Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Reverse (-)

29722677 .. 29725193

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29250.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTACATAGCTTCAATGCGAAAGTCGTTCAAGGACTCTCTGAAAGTTCTTGAAGCTGATATTCAGCATGCAAATACTCTGGCCTCAGATTTTCCGAGGGAGTATGATGGTGCTTGTCTTCAGATGAGAATGTCGTACAGTCCAGCCGCTCATCTCTTCCTTTTTCTGGTGCAGTGGACTGGCTGCAACCTTGCAGGAGCCCTCGGGCTGTTAAGAATTCTAATCTACAAGGTTTATGTGGATGGCTCGACCACCATGTCTACGAAGGAAAGGAAAGCAAGCATCAGAGAGTTCTATGCTGTTATTTATCCCTCTTTATTGCAACTTCAAGGAGGTGTCACCGATAGTGAAGATAAAAGGCAGAAGGCAGTATGCATGGAAAGGTATTGCAAAAGAGATGATGAGGAAAGTAGACAGTGTTCAGATATAGACATTGAAAGAGAAGAGGAATGCGGTATATGCATGGAGACAAATAGTAAAATTGTATTGCCGAACTGCAACCATGTTTTGTGCCTAAAATGTTACCGTGATTGGCATACAAGATCGAAGTCGTGCCCTTTCTGTCGTGACAATCTTAAAAGAGTGAACTCGGGCGATCTTTGGGTATACATGGACAGCAGGGACATAGTCGACATGGAAACAGTGATGAGGGAGAATCTCAGGAGGCTTTTCATGTATATAGATAAGTTGCCCCTTATTACACCGGATAACCCTTTTGACTCATATGATTCCCACTTAAGGTCGATCGATGGGGTCCAAAACCAGTCTCCCGTTGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prok-RING_4 zf-C3HC4_3 zf-RING_2

Protein Analysis

261

Amino Acids

30.07

Weight (kDa)

6.0

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	4 cut(s)	260, 412, 606, 630
AciI	CCGC	2 cut(s)	147, 453
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	5, 137
AfiI	CCNNNNNNNGG	2 cut(s)	166, 738
AflII	CTTAAG	1 cut(s)	736
AgsI	TTSAA	5 cut(s)	15, 31, 53, 329, 437
AluBI	AGCT	2 cut(s)	11, 56
AluI	AGCT	2 cut(s)	11, 56
Alw26I	GTCTC	2 cut(s)	461, 771
Ama87I	CYCGRG	2 cut(s)	203, 589
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	754
AsuHPI	GGTGA	1 cut(s)	331
AvaI	CYCGRG	2 cut(s)	203, 589
AvaII	GGWCC	1 cut(s)	754
BaeGI	GKGCMC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	3 cut(s)	101, 236, 743
BcoDI	GTCTC	2 cut(s)	461, 771
BfrI	CTTAAG	1 cut(s)	736
BisI	GCNGC	2 cut(s)	147, 184
BlsI	GCNGC	2 cut(s)	148, 185
Bme18I	GGWCC	1 cut(s)	754
BmeT110I	CYCGRG	2 cut(s)	203, 589
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	2 cut(s)	199, 755
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	95, 202
BsaWI	WCCGGW	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 738
Bse1I	ACTGG	2 cut(s)	184, 763
BseCI	ATCGAT	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	95, 202
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	166, 738
BseMII	CTCAG	2 cut(s)	99, 673
BseNI	ACTGG	2 cut(s)	184, 763
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	747
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	747
BsiEI	CGRYCG	1 cut(s)	747
BsiHKCI	CYCGRG	2 cut(s)	203, 589
BsiSI	CCGG	1 cut(s)	704
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	2 cut(s)	166, 738
BsmAI	GTCTC	2 cut(s)	461, 771
BsmFI	GGGAC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	2 cut(s)	203, 589
Bsp1286I	GDGCHC	2 cut(s)	202, 557
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	542, 595, 744
BspACI	CCGC	2 cut(s)	147, 453
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	98, 672
BspDI	ATCGAT	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	199, 755
BspTI	CTTAAG	1 cut(s)	736
BsrBI	CCGCTC	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	184, 763
BssECI	CCNNGG	2 cut(s)	95, 202
BssMI	GATC	3 cut(s)	542, 595, 744
BssNAI	GTATAC	1 cut(s)	607
Bst1107I	GTATAC	1 cut(s)	607
Bst4CI	ACNGT	4 cut(s)	140, 417, 527, 643
Bst6I	CTCTTC	2 cut(s)	161, 438
BstAFI	CTTAAG	1 cut(s)	736
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	69, 280
BstDEI	CTNAG	2 cut(s)	85, 659
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	545, 598, 747
BstMAI	GTCTC	2 cut(s)	461, 771
BstMBI	GATC	3 cut(s)	542, 595, 744
BstMCI	CGRYCG	1 cut(s)	747
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	110
BstZ17I	GTATAC	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	747
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	3 cut(s)	179, 422, 648
Cac8I	GCNNGC	2 cut(s)	69, 280
Cfr13I	GGNCC	1 cut(s)	754
ClaI	ATCGAT	1 cut(s)	747
Csp6I	GTAC	2 cut(s)	4, 136
CviAII	CATG	8 cut(s)	68, 256, 376, 463, 503, 610, 634, 673
CviJI	RGCY	9 cut(s)	11, 56, 83, 146, 183, 200, 208, 246, 667
CviKI_1	RGCY	9 cut(s)	11, 56, 83, 146, 183, 200, 208, 246, 667
CviQI	GTAC	2 cut(s)	4, 136
DdeI	CTNAG	2 cut(s)	85, 659
DpnI	GATC	3 cut(s)	544, 597, 746
DpnII	GATC	3 cut(s)	542, 595, 744
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	161, 438
EarI	CTCTTC	2 cut(s)	161, 438
Eco24I	GRGCYC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	203, 589
EcoRI	GAATTC	1 cut(s)	216
EcoT22I	ATGCAT	2 cut(s)	377, 464
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	8 cut(s)	71, 259, 379, 466, 506, 613, 637, 676
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	8 cut(s)	67, 255, 375, 462, 502, 609, 633, 672
FauNDI	CATATG	1 cut(s)	724
FblI	GTMKAC	4 cut(s)	260, 412, 606, 630
Fnu4HI	GCNGC	2 cut(s)	147, 184
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	147, 184
GluI	GCNGC	2 cut(s)	147, 184
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	704
Hin1II	CATG	8 cut(s)	71, 259, 379, 466, 506, 613, 637, 676
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	35, 655, 719, 728
HpaII	CCGG	1 cut(s)	704
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	6 cut(s)	177, 261, 413, 586, 607, 631
Hpy188I	TCNGA	6 cut(s)	42, 88, 96, 123, 287, 424
Hpy188III	TCNNGA	3 cut(s)	50, 566, 661
Hpy8I	GTNNAC	6 cut(s)	177, 261, 413, 586, 607, 631
HpyAV	CCTTC	2 cut(s)	259, 358
HpyCH4III	ACNGT	4 cut(s)	140, 417, 527, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	2 cut(s)	85, 659
Hsp92II	CATG	8 cut(s)	71, 259, 379, 466, 506, 613, 637, 676
Kzo9I	GATC	3 cut(s)	542, 595, 744
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	9 cut(s)	65, 152, 156, 165, 180, 604, 646, 717, 776
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	337, 521, 566
MalI	GATC	3 cut(s)	544, 597, 746
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	3 cut(s)	542, 595, 744
MboII	GAAGA	4 cut(s)	110, 148, 362, 455
MhlI	GDGCHC	2 cut(s)	202, 557
MluCI	AATT	3 cut(s)	216, 480, 777
MlyI	GAGTC	2 cut(s)	29, 713
MnlI	CCTC	9 cut(s)	90, 94, 212, 322, 326, 397, 439, 642, 657
Mph1103I	ATGCAT	2 cut(s)	377, 464
MseI	TTAA	4 cut(s)	212, 576, 737, 781
MspCI	CTTAAG	1 cut(s)	736
MspI	CCGG	1 cut(s)	704
Mva1269I	GAATGC	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	459
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	3 cut(s)	542, 595, 744
NlaIII	CATG	8 cut(s)	71, 259, 379, 466, 506, 613, 637, 676
NlaIV	GGNNCC	2 cut(s)	199, 755
NmuCI	GTSAC	2 cut(s)	337, 566
NsiI	ATGCAT	2 cut(s)	377, 464
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	655, 728
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	148, 185
Ple19I	CGATCG	1 cut(s)	747
PleI	GAGTC	2 cut(s)	29, 713
PpsI	GAGTC	2 cut(s)	29, 713
PspN4I	GGNNCC	2 cut(s)	199, 755
PspPI	GGNCC	1 cut(s)	754
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PsyI	GACNNNGTC	1 cut(s)	626
PvuI	CGATCG	1 cut(s)	747
RsaI	GTAC	2 cut(s)	5, 137
RsaNI	GTAC	2 cut(s)	4, 136
SalI	GTCGAC	1 cut(s)	629
SaqAI	TTAA	4 cut(s)	212, 576, 737, 781
SatI	GCNGC	2 cut(s)	147, 184
Sau3AI	GATC	3 cut(s)	542, 595, 744
Sau96I	GGNCC	1 cut(s)	754
SchI	GAGTC	2 cut(s)	29, 713
SduI	GDGCHC	2 cut(s)	202, 557
SetI	ASST	7 cut(s)	13, 58, 192, 234, 337, 386, 743
SfaNI	GCATC	1 cut(s)	291
SinI	GGWCC	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	216, 480, 777
SsiI	CCGC	2 cut(s)	147, 453
TaaI	ACNGT	4 cut(s)	140, 417, 527, 643
TaqI	TCGA	5 cut(s)	248, 545, 630, 743, 747
TasI	AATT	3 cut(s)	216, 480, 777
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	655, 728
Tru1I	TTAA	4 cut(s)	212, 576, 737, 781
Tru9I	TTAA	4 cut(s)	212, 576, 737, 781
TscAI	CASTG	3 cut(s)	179, 422, 648
TseFI	GTSAC	2 cut(s)	337, 566
TseI	GCWGC	1 cut(s)	183
Tsp45I	GTSAC	2 cut(s)	337, 566
TspDTI	ATGAA	1 cut(s)	661
TspRI	CASTG	3 cut(s)	179, 422, 648
Tth111I	GACNNNGTC	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	754
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	4 cut(s)	260, 412, 606, 630
Zsp2I	ATGCAT	2 cut(s)	377, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.