Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Reverse (-)

44459855 .. 44463137

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1314700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTATATAGCTTCAATGCGAAAGTCGTTCAAGGACTCTCTGAAAGTTCTTGAAGCTGATATTCAGCATGCAAATACTCTGGCCTCAGATTTTCCGAGGGAGTATGATGGTGCTTGTCTTCAGATGAGAATGTCGTACAGTCCAGCCGCTCATCTCTTCCTTTTTCTGGTGCAATGGACTGACTGCAACCTTGCGGGAGCCCTCGGGCTGTTAAGAATTTTAATTTACAAGGTTTATGTGGATGGCTCGACCACCATGTCTACCAAGGAAAGGAAAGCAAGCATCAGAGAGTTCTATGCTGTTATTTATCCCTCTTTATTGCAACTTCAAGGAGGTGTCACTGATAGTGAAGATAAAAGGCAGAAAGCAGTATGCATGGAAAGATATCGCAAAAGAGATGATGAAGAAGGTCGAAAGTGGTCAGATATAGACATTGAAAGAGAAGAGGAATGCGGTATATGCATGGAGACAAATAGTAAAATTGTACTGCCTAACTGCAACCATGTTTTGTGCCTGAAATGTTACCGTGATTGGCGTACAAGATCTCAATCGTGCCCTTTCTGTCGTGACAATCTTAAAAGAGTGAACTCGGGCGATCTCTGGGTATACACCGACAGCAGGGACATAGTCGACATGGAAACAGTGATGAAGGAGAATCTCAGGAGGCTTTTCATGTATATAGATAAGTTGCCCCTTGTTACACCGGATAACCCTTTTGACTCGTATGATTCCCACTTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prok-RING_4 zf-C3HC4_3 zf-RING_2

Protein Analysis

248

Amino Acids

28.87

Weight (kDa)

6.45

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	148 - 194	5e-11	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	150 - 189	9.7e-09	Ring finger domain
Prok-RING_4	PF14447	151 - 194	3.9e-07	Prokaryotic RING finger family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	3 cut(s)	260, 606, 630
AciI	CCGC	3 cut(s)	147, 194, 453
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	3 cut(s)	137, 486, 538
AfiI	CCNNNNNNNGG	4 cut(s)	166, 270, 618, 738
AflII	CTTAAG	1 cut(s)	736
AgsI	TTSAA	5 cut(s)	15, 31, 53, 329, 437
AluBI	AGCT	2 cut(s)	11, 56
AluI	AGCT	2 cut(s)	11, 56
Alw26I	GTCTC	1 cut(s)	461
Ama87I	CYCGRG	2 cut(s)	203, 589
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	216
AvaI	CYCGRG	2 cut(s)	203, 589
BaeGI	GKGCMC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	110
BccI	CCATC	2 cut(s)	101, 236
BcoDI	GTCTC	1 cut(s)	461
BfrI	CTTAAG	1 cut(s)	736
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmeT110I	CYCGRG	2 cut(s)	203, 589
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	547
BsaJI	CCNNGG	3 cut(s)	95, 202, 264
BsaWI	WCCGGW	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 270, 618, 738
Bse3DI	GCAATG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	547
BseDI	CCNNGG	3 cut(s)	95, 202, 264
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	547
BseLI	CCNNNNNNNGG	4 cut(s)	166, 270, 618, 738
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	99, 673
BseSI	GKGCMC	1 cut(s)	557
BshFI	GGCC	1 cut(s)	83
BsiHKCI	CYCGRG	2 cut(s)	203, 589
BsiSI	CCGG	1 cut(s)	704
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	4 cut(s)	166, 270, 618, 738
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	2 cut(s)	203, 589
Bsp1286I	GDGCHC	2 cut(s)	202, 557
Bsp143I	GATC	2 cut(s)	542, 595
BspACI	CCGC	3 cut(s)	147, 194, 453
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	98, 672
BspLI	GGNNCC	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	736
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	95, 202, 264
BssMI	GATC	2 cut(s)	542, 595
BssNAI	GTATAC	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	607
Bst4CI	ACNGT	3 cut(s)	140, 527, 643
Bst6I	CTCTTC	2 cut(s)	161, 438
BstAFI	CTTAAG	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	69, 280
BstDEI	CTNAG	2 cut(s)	85, 659
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	545, 598
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	542, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	557
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BstZ17I	GTATAC	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	339, 648
Cac8I	GCNNGC	2 cut(s)	69, 280
Csp6I	GTAC	3 cut(s)	136, 485, 537
CviAII	CATG	7 cut(s)	68, 256, 376, 463, 503, 634, 673
CviJI	RGCY	8 cut(s)	11, 56, 83, 146, 200, 208, 246, 667
CviKI_1	RGCY	8 cut(s)	11, 56, 83, 146, 200, 208, 246, 667
CviQI	GTAC	3 cut(s)	136, 485, 537
DdeI	CTNAG	2 cut(s)	85, 659
DpnI	GATC	2 cut(s)	544, 597
DpnII	GATC	2 cut(s)	542, 595
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	161, 438
EarI	CTCTTC	2 cut(s)	161, 438
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	203, 589
EcoRV	GATATC	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	2 cut(s)	377, 464
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	7 cut(s)	71, 259, 379, 466, 506, 637, 676
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	7 cut(s)	67, 255, 375, 462, 502, 633, 672
FauI	CCCGC	1 cut(s)	187
FblI	GTMKAC	3 cut(s)	260, 606, 630
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	704
Hin1II	CATG	7 cut(s)	71, 259, 379, 466, 506, 637, 676
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	35, 655, 719, 728
HpaII	CCGG	1 cut(s)	704
Hpy166II	GTNNAC	4 cut(s)	261, 586, 607, 631
Hpy188I	TCNGA	6 cut(s)	42, 88, 96, 123, 287, 424
Hpy188III	TCNNGA	3 cut(s)	50, 566, 661
Hpy8I	GTNNAC	4 cut(s)	261, 586, 607, 631
HpyAV	CCTTC	2 cut(s)	401, 643
HpyCH4III	ACNGT	3 cut(s)	140, 527, 643
HpyCH4V	TGCA	7 cut(s)	71, 172, 186, 322, 375, 462, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	2 cut(s)	85, 659
Hsp92II	CATG	7 cut(s)	71, 259, 379, 466, 506, 637, 676
Kzo9I	GATC	2 cut(s)	542, 595
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	8 cut(s)	65, 152, 156, 527, 586, 604, 646, 717
LweI	GCATC	1 cut(s)	291
MaeIII	GTNAC	4 cut(s)	337, 521, 566, 697
MalI	GATC	2 cut(s)	544, 597
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	2 cut(s)	542, 595
MboII	GAAGA	5 cut(s)	110, 148, 362, 416, 455
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	202, 557
MluCI	AATT	3 cut(s)	216, 222, 480
MlyI	GAGTC	2 cut(s)	29, 713
MnlI	CCTC	7 cut(s)	90, 94, 212, 322, 326, 439, 657
Mph1103I	ATGCAT	2 cut(s)	377, 464
MseI	TTAA	4 cut(s)	212, 221, 576, 737
MspCI	CTTAAG	1 cut(s)	736
MspI	CCGG	1 cut(s)	704
Mva1269I	GAATGC	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	459
NdeII	GATC	2 cut(s)	542, 595
NlaIII	CATG	7 cut(s)	71, 259, 379, 466, 506, 637, 676
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	337, 566
NsiI	ATGCAT	2 cut(s)	377, 464
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	655, 728
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	29, 713
PpsI	GAGTC	2 cut(s)	29, 713
PspN4I	GGNNCC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	542
PsyI	GACNNNGTC	1 cut(s)	626
RsaI	GTAC	3 cut(s)	137, 486, 538
RsaNI	GTAC	3 cut(s)	136, 485, 537
SalI	GTCGAC	1 cut(s)	629
SaqAI	TTAA	4 cut(s)	212, 221, 576, 737
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	542, 595
SchI	GAGTC	2 cut(s)	29, 713
SduI	GDGCHC	2 cut(s)	202, 557
SetI	ASST	7 cut(s)	13, 58, 192, 234, 337, 412, 743
SfaNI	GCATC	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	216, 222, 480
SsiI	CCGC	3 cut(s)	147, 194, 453
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	140, 527, 643
TaqI	TCGA	3 cut(s)	248, 412, 630
TasI	AATT	3 cut(s)	216, 222, 480
TatI	WGTACW	1 cut(s)	484
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	655, 728
Tru1I	TTAA	4 cut(s)	212, 221, 576, 737
Tru9I	TTAA	4 cut(s)	212, 221, 576, 737
TscAI	CASTG	2 cut(s)	346, 648
TseFI	GTSAC	2 cut(s)	337, 566
Tsp45I	GTSAC	2 cut(s)	337, 566
TspDTI	ATGAA	3 cut(s)	417, 661, 662
TspRI	CASTG	2 cut(s)	346, 648
Tth111I	GACNNNGTC	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	736
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	3 cut(s)	260, 606, 630
Zsp2I	ATGCAT	2 cut(s)	377, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.