Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Reverse (-)

26008842 .. 26011768

Gene Structure 2927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCGAAAGTCTTTCAAGGATTCTCTTAAGGCACTTGAAGCTGATATTCAGTTTGCCAATACTCTGGCTTCTAATTATCGAGGGGAATATGATGGTGGCTGCCTCCAAATGAGGTTATCCTACAGTCCAGCTGCTCAATTCTTTCTGTTTCTTATTCAGTGGACCGATTGTCACCTTGCTGGAGCCCTGGGATTGCTTAGAATTCTTATATACAAGGCGTACGAGGATGGGAAGACCACTATGTCTATTCATGAAAGAAAGGCTAGTCTAAAGGAGTTCTACACAGGTGTGATATTTCCTTCATTGTTGCAACTTCAAAGAGGATTGACTGATGTAGAAGATAGAAAACAGAAAGAAATTTTTTCCACCAAGTACAAGAGAAAAGATGAGATGGACAAAGGAAAGCTCTCTGAAATTGATTCCGAGCGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAGCAAGGTCGTATTGCCCAATTGCAGTCATTCTATGTGTATGAAGTGCTACCGGGACTGGCGTACGCGGTCGCAGTCGTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTCAACTCATGTGACCTTTGGATCTACACCAGCAACAATGAGATTGTTGACCTGTCTGCAATCTCTAGGCAGAACTTGAAGAGACTTTTTATGTACATTGATAAGCTGCCTCTCATTGTTCCAAATCCTGCATTTGTTTCCTATGAGCCTCATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

243

Amino Acids

28.16

Weight (kDa)

8.6

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AccII	CGCG	1 cut(s)	529
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	2 cut(s)	201, 357
AfaI	GTAC	4 cut(s)	221, 374, 526, 665
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	16, 38, 317, 649
AhdI	GACNNNNNGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	186
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	4 cut(s)	41, 131, 406, 676
AluI	AGCT	4 cut(s)	41, 131, 406, 676
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	1 cut(s)	599
ApeKI	GCWGC	3 cut(s)	99, 131, 676
ApoI	RAATTY	2 cut(s)	201, 357
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	86, 118, 663
BccI	CCATC	3 cut(s)	86, 221, 385
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	2 cut(s)	264, 636
BfmI	CTRYAG	1 cut(s)	121
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	3 cut(s)	100, 132, 677
BlsI	GCNGC	3 cut(s)	101, 133, 678
Bme1390I	CCNGG	2 cut(s)	188, 515
Bme18I	GGWCC	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	188, 515
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	515
Bsa29I	ATCGAT	1 cut(s)	724
BsaJI	CCNNGG	2 cut(s)	186, 187
Bse1I	ACTGG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	186, 187
BseGI	GGATG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	3 cut(s)	86, 118, 663
Bsh1236I	CGCG	1 cut(s)	529
Bsh1285I	CGRYCG	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	724
BsiEI	CGRYCG	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	514
BsiWI	CGTACG	2 cut(s)	219, 524
BslFI	GGGAC	1 cut(s)	530
BsmAI	GTCTC	1 cut(s)	646
BsmFI	GGGAC	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	187, 545
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	1 cut(s)	591
BspACI	CCGC	1 cut(s)	529
BspDI	ATCGAT	1 cut(s)	724
BspFNI	CGCG	1 cut(s)	529
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	599
BspTI	CTTAAG	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	2 cut(s)	186, 187
BssMI	GATC	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	644
BstAFI	CTTAAG	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	663
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	529
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	1 cut(s)	591
BstMCI	CGRYCG	1 cut(s)	533
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 549, 558
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	186, 513
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	545
BstUI	CGCG	1 cut(s)	529
BstV1I	GCAGC	3 cut(s)	86, 118, 663
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	591
Bsu15I	ATCGAT	1 cut(s)	724
BsuTUI	ATCGAT	1 cut(s)	724
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	164
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	724
Csp6I	GTAC	4 cut(s)	220, 373, 525, 664
CviAII	CATG	3 cut(s)	251, 451, 579
CviQI	GTAC	4 cut(s)	220, 373, 525, 664
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
DrdI	GACNNNNNNGTC	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	644
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	3 cut(s)	254, 454, 582
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	3 cut(s)	250, 450, 578
Fnu4HI	GCNGC	3 cut(s)	100, 132, 677
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	100, 132, 677
FspBI	CTAG	2 cut(s)	264, 636
GluI	GCNGC	3 cut(s)	100, 132, 677
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	1 cut(s)	514
Hin1II	CATG	3 cut(s)	254, 454, 582
HincII	GTYRAC	2 cut(s)	574, 619
HindII	GTYRAC	2 cut(s)	574, 619
HinfI	GANTC	3 cut(s)	20, 419, 570
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	162, 574, 619
Hpy188I	TCNGA	2 cut(s)	412, 424
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	3 cut(s)	162, 574, 619
HpyAV	CCTTC	2 cut(s)	309, 556
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	5 cut(s)	310, 450, 486, 629, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 549, 558
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	254, 454, 582
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	3 cut(s)	86, 118, 663
MaeI	CTAG	2 cut(s)	264, 636
MaeIII	GTNAC	3 cut(s)	170, 554, 581
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	5 cut(s)	244, 350, 443, 446, 661
MfeI	CAATTG	1 cut(s)	481
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	2 cut(s)	187, 545
MluCI	AATT	6 cut(s)	73, 137, 201, 357, 414, 481
MlyI	GAGTC	1 cut(s)	579
MnlI	CCTC	8 cut(s)	74, 105, 113, 217, 314, 572, 690, 729
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	2 cut(s)	287, 455
MspA1I	CMGCKG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	188, 515
MunI	CAATTG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	529
MwoI	GCNNNNNNNGC	3 cut(s)	38, 549, 558
NciI	CCSGG	1 cut(s)	515
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	254, 454, 582
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	3 cut(s)	170, 554, 581
OliI	CACNNNNGTG	1 cut(s)	287
PagI	TCATGA	1 cut(s)	250
PasI	CCCWGGG	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	20, 419
Pfl23II	CGTACG	2 cut(s)	219, 524
PkrI	GCNGC	3 cut(s)	101, 133, 678
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspLI	CGTACG	2 cut(s)	219, 524
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	591
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	4 cut(s)	221, 374, 526, 665
RsaNI	GTAC	4 cut(s)	220, 373, 525, 664
RseI	CAYNNNNRTG	2 cut(s)	287, 455
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	3 cut(s)	100, 132, 677
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	2 cut(s)	188, 515
SduI	GDGCHC	2 cut(s)	187, 545
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	287, 455
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	6 cut(s)	73, 137, 201, 357, 414, 481
SsiI	CCGC	1 cut(s)	529
SspMI	CTAG	2 cut(s)	264, 636
StyD4I	CCNGG	2 cut(s)	186, 513
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	79, 724
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	6 cut(s)	73, 137, 201, 357, 414, 481
TatI	WGTACW	2 cut(s)	372, 663
TfiI	GAWTC	2 cut(s)	20, 419
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	3 cut(s)	170, 554, 581
TseI	GCWGC	3 cut(s)	99, 131, 676
Tsp45I	GTSAC	3 cut(s)	170, 554, 581
TspDTI	ATGAA	5 cut(s)	239, 267, 291, 473, 518
TspRI	CASTG	1 cut(s)	164
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	2 cut(s)	201, 357
XspI	CTAG	2 cut(s)	264, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.