Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Reverse (-)

59136571 .. 59139667

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0433300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGACTCGCGTTTACGTTGGGAATTTGGATCCTCGAGTGAGTGATAGGGATCTTGAAGATGAGTTTCGCATGTTCGGCGTTCTTCGCAGTGTGTGGGTTGCTCGGAGGCCACCGGGATATGCCTTTGTTGAATTTGATGATCACAGGGATGCTCTTGATGCAATTCAGAGATTGGATGGAAAAAATGGTTGGCGTGTGGAACTGTCCCATAACTCCTCTAAGGGTGGTGGTGGTGGTGGTGGTGGAGGCCGTGGTGGTGGAGGTGACGACTTGAAGTGTTATGAATGTGGTGAACCCGGTCACTTTGCTAGAGAGTGTCGTATGCGTGTGGGTTCACGAGGATTGGGTAGCGGAAGGCGCAGAAGTCCTTCCCCTCGACGTGGCCGCAGAAGTCCCAGTTACGATGGTTATGGGCGCAGGACTTATAGTCCACGTAGGAGGAGATCTCCTCCTCTACGACGTCGCACCCCATCACCTCTGCCTCGACGTGGACGCAGCTACAGCAGGTCCCCCCCATACCGCCATGCTCGACGTGTTTCTCCTTATGCCAATGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016491 GO:0016705 GO:0030148 GO:0034641 GO:0042284 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0046467 GO:0046513 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

FA_desaturase Lipid_DES

Protein Analysis

186

Amino Acids

20.96

Weight (kDa)

11.24

Isoelectric Point (pI)

104.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	3.5e-16	RNA recognition motif
zf-CCHC	PF00098	92 - 107	1.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	495
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	351, 385, 520
AclWI	GGATC	3 cut(s)	23, 36, 57
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	22, 131
AcyI	GRCGYC	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	380, 488
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	3 cut(s)	56, 131, 274
AhdI	GACNNNNNGTC	1 cut(s)	426
AjiI	CACGTC	3 cut(s)	380, 488, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	1 cut(s)	498
AluI	AGCT	1 cut(s)	498
AlwI	GGATC	3 cut(s)	23, 36, 57
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	3 cut(s)	107, 247, 382
ApeKI	GCWGC	1 cut(s)	495
ApoI	RAATTY	2 cut(s)	22, 131
Asp700I	GAANNNNTTC	1 cut(s)	367
AspLEI	GCGC	2 cut(s)	360, 417
AspS9I	GGNCC	1 cut(s)	507
AsuC2I	CCSGG	2 cut(s)	114, 297
AsuHPI	GGTGA	3 cut(s)	275, 302, 465
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	3 cut(s)	170, 398, 478
BceAI	ACGGC	1 cut(s)	234
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	114, 297
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	495
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	2 cut(s)	385, 496
BlsI	GCNGC	2 cut(s)	386, 497
Bme1390I	CCNGG	2 cut(s)	114, 297
Bme18I	GGWCC	1 cut(s)	507
BmeRI	GACNNNNNGTC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	33
BmgBI	CACGTC	3 cut(s)	380, 488, 533
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	2 cut(s)	30, 509
BmrFI	CCNGG	2 cut(s)	114, 297
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	139, 148
BmuI	ACTGGG	1 cut(s)	390
BplI	GAGNNNNNCTC	4 cut(s)	430, 462, 433, 465
BpuMI	CCSGG	2 cut(s)	114, 297
BsaAI	YACGTR	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	460
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 488
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	154, 181
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	380, 488
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	4 cut(s)	205, 438, 441, 454
BseXI	GCAGC	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	109, 249, 384
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	113, 297
BslFI	GGGAC	3 cut(s)	190, 378, 493
BslI	CCNNNNNNNGG	2 cut(s)	380, 488
BsmFI	GGGAC	3 cut(s)	190, 378, 493
BsnI	GGCC	3 cut(s)	109, 249, 384
BsoBI	CYCGRG	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	28, 49, 139, 443
BspACI	CCGC	3 cut(s)	351, 385, 520
BspANI	GGCC	3 cut(s)	109, 249, 384
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	30, 509
BspMI	ACCTGC	1 cut(s)	495
BspPI	GGATC	3 cut(s)	23, 36, 57
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	28, 49, 139, 443
BssNI	GRCGYC	1 cut(s)	460
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	460
BstBAI	YACGTR	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	154, 181
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	360, 417
BstKTI	GATC	4 cut(s)	31, 52, 142, 446
BstMBI	GATC	4 cut(s)	28, 49, 139, 443
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 357, 501
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	112, 295
BstSFI	CTRYAG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	507
BstX2I	RGATCY	3 cut(s)	28, 49, 443
BstYI	RGATCY	3 cut(s)	28, 49, 443
BsuRI	GGCC	3 cut(s)	109, 249, 384
BtgI	CCRYGG	1 cut(s)	250
BtrI	CACGTC	3 cut(s)	380, 488, 533
BtsCI	GGATG	2 cut(s)	154, 181
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	495
CfoI	GCGC	2 cut(s)	360, 417
Cfr13I	GGNCC	1 cut(s)	507
CseI	GACGC	1 cut(s)	501
CviAII	CATG	2 cut(s)	70, 524
CviJI	RGCY	4 cut(s)	109, 249, 384, 498
CviKI_1	RGCY	4 cut(s)	109, 249, 384, 498
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	4 cut(s)	30, 51, 141, 445
DpnII	GATC	4 cut(s)	28, 49, 139, 443
DriI	GACNNNNNGTC	1 cut(s)	426
EaeI	YGGCCR	1 cut(s)	382
Eam1105I	GACNNNNNGTC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	507
FaeI	CATG	2 cut(s)	73, 527
FaqI	GGGAC	3 cut(s)	190, 378, 493
FatI	CATG	2 cut(s)	69, 523
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	385, 496
FokI	GGATG	2 cut(s)	161, 188
Fsp4HI	GCNGC	2 cut(s)	385, 496
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	359, 416
GluI	GCNGC	2 cut(s)	385, 496
HaeIII	GGCC	3 cut(s)	109, 249, 384
HapII	CCGG	2 cut(s)	113, 297
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	2 cut(s)	360, 417
Hin1I	GRCGYC	1 cut(s)	460
Hin1II	CATG	2 cut(s)	73, 527
Hin6I	GCGC	2 cut(s)	358, 415
HinP1I	GCGC	2 cut(s)	358, 415
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	113, 297
HphI	GGTGA	3 cut(s)	275, 302, 465
Hpy166II	GTNNAC	5 cut(s)	13, 293, 335, 431, 491
Hpy188I	TCNGA	2 cut(s)	105, 168
Hpy188III	TCNNGA	3 cut(s)	53, 155, 336
Hpy8I	GTNNAC	5 cut(s)	13, 293, 335, 431, 491
Hpy99I	CGWCG	5 cut(s)	381, 462, 465, 489, 534
HpyAV	CCTTC	2 cut(s)	348, 378
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	6 cut(s)	15, 379, 433, 460, 487, 532
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 357, 501
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	6 cut(s)	15, 379, 433, 460, 487, 532
Hsp92I	GRCGYC	1 cut(s)	460
Hsp92II	CATG	2 cut(s)	73, 527
HspAI	GCGC	2 cut(s)	358, 415
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	28, 49, 139, 443
LpnPI	CCDG	6 cut(s)	126, 130, 310, 403, 409, 490
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	2 cut(s)	139, 148
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	6 cut(s)	15, 379, 433, 460, 487, 532
MaeIII	GTNAC	3 cut(s)	263, 299, 398
MalI	GATC	4 cut(s)	30, 51, 141, 445
MboI	GATC	4 cut(s)	28, 49, 139, 443
MboII	GAAGA	2 cut(s)	68, 74
MflI	RGATCY	3 cut(s)	28, 49, 443
MluCI	AATT	3 cut(s)	22, 131, 162
MroXI	GAANNNNTTC	1 cut(s)	367
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	2 cut(s)	113, 297
MspR9I	CCNGG	2 cut(s)	114, 297
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 357, 501
NciI	CCSGG	2 cut(s)	114, 297
NdeII	GATC	4 cut(s)	28, 49, 139, 443
NlaIII	CATG	2 cut(s)	73, 527
NlaIV	GGNNCC	2 cut(s)	30, 509
NmuCI	GTSAC	2 cut(s)	263, 299
NspI	RCATGY	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	386, 497
Ppu21I	YACGTR	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	507
Psp5II	RGGWCCY	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	30, 509
PspPI	GGNCC	1 cut(s)	507
PspPPI	RGGWCCY	1 cut(s)	507
PspXI	VCTCGAGB	1 cut(s)	33
PsuI	RGATCY	3 cut(s)	28, 49, 443
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	2 cut(s)	385, 496
Sau3AI	GATC	4 cut(s)	28, 49, 139, 443
Sau96I	GGNCC	1 cut(s)	507
ScrFI	CCNGG	2 cut(s)	114, 297
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	1 cut(s)	499
Sfr274I	CTCGAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	507
SlaI	CTCGAG	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	3 cut(s)	22, 131, 162
SsiI	CCGC	3 cut(s)	351, 385, 520
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	112, 295
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	6 cut(s)	18, 382, 436, 463, 490, 535
TaqI	TCGA	4 cut(s)	34, 376, 484, 529
TasI	AATT	3 cut(s)	22, 131, 162
TauI	GCSGC	1 cut(s)	387
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	2 cut(s)	263, 299
TseI	GCWGC	1 cut(s)	495
Tsp45I	GTSAC	2 cut(s)	263, 299
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	2 cut(s)	22, 131
XceI	RCATGY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	1 cut(s)	309
ZraI	GACGTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.