422, 832
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 3 cut(s) 155, 776, 956
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 582, 843
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 3 cut(s) 436, 712, 829
BmuI ACTGGG 1 cut(s) 598
BpuEI CTTGAG 2 cut(s) 161, 227
BpuMI CCSGG 1 cut(s) 843
BsaBI GATNNNNATC 1 cut(s) 655
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 3 cut(s) 164, 439, 833
BsaXI ACNNNNNCTCC 2 cut(s) 790, 820
Bsc4I CCNNNNNNNGG 1 cut(s) 713
Bse1I ACTGG 1 cut(s) 593
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 655
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 3 cut(s) 164, 439, 833
BseGI GGATG 4 cut(s) 242, 469, 656, 703
BseJI GATNNNNATC 1 cut(s) 655
BseLI CCNNNNNNNGG 1 cut(s) 713
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 2 cut(s) 202, 840
Bsh1236I CGCG 1 cut(s) 665
BsiHKCI CYCGRG 2 cut(s) 422, 832
BsiSI CCGG 1 cut(s) 842
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 1 cut(s) 713
BsmAI GTCTC 3 cut(s) 103, 362, 752
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 729
BsoBI CYCGRG 2 cut(s) 422, 832
Bsp143I GATC 4 cut(s) 160, 180, 272, 656
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 2 cut(s) 696, 713
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 665
BspLI GGNNCC 1 cut(s) 437
BspPI GGATC 2 cut(s) 155, 280
BspQI GCTCTTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 3 cut(s) 164, 439, 833
BssMI GATC 4 cut(s) 160, 180, 272, 656
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 2 cut(s) 164, 439
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 776, 952
Bst6I CTCTTC 5 cut(s) 299, 542, 555, 647, 968
BstACI GRCGYC 1 cut(s) 112
BstDEI CTNAG 3 cut(s) 135, 298, 314
BstDSI CCRYGG 1 cut(s) 164
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 4 cut(s) 242, 469, 656, 703
BstFNI CGCG 1 cut(s) 665
BstKTI GATC 4 cut(s) 163, 183, 275, 659
BstMAI GTCTC 3 cut(s) 103, 362, 752
BstMBI GATC 4 cut(s) 160, 180, 272, 656
BstNI CCWGG 1 cut(s) 582
BstPI GGTNACC 1 cut(s) 806
BstSCI CCNGG 2 cut(s) 580, 841
BstSFI CTRYAG 1 cut(s) 63
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 2 cut(s) 202, 840
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
BsuI GTATCC 2 cut(s) 831, 937
BtgI CCRYGG 1 cut(s) 164
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 4 cut(s) 242, 469, 656, 703
CaiI CAGNNNCTG 1 cut(s) 121
Cfr13I GGNCC 3 cut(s) 155, 776, 956
Csp6I GTAC 1 cut(s) 389
CviAII CATG 7 cut(s) 58, 98, 165, 308, 460, 795, 912
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 3 cut(s) 135, 298, 314
DpnI GATC 4 cut(s) 162, 182, 274, 658
DpnII GATC 4 cut(s) 160, 180, 272, 656
Eam1104I CTCTTC 5 cut(s) 299, 542, 555, 647, 968
EarI CTCTTC 5 cut(s) 299, 542, 555, 647, 968
Eco130I CCWWGG 2 cut(s) 164, 439
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 3 cut(s) 155, 776, 956
Eco88I CYCGRG 2 cut(s) 422, 832
Eco91I GGTNACC 1 cut(s) 806
EcoO65I GGTNACC 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 580
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 164, 439
EcoT22I ATGCAT 1 cut(s) 705
ErhI CCWWGG 2 cut(s) 164, 439
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 7 cut(s) 61, 101, 168, 311, 463, 798, 915
FaqI GGGAC 1 cut(s) 729
FatI CATG 7 cut(s) 57, 97, 164, 307, 459, 794, 911
FauI CCCGC 1 cut(s) 706
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 216, 854
FokI GGATG 4 cut(s) 249, 476, 663, 690
Fsp4HI GCNGC 2 cut(s) 216, 854
GluI GCNGC 2 cut(s) 216, 854
HapII CCGG 1 cut(s) 842
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 7 cut(s) 61, 101, 168, 311, 463, 798, 915
HinfI GANTC 7 cut(s) 54, 118, 247, 610, 751, 784, 899
HpaII CCGG 1 cut(s) 842
HphI GGTGA 1 cut(s) 874
Hpy166II GTNNAC 2 cut(s) 346, 389
Hpy188I TCNGA 6 cut(s) 117, 138, 615, 650, 730, 994
Hpy188III TCNNGA 9 cut(s) 158, 178, 234, 244, 422, 607, 755, 824, 832
Hpy8I GTNNAC 2 cut(s) 346, 389
HpyAV CCTTC 4 cut(s) 44, 233, 859, 884
HpyCH4III ACNGT 2 cut(s) 776, 952
HpyCH4IV ACGT 2 cut(s) 16, 112
HpyCH4V TGCA 4 cut(s) 218, 703, 856, 875
HpyF3I CTNAG 3 cut(s) 135, 298, 314
HpySE526I ACGT 2 cut(s) 16, 112
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 7 cut(s) 61, 101, 168, 311, 463, 798, 915
Kzo9I GATC 4 cut(s) 160, 180, 272, 656
LguI GCTCTTC 1 cut(s) 555
LpnPI CCDG 8 cut(s) 171, 219, 354, 567, 574, 594, 855, 861
Lsp1109I GCAGC 2 cut(s) 202, 840
LweI GCATC 3 cut(s) 436, 712, 829
MaeII ACGT 2 cut(s) 16, 112
MaeIII GTNAC 6 cut(s) 128, 317, 400, 493, 806, 915
MalI GATC 4 cut(s) 162, 182, 274, 658
MboI GATC 4 cut(s) 160, 180, 272, 656
MflI RGATCY 1 cut(s) 656
MluCI AATT 2 cut(s) 195, 516
MlyI GAGTC 2 cut(s) 63, 908
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 9 cut(s) 5, 99, 105, 144, 185, 290, 686, 828, 969
Mph1103I ATGCAT 1 cut(s) 705
MseI TTAA 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 842
MspR9I CCNGG 2 cut(s) 582, 843
MvaI CCWGG 1 cut(s) 582
MvnI CGCG 1 cut(s) 665
NciI CCSGG 1 cut(s) 843
NcoI CCATGG 1 cut(s) 164
NdeII GATC 4 cut(s) 160, 180, 272, 656
NlaIII CATG 7 cut(s) 61, 101, 168, 311, 463, 798, 915
NlaIV GGNNCC 1 cut(s) 437
NmuCI GTSAC 2 cut(s) 317, 915
NsiI ATGCAT 1 cut(s) 705
PaeR7I CTCGAG 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 822
PfeI GAWTC 5 cut(s) 118, 247, 610, 751, 784
PkrI GCNGC 2 cut(s) 217, 855
PleI GAGTC 2 cut(s) 62, 907
PpsI GAGTC 2 cut(s) 62, 907
Psp6I CCWGG 1 cut(s) 580
PspEI GGTNACC 1 cut(s) 806
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 3 cut(s) 155, 776, 956
PsrI GAACNNNNNNTAC 2 cut(s) 621, 653
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 2 cut(s) 216, 854
Sau3AI GATC 4 cut(s) 160, 180, 272, 656
Sau96I GGNCC 3 cut(s) 155, 776, 956
SchI GAGTC 2 cut(s) 63, 908
ScrFI CCNGG 2 cut(s) 582, 843
SetI ASST 9 cut(s) 19, 115, 217, 315, 327, 487, 583, 855, 984
SfaNI GCATC 3 cut(s) 436, 712, 829
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 422
SinI GGWCC 3 cut(s) 155, 776, 956
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 3 cut(s) 176, 242, 422
SmoI CTYRAG 3 cut(s) 176, 242, 422
Sse9I AATT 2 cut(s) 195, 516
SsiI CCGC 2 cut(s) 696, 713
StyD4I CCNGG 2 cut(s) 580, 841
StyI CCWWGG 2 cut(s) 164, 439
TaaI ACNGT 2 cut(s) 776, 952
TaiI ACGT 2 cut(s) 19, 115
TaqI TCGA 3 cut(s) 104, 423, 680
TasI AATT 2 cut(s) 195, 516
TfiI GAWTC 5 cut(s) 118, 247, 610, 751, 784
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TseFI GTSAC 2 cut(s) 317, 915
TseI GCWGC 2 cut(s) 215, 853
Tsp45I GTSAC 2 cut(s) 317, 915
TspDTI ATGAA 4 cut(s) 553, 586, 903, 986
VpaK11BI GGWCC 3 cut(s) 155, 776, 956
XcmI CCANNNNNNNNNTGG 2 cut(s) 446, 585
XhoI CTCGAG 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 345
ZraI GACGTC 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.