Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Reverse (-)

26591507 .. 26594300

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24860.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTACATAGCCTCAATGCGAAAGTCGTTCAAGGACTCTCTGAAAGTTCTTGAAGCTGATATTCAGCATGCAAATACTCTGGCCTCAGATTTTCCGAGGGAGTATGATGGTGCCTGTGTTCAGATGAGAATGTCATACAGTCCAGCCGCTCATCTCTTCCTTTTTCTGGTGCAATGGACTGACTGCAACCTCGCAGGAGCCCTTGGGCTGTTAAGAATTCTAATTTACAAGGTTTATGTGGATGGCTCGACCACCATGTCTACCAAGGAAAGGAAAGCAAGCATCAGAGAGTTCTATGCTGTTATTTATCCATCTTTATTGCAACTTCAAGGAGGTGTCACCGATAGTGAAGATAAAAGGCAGAAGGCAATGTGCCTGGAAAGGTATCGCAAAAGAGATGATGAGGAAAGTCGACAGTGTTCAGATATAGACATTGAAAGAGAAGAGGAATGCGGTATATGCATGGAGACAAATAGTAAAATTGTATTGCCCAACTGCAACCATGTTTTGTGCCTGAAATGTTACCGTGATTGGCGTACAAGATCTCAGTCGTGCCCTTTCTGTCGTGACAATCTTAAAAGAGTGAACTCAGGCGATCTCTGGGTCTACACCGACAGCAGGGACATAATTGACATGGAAACAGTGATGAGGGAGAATCTCAGGAGGCTTTTCACGTATATAGATAAGTTGCCCCTTATTACACCGGATAACCCTTTTGACTCGTATGATTCCCACCTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prok-RING_4 zf-C3HC4_3 zf-RING_2

Protein Analysis

248

Amino Acids

28.84

Weight (kDa)

6.13

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	3 cut(s)	260, 412, 606
AciI	CCGC	2 cut(s)	147, 453
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	2 cut(s)	5, 538
AfiI	CCNNNNNNNGG	4 cut(s)	166, 270, 618, 738
AgsI	TTSAA	4 cut(s)	31, 53, 329, 437
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	461
AoxI	GGCC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	331
AxyI	CCTNAGG	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	202
BccI	CCATC	3 cut(s)	101, 236, 319
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	112, 199
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	675
BsaJI	CCNNGG	3 cut(s)	95, 202, 264
BsaWI	WCCGGW	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 270, 618, 738
Bse21I	CCTNAGG	1 cut(s)	737
Bse3DI	GCAATG	2 cut(s)	179, 375
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	3 cut(s)	95, 202, 264
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	4 cut(s)	166, 270, 618, 738
BseMI	GCAATG	2 cut(s)	179, 375
BseMII	CTCAG	4 cut(s)	99, 560, 603, 673
BseSI	GKGCMC	1 cut(s)	557
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	704
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	4 cut(s)	166, 270, 618, 738
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	202, 557
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	542, 595
BspACI	CCGC	2 cut(s)	147, 453
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	4 cut(s)	98, 559, 602, 672
BspLI	GGNNCC	2 cut(s)	112, 199
BspT107I	GGYRCC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	179, 375
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	3 cut(s)	95, 202, 264
BssMI	GATC	2 cut(s)	542, 595
BssT1I	CCWWGG	2 cut(s)	202, 264
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	4 cut(s)	140, 417, 527, 643
Bst6I	CTCTTC	2 cut(s)	161, 438
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	675
BstC8I	GCNNGC	2 cut(s)	69, 280
BstDEI	CTNAG	5 cut(s)	85, 546, 589, 659, 737
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	545, 598
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	542, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	557
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
Bsu36I	CCTNAGG	1 cut(s)	737
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	422, 648
Cac8I	GCNNGC	2 cut(s)	69, 280
Csp6I	GTAC	2 cut(s)	4, 537
CviAII	CATG	5 cut(s)	68, 256, 463, 503, 634
CviJI	RGCY	8 cut(s)	11, 56, 83, 146, 200, 208, 246, 667
CviKI_1	RGCY	8 cut(s)	11, 56, 83, 146, 200, 208, 246, 667
CviQI	GTAC	2 cut(s)	4, 537
DdeI	CTNAG	5 cut(s)	85, 546, 589, 659, 737
DpnI	GATC	2 cut(s)	544, 597
DpnII	GATC	2 cut(s)	542, 595
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	161, 438
EarI	CTCTTC	2 cut(s)	161, 438
Eco130I	CCWWGG	2 cut(s)	202, 264
Eco24I	GRGCYC	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	2 cut(s)	202, 264
EcoT22I	ATGCAT	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	2 cut(s)	202, 264
FaeI	CATG	5 cut(s)	71, 259, 466, 506, 637
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	5 cut(s)	67, 255, 462, 502, 633
FblI	GTMKAC	3 cut(s)	260, 412, 606
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	704
Hin1II	CATG	5 cut(s)	71, 259, 466, 506, 637
HincII	GTYRAC	1 cut(s)	413
HindII	GTYRAC	1 cut(s)	413
HinfI	GANTC	4 cut(s)	35, 655, 719, 728
HpaII	CCGG	1 cut(s)	704
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	4 cut(s)	261, 413, 586, 607
Hpy188I	TCNGA	6 cut(s)	42, 88, 96, 123, 287, 424
Hpy188III	TCNNGA	3 cut(s)	50, 566, 661
Hpy8I	GTNNAC	4 cut(s)	261, 413, 586, 607
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	4 cut(s)	140, 417, 527, 643
HpyCH4IV	ACGT	1 cut(s)	674
HpyCH4V	TGCA	6 cut(s)	71, 172, 186, 322, 462, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	5 cut(s)	85, 546, 589, 659, 737
HpySE526I	ACGT	1 cut(s)	674
Hsp92II	CATG	5 cut(s)	71, 259, 466, 506, 637
Kzo9I	GATC	2 cut(s)	542, 595
LmnI	GCTCC	1 cut(s)	197
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	1 cut(s)	674
MaeIII	GTNAC	3 cut(s)	337, 521, 566
MalI	GATC	2 cut(s)	544, 597
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	2 cut(s)	542, 595
MboII	GAAGA	3 cut(s)	148, 362, 455
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	202, 557
MluCI	AATT	4 cut(s)	216, 222, 480, 627
MlyI	GAGTC	2 cut(s)	29, 713
MnlI	CCTC	9 cut(s)	22, 90, 94, 200, 326, 397, 439, 642, 657
Mph1103I	ATGCAT	1 cut(s)	464
MseI	TTAA	2 cut(s)	212, 576
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	459
NdeII	GATC	2 cut(s)	542, 595
NlaIII	CATG	5 cut(s)	71, 259, 466, 506, 637
NlaIV	GGNNCC	2 cut(s)	112, 199
NmuCI	GTSAC	2 cut(s)	337, 566
NsiI	ATGCAT	1 cut(s)	464
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	655, 728
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	2 cut(s)	29, 713
PpsI	GAGTC	2 cut(s)	29, 713
Ppu21I	YACGTR	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	112, 199
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	2 cut(s)	5, 538
RsaNI	GTAC	2 cut(s)	4, 537
SalI	GTCGAC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	212, 576
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	542, 595
SchI	GAGTC	2 cut(s)	29, 713
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	202, 557
SetI	ASST	8 cut(s)	58, 192, 234, 337, 386, 677, 738, 743
SfaNI	GCATC	1 cut(s)	291
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	4 cut(s)	216, 222, 480, 627
SsiI	CCGC	2 cut(s)	147, 453
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	2 cut(s)	202, 264
TaaI	ACNGT	4 cut(s)	140, 417, 527, 643
TaiI	ACGT	1 cut(s)	677
TaqI	TCGA	2 cut(s)	248, 412
TasI	AATT	4 cut(s)	216, 222, 480, 627
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	655, 728
Tru1I	TTAA	2 cut(s)	212, 576
Tru9I	TTAA	2 cut(s)	212, 576
TscAI	CASTG	2 cut(s)	422, 648
TseFI	GTSAC	2 cut(s)	337, 566
Tsp45I	GTSAC	2 cut(s)	337, 566
TspRI	CASTG	2 cut(s)	422, 648
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	3 cut(s)	260, 412, 606
Zsp2I	ATGCAT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.