Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Forward (+)

6919869 .. 6922553

Gene Structure 2685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCGAAAGTCATTCAAGGATTCGCTTAAGGCGCTTGAAGCTGATATTCAGTTTGCCAATACTTTGGCTTCAGATTATCCAAGAGAATATGATGGGGGTTGCCTCCAAATGAGATTATCATACAGCCCCGCCGCCCAATTCTTTCTGTTTCTGATTCAATGGACTGATTGCCACCTTGCTGGTGCCTTAGGATTGCTTAGGATTCTTATATACAGGGCATATGAGGATGGGAAGACCACCATGTCAATTCAAGAAAGAAAAGCTAGTTTAAAAGAGTTCTACAGTGTAATATTTCCCTCATTATTGCAACTTCAAAGGAAACTGACTGATGTAGAAGAGAGGAAACAGAGAGAAATCTGTTCCAAGTACAAGAGGAAAGATGAGACGGACAAAGGAAAGCTCTCTGAAATTGAGTTGGAGCGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAGCAAGGTCGTATTGCCCAATTGCAGTCACTCTTTGTGCATGAAGTGCTACCGGAACTGGCGCACACGCTCGCAGTCCTGCCCCTTCTGCCGGGACAGCCTCAAAAGAGTCGACTCGTGTGAACTCTGGATCTACACCAGCAACAATGAGATTGCTGATCTGTCTGCAATCTCAAGGGAGAATTTGAAGAGACTGTTTATCTACATTGATAAGCTGCCTCTCCTGGTTCCAAATCGTGGGATTGTTTCTTATGACGTTTATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

241

Amino Acids

28.1

Weight (kDa)

8.57

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	142 - 188	2.7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	144 - 183	2.5e-08	Ring finger domain
zf-C3HC4_2	PF13923	144 - 182	4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	144 - 183	6.5e-06	zinc-RING finger domain
zf-C3HC4	PF00097	145 - 182	3.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	129, 132
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	637
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	546, 692
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	6 cut(s)	16, 38, 158, 251, 314, 643
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	41, 263, 400, 670
AluI	AGCT	4 cut(s)	41, 263, 400, 670
Alw26I	GTCTC	2 cut(s)	377, 640
AlwI	GGATC	1 cut(s)	593
ApeKI	GCWGC	1 cut(s)	670
ApoI	RAATTY	1 cut(s)	637
AspLEI	GCGC	2 cut(s)	34, 519
AsuC2I	CCSGG	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	657
BccI	CCATC	2 cut(s)	86, 221
BciT130I	CCWGG	1 cut(s)	680
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	377, 640
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	132, 671
BlsI	GCNGC	2 cut(s)	133, 672
Bme1390I	CCNGG	2 cut(s)	548, 680
BmiI	GGNNCC	2 cut(s)	184, 684
BmrFI	CCNGG	2 cut(s)	548, 680
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	613
BpuMI	CCSGG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	718
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 692
Bse1I	ACTGG	1 cut(s)	518
Bse21I	CCTNAGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	680
BseCI	ATCGAT	1 cut(s)	718
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	546, 692
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	657
BshNI	GGYRCC	1 cut(s)	182
BshVI	ATCGAT	1 cut(s)	718
BsiSI	CCGG	2 cut(s)	508, 547
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	546, 692
BsmAI	GTCTC	2 cut(s)	377, 640
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	585, 613
BspACI	CCGC	2 cut(s)	129, 132
BspDI	ATCGAT	1 cut(s)	718
BspLI	GGNNCC	2 cut(s)	184, 684
BspPI	GGATC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	518
BssMI	GATC	2 cut(s)	585, 613
BssSI	CACGAG	1 cut(s)	571
Bst2BI	CACGAG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	284, 651
Bst6I	CTCTTC	2 cut(s)	330, 638
BstAFI	CTTAAG	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	2 cut(s)	187, 197
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 519
BstKTI	GATC	2 cut(s)	588, 616
BstMAI	GTCTC	2 cut(s)	377, 640
BstMBI	GATC	2 cut(s)	585, 613
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 38, 501, 543, 552
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	546, 678
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	657
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	585
BstXI	CCANNNNNNTGG	2 cut(s)	64, 179
BstYI	RGATCY	1 cut(s)	585
Bsu15I	ATCGAT	1 cut(s)	718
Bsu36I	CCTNAGG	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	718
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	527
CfoI	GCGC	2 cut(s)	34, 519
ClaI	ATCGAT	1 cut(s)	718
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	3 cut(s)	241, 445, 496
CviJI	RGCY	7 cut(s)	41, 68, 126, 263, 400, 555, 670
CviKI_1	RGCY	7 cut(s)	41, 68, 126, 263, 400, 555, 670
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	187, 197
DpnI	GATC	2 cut(s)	587, 615
DpnII	GATC	2 cut(s)	585, 613
DraI	TTTAAA	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	330, 638
EarI	CTCTTC	2 cut(s)	330, 638
Eco57I	CTGAAG	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	678
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	3 cut(s)	244, 448, 499
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	3 cut(s)	240, 444, 495
FauI	CCCGC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	132, 671
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	132, 671
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	2 cut(s)	33, 518
GluI	GCNGC	2 cut(s)	132, 671
HaeII	RGCGCY	1 cut(s)	35
HapII	CCGG	2 cut(s)	508, 547
HhaI	GCGC	2 cut(s)	34, 519
Hin1II	CATG	3 cut(s)	244, 448, 499
Hin6I	GCGC	2 cut(s)	32, 517
HinP1I	GCGC	2 cut(s)	32, 517
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HinfI	GANTC	5 cut(s)	20, 154, 202, 564, 569
HpaII	CCGG	2 cut(s)	508, 547
Hpy166II	GTNNAC	2 cut(s)	568, 578
Hpy188I	TCNGA	3 cut(s)	73, 153, 406
Hpy188III	TCNNGA	2 cut(s)	251, 583
Hpy8I	GTNNAC	2 cut(s)	568, 578
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	2 cut(s)	284, 651
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	5 cut(s)	307, 444, 480, 495, 623
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 38, 501, 543, 552
HpyF3I	CTNAG	2 cut(s)	187, 197
HpySE526I	ACGT	1 cut(s)	711
Hsp92II	CATG	3 cut(s)	244, 448, 499
HspAI	GCGC	2 cut(s)	32, 517
Kzo9I	GATC	2 cut(s)	585, 613
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	1 cut(s)	657
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	2 cut(s)	587, 615
MboI	GATC	2 cut(s)	585, 613
MboII	GAAGA	5 cut(s)	244, 347, 437, 440, 655
MfeI	CAATTG	1 cut(s)	475
MflI	RGATCY	1 cut(s)	585
MluCI	AATT	5 cut(s)	137, 246, 408, 475, 637
MlyI	GAGTC	2 cut(s)	563, 573
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	113, 217, 307, 333, 366, 566, 684
MseI	TTAA	2 cut(s)	27, 269
MslI	CAYNNNNRTG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	2 cut(s)	508, 547
MspR9I	CCNGG	2 cut(s)	548, 680
MunI	CAATTG	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	5 cut(s)	31, 38, 501, 543, 552
NciI	CCSGG	1 cut(s)	548
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	2 cut(s)	585, 613
NlaIII	CATG	3 cut(s)	244, 448, 499
NlaIV	GGNNCC	2 cut(s)	184, 684
NmuCI	GTSAC	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	20, 154, 202
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	2 cut(s)	133, 672
PleI	GAGTC	2 cut(s)	563, 572
PpsI	GAGTC	2 cut(s)	563, 572
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	184, 684
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	449
SalI	GTCGAC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	27, 269
SatI	GCNGC	2 cut(s)	132, 671
Sau3AI	GATC	2 cut(s)	585, 613
SchI	GAGTC	2 cut(s)	563, 573
ScrFI	CCNGG	2 cut(s)	548, 680
SetI	ASST	7 cut(s)	43, 177, 265, 402, 465, 672, 714
SfcI	CTRYAG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	26, 628
SmoI	CTYRAG	2 cut(s)	26, 628
Sse9I	AATT	5 cut(s)	137, 246, 408, 475, 637
SsiI	CCGC	2 cut(s)	129, 132
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	546, 678
TaaI	ACNGT	2 cut(s)	284, 651
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	2 cut(s)	567, 718
TasI	AATT	5 cut(s)	137, 246, 408, 475, 637
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	20, 154, 202
Tru1I	TTAA	2 cut(s)	27, 269
Tru9I	TTAA	2 cut(s)	27, 269
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	1 cut(s)	670
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	467, 512
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.